LOC110501938 (LOC106582481)


Basic Information

Item Value
gene id LOC110501938
gene name LOC106582481
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45869308 ~ 45871541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579817.2
GAAACAATTGCCTAGCGGGTTTGACTATGAGAAGTAGTAAATCAGGGTAGGTACAGTATATGTTGATATGGGGTGTTTCCCACACCTTGGGTGTTAAGTCCAGAGAGCAGAAGTCTGATTGGGTGTGAAGGGGAGGGGTCCGAGCAGCAGCAGAGTTAGGGGaggatgagatgtgatgtgagggGAGCGTTTAGCTCAGTTCAGCTCTGTCTGCCTTGTCGTTCTCTTCAGACAGCCGGGGGGGGGGAAGTGAGATGAAGGAGCACTGAAACTCCAGACactcacagaggagagacagagacagagacagctttCAACACGTAGAGAACTCTGGAAGACTTgtgacaccaacactgagaccGACGGGTCACTTACTGACTCATCATACTGTTGGCTGGGTCATTTTTTCCTTTCTATTCAGTGAGGCAAAGAAGATTCTTCCACAGCCAAGGAGTGACGTCAACACTGGACCAGAATGTCAGGACAGTGTGGGACTAACTGGTTAATGGAAGAGGAGTAAAGCTGAATTGCTTGATTGCAGAACTGAGCACTCACAGAAGACTGACTCTTCTTCGCTTGTGTGACGCGTAGGTTTCATCTCAGACAAGTCTCCAGTGTAGTTTTTCTGTCGTCTCAGACATAGCCATCTCCAGTGTGGATCAGGACCATGAATGTTTTACCTAACCCCATGACCAGGGCCCATCAGGAgcagcctctccctctctgctcccagGGGGCCCACCTCCAGGACTTCTCCTCCAGGTGTCCTCTAGGGCTTGGTGCTGGTCATGGGGGCAGGCTTAGGGCCATGGGGGGGCCTCTGGGGCCCCAGAGACCAGGCAAGCCACCGCGGGAGCTGAGCCCCGAAGAGCAGCAGGATCTAAGGAGGAAGATCAACAGccgggagaggaagaggatgcagGACCTGAACGTCGCCATGGACGCTCTGAGGGAGGTGATGGTGCCTtacgcctcctcctctccttcctcctcgtcctcctcccagGGGCCACACTCCCACCAGCAGCAGCCAGGGACCCCACCTGGACGCAGGCTCTCCAAAATCTCCACCTTGGTCCTGGCCCGTAACTACATCCTCCTCCTGGGCTCGTCTCTGCAAGAGATGCGCCGGCTCCTGGGGGAGGTGAGTGTTGGGGTGGGGGTTGGTGTGGGGGTGAACACGGGGCCTGTCCCCAGGCTGCTACTGGCCGGGGGTTGGCCCCTCCTCACCGGCCCCAGTCAGCTTCTCCTCTCCCCAGAATCTCTCCTGACctcagcctcctcctcctcctcctcctccaagtgTCCTCTGTTGCCTCCTGGCCACTTGGAGGGCCCCATGGCCCCAGTGCAGTGGGGCTCAGCTGGGGCTCCTGGAGGGCCACTCTGCCCCTGTGTGGTGTGCAGGCTGCCCAGATTCAGCCACCCCAGCCCTGGACCCAGGTTCCCCAAGTGAAGGCTTGCTGGGACCACCTCTCATGTGTTCTTCTGGTCTGCTACAATGACTGATTCTTCTGAGCGGATGGACTTCTGGTTATGGTTTATTATCTTATTTTTCTGGAGATCTTgacatgttattttttttaatattagtattatcttttttttttgttgactaATTCAATTATAACTTTGTTGTAATGGACTTTGTCCATTAGGCTTTTATGAATATCTTGTGGACAGATGAATCTGTCAAGGCTCATGTATAATTGTGTGATGCAAGCAGCAGTAGTTCCTAGTTTGGGGGTTTTGTTGTTAATTATTTGGACAAATGAGGATTAGGCGAAGGTGGTTTTTAAATGGGTGTAGTGATTTTCAAGCCCGTGTGCAGATGAAAAATAatttccacagccacaaagtcaattTTGGCTGTatcgtaaaaatgtatgaaaactaAAATGCGCTTTTTGGGCATGTTAAAAACACGGGTGAAAATCGCAGAAGGGAGGGGTTTGGCCGAGAGTTTCCatttgagagggaggagacatCACTTCCTTCCCTTGCACAAAGGTTATCACAATTGTTAACGGCATTTCCCGGAAGTAAAACTTACAAAACTTTCACAACATACTTTTACTTCCGGGTAACCGAGATTAGTTTTTGAAATTATTGGTGACTGTGGTCAGTAAAAGTcaatgtattttagattttatGAACAAATTCTATTTTATATGATAATAGATGAAGCTACGTGTAAGTTCTAACACAGACAATAAATAGAAATGTACTGTTTA

Function

NR:

description
oligodendrocyte transcription factor 1-like

GO: NA

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579817.2 True 2234 mRNA 0.50 1 45869308 45871541
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110501937 LOC106582489 coding upstream 28289 45838735 ~ 45841019 (+)
gatd3a LOC106582488 coding upstream 116218 45627869 ~ 45753090 (+)
LOC110501934 LOC106582485 coding upstream 187293 45669820 ~ 45682015 (+)
LOC110502172 fam160a2 coding upstream 213215 45606721 ~ 45656093 (+)
LOC110501945 NA coding upstream 262807 45587722 ~ 45606501 (+)
ercc1 ercc1 coding downstream 61264 45932805 ~ 45940900 (+)
LOC110501949 LOC106582502 coding downstream 82822 45954363 ~ 45971125 (+)
LOC100136162 gbp coding downstream 110063 45981604 ~ 46008178 (+)
LOC110501948 LOC106582500 coding downstream 157008 46028549 ~ 46088009 (+)
serpine3 LOC106582496 coding downstream 235753 46107294 ~ 46115457 (+)
G1815638 NA non-coding upstream 602 45868451 ~ 45868706 (+)
G1815637 NA non-coding upstream 4099 45864983 ~ 45865209 (+)
G1815628 NA non-coding upstream 21510 45847524 ~ 45847798 (+)
G1815625 NA non-coding upstream 22991 45846100 ~ 45846317 (+)
G1815600 NA non-coding upstream 32824 45836256 ~ 45836484 (+)
G1815653 NA non-coding downstream 31265 45902806 ~ 45926479 (+)
G1815667 NA non-coding downstream 56267 45927808 ~ 45928285 (+)
G1815657 NA non-coding downstream 70374 45941915 ~ 45943882 (+)
G1815643 NA non-coding downstream 74681 45946222 ~ 45948045 (+)
G1815137 NA other upstream 86772 45781499 ~ 45782536 (+)
G1815113 LOC106582487 other upstream 142980 45725039 ~ 45726328 (+)
LOC110502177 LOC106582482 other upstream 341868 45521920 ~ 45527893 (+)
LOC110501942 atp5g2 other upstream 693836 45172891 ~ 45175477 (+)
G1814811 NA other upstream 758079 45110547 ~ 45111229 (+)
LOC110501947 LOC106582498 other downstream 287118 46157212 ~ 46170323 (+)
G1815855 NA other downstream 305066 46176607 ~ 46177757 (+)
G1816074 NA other downstream 463299 46334840 ~ 46335370 (+)
G1816206 LOC106581610 other downstream 881350 46752891 ~ 46770563 (+)
G1816706 NA other downstream 1212719 47084260 ~ 47085389 (+)

Expression

LOC110501938(LOC106582481) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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LOC110501938(LOC106582481) Expression in each Bioproject

Bar chart with 9 bars.
LOC110501938(LOC106582481) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network