Gene
RNA
| Item | Value |
|---|---|
| gene id | ercc1 |
| gene name | ercc1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 45932805 ~ 45940900 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ercc1 | Predicted to enable damaged DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in DNA metabolic process. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be part of ERCC4-ERCC1 complex and nucleotide-excision repair factor 1 complex. Human ortholog(s) of this gene implicated in several diseases, including bone cancer (multiple); carcinoma (multiple); cerebrooculofacioskeletal syndrome 4; hematologic cancer (multiple); and transient cerebral ischemia. Orthologous to human ERCC1 (ERCC excision repair 1, endonuclease non-catalytic subunit). |
| description |
|---|
| DNA excision repair protein ERCC-1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036959425.1 | False | 1381 | mRNA | 0.52 | 9 | 45932805 | 45940900 |
| TU2077187 | True | 794 | lncRNA | 0.50 | 8 | 45934077 | 45940891 |
45,925,000
45,926,000
45,927,000
45,928,000
45,929,000
45,930,000
45,931,000
45,932,000
45,933,000
45,934,000
45,935,000
45,936,000
45,937,000
45,938,000
45,939,000
45,940,000
45,941,000
45,942,000
45,943,000
45,944,000
45,945,000
NC_048586.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110501938 | LOC106582481 | coding | upstream | 61264 | 45869308 ~ 45871541 (+) |
| LOC110501937 | LOC106582489 | coding | upstream | 91786 | 45838735 ~ 45841019 (+) |
| gatd3a | LOC106582488 | coding | upstream | 179715 | 45627869 ~ 45753090 (+) |
| LOC110501934 | LOC106582485 | coding | upstream | 250790 | 45669820 ~ 45682015 (+) |
| LOC110502172 | fam160a2 | coding | upstream | 276712 | 45606721 ~ 45656093 (+) |
| LOC110501949 | LOC106582502 | coding | downstream | 13463 | 45954363 ~ 45971125 (+) |
| LOC100136162 | gbp | coding | downstream | 40704 | 45981604 ~ 46008178 (+) |
| LOC110501948 | LOC106582500 | coding | downstream | 87649 | 46028549 ~ 46088009 (+) |
| serpine3 | LOC106582496 | coding | downstream | 166394 | 46107294 ~ 46115457 (+) |
| LOC110501947 | LOC106582498 | coding | downstream | 216312 | 46157212 ~ 46170323 (+) |
| G1815667 | NA | non-coding | upstream | 4520 | 45927808 ~ 45928285 (+) |
| G1815653 | NA | non-coding | upstream | 6326 | 45902806 ~ 45926479 (+) |
| G1815638 | NA | non-coding | upstream | 64099 | 45868451 ~ 45868706 (+) |
| G1815637 | NA | non-coding | upstream | 67596 | 45864983 ~ 45865209 (+) |
| G1815628 | NA | non-coding | upstream | 85007 | 45847524 ~ 45847798 (+) |
| G1815657 | NA | non-coding | downstream | 1015 | 45941915 ~ 45943882 (+) |
| G1815643 | NA | non-coding | downstream | 5322 | 45946222 ~ 45948045 (+) |
| G1815695 | NA | non-coding | downstream | 45729 | 45986629 ~ 45987016 (+) |
| G1815783 | NA | non-coding | downstream | 74120 | 46015020 ~ 46015271 (+) |
| G1815137 | NA | other | upstream | 150269 | 45781499 ~ 45782536 (+) |
| G1815113 | LOC106582487 | other | upstream | 206477 | 45725039 ~ 45726328 (+) |
| LOC110502177 | LOC106582482 | other | upstream | 405365 | 45521920 ~ 45527893 (+) |
| LOC110501942 | atp5g2 | other | upstream | 757333 | 45172891 ~ 45175477 (+) |
| G1814811 | NA | other | upstream | 821576 | 45110547 ~ 45111229 (+) |
| G1815855 | NA | other | downstream | 235707 | 46176607 ~ 46177757 (+) |
| G1816074 | NA | other | downstream | 393940 | 46334840 ~ 46335370 (+) |
| G1816206 | LOC106581610 | other | downstream | 811991 | 46752891 ~ 46770563 (+) |
| G1816706 | NA | other | downstream | 1143360 | 47084260 ~ 47085389 (+) |
