LOC110501961 (LOC106582505)


Basic Information

Item Value
gene id LOC110501961
gene name LOC106582505
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 47628880 ~ 47635640 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959453.1
ACTCAGTCACCTTGTAAACGTGAGTGTATCTCTGTTCACGTGGGCCAGGCCGGAGTCCAGATGGGCAACACCTGTTGGGAGCTGTACTGCCTGGAGCATGGGATCCAGCCGGACGGACAGATGCCCAGTGACAAGCCCACAGGTAACCTCGACGACTCCTTCACCACCTTCTTCAGCGCCACGGGCACCGGGAAGTACGTGCCACGCGCCATCTTCGTCGACCTGGAGCCCACCGTTATCGATGAGGTGAGGACAGGCACCTATCGCCAGCTGTTCCACCCTGAGCAGCTCATCTCAGGCAAGGAGGATGCTGCCAACAACTACGCCCGCGGTCACTACACCATCGGCAAGGAGATCATTGACTCCGTCCTGGATAGGATCCGTAAACTGGCTGACCAGTGTACTGGTCTCCAAGGTTTCCTGGTTTTCCACAGCTTCGGAGGAGGCACCGGTTCTGGTTTCACCTCCCTGCTGATGGAACGTCTGTCTGTCGACTTTGGCAAGAAGTCTAAGCTGGAGTTTGCCATCTATCCAGCTCCCCAGGTGTCCACAGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACTCACACCACCCTGGAGCACTCTGACTGTGCCTTCATGGTGGACAATGAGGCCATCTATGACATCTGCCGTAGGAACCTTGACATTGAGCGTCCCTCGTACACCAACCTCAACAGGCTGATCAGTCAGATCGTCTCCTCCATCACTGCCTCCCTGCGTTTCGATGGAGCCCTGAATGTTgatctgacagagttccagaccaACTTGGTGCCCTACCCCCGTATCCACTTCCCTCTGGCCACCTATGCCCCGGTCATCTCCGCTGAGAAGGCCTATCACGAGCAGCTGTCAGTGGCTGAGATCACCAATGCCTGCTTTGAGCCGGCCAATCAGATGGTGAAATGTGACCCCCGTCATGGCAAATACATGGCCTGCTGTCTCCTGTACCGTGGTGACGTTGTTCCCAAGGATGTCAATGTGGCGATCGCTGCCATCAAAACCAAGAGGAGTATCCAGTTTGTGGACTGGTGTCCCACTGGCTTCAAGGTGGGTATCAACTACCAGCCCCCTACGGTGGTTCCTGGAGGAGACCTGGCCAAGGTCCAGAGGGCTGTGTGCATGCTGAGTAACACCACAGCCATCGCCGAGGCCTGGGCCCGTCTGGACCACAAGTTTGACCTGATGTATGCCAAGAGAGCCTTCGTGCACTGGTACGTTGGTGAGGGCATGGAGGAGGGAGAGTTCTCTGAGGCCAGAGAAGACATGGCAGCCCTGGAGAAGGATTATGAAGAGGTGGGCATCGACTCGTTTGAGGAGGGGGAAGAAGGAGAAGAGTATTAAACAACGAATTAGCTGGTTTGGTTCCGGAACAAAATGAATGTTACAAGGTTAATTGCCAAATGAGTCCAAAAGGAGCAATCAAATATTTTGGTTATTGTATCTTAATTATCAAAACTGTATTTAATGTGTATGTCGTTCACACTGAGTTTAATATCCACATCATGAAATTCCACATCTTAGACAAATTTAGAAATGAAAAATTGCTGAAAAAGTTACCCCTTTTTCTTTGATTTGAAGAATACTGTTGCCTTGCCAATGTTTTCCTTTTTTTTACTGAGTTATTCTAAATCAGTGTTTTATTAAACGCTAAAGCAGAAGTTGTACAGGAACATGCTAGTTTTTATAATGAGGCCCTCATCAATAATGTATAATGTCCAAGCTCAATAAAGTTATCCTCAAAATAAA
>XM_021579839.2
ACCTGTGCCAGTAGCCTACGGTCGGACAATTTGCGCATTCTAATAAATTACACGACGGGAGGAGAGCTCCATTCCATGACGCCACTACATTGAATATAGCGTGATTAGCAGCTCCACCACACCGGGCACAACTAACTCACGGAGATCACTTTGACGGCCGCTGAGGGAAGTCCAACATATTCCTCTGATATTATTTTCTCCGTTTAGCCAAGAGACTGATACTGCAAAAGCACAATGCGTGAGTGTATCTCTGTTCACGTGGGCCAGGCCGGAGTCCAGATGGGCAACACCTGTTGGGAGCTGTACTGCCTGGAGCATGGGATCCAGCCGGACGGACAGATGCCCAGTGACAAGCCCACAGGTAACCTCGACGACTCCTTCACCACCTTCTTCAGCGCCACGGGCACCGGGAAGTACGTGCCACGCGCCATCTTCGTCGACCTGGAGCCCACCGTTATCGATGAGGTGAGGACAGGCACCTATCGCCAGCTGTTCCACCCTGAGCAGCTCATCTCAGGCAAGGAGGATGCTGCCAACAACTACGCCCGCGGTCACTACACCATCGGCAAGGAGATCATTGACTCCGTCCTGGATAGGATCCGTAAACTGGCTGACCAGTGTACTGGTCTCCAAGGTTTCCTGGTTTTCCACAGCTTCGGAGGAGGCACCGGTTCTGGTTTCACCTCCCTGCTGATGGAACGTCTGTCTGTCGACTTTGGCAAGAAGTCTAAGCTGGAGTTTGCCATCTATCCAGCTCCCCAGGTGTCCACAGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACTCACACCACCCTGGAGCACTCTGACTGTGCCTTCATGGTGGACAATGAGGCCATCTATGACATCTGCCGTAGGAACCTTGACATTGAGCGTCCCTCGTACACCAACCTCAACAGGCTGATCAGTCAGATCGTCTCCTCCATCACTGCCTCCCTGCGTTTCGATGGAGCCCTGAATGTTgatctgacagagttccagaccaACTTGGTGCCCTACCCCCGTATCCACTTCCCTCTGGCCACCTATGCCCCGGTCATCTCCGCTGAGAAGGCCTATCACGAGCAGCTGTCAGTGGCTGAGATCACCAATGCCTGCTTTGAGCCGGCCAATCAGATGGTGAAATGTGACCCCCGTCATGGCAAATACATGGCCTGCTGTCTCCTGTACCGTGGTGACGTTGTTCCCAAGGATGTCAATGTGGCGATCGCTGCCATCAAAACCAAGAGGAGTATCCAGTTTGTGGACTGGTGTCCCACTGGCTTCAAGGTGGGTATCAACTACCAGCCCCCTACGGTGGTTCCTGGAGGAGACCTGGCCAAGGTCCAGAGGGCTGTGTGCATGCTGAGTAACACCACAGCCATCGCCGAGGCCTGGGCCCGTCTGGACCACAAGTTTGACCTGATGTATGCCAAGAGAGCCTTCGTGCACTGGTACGTTGGTGAGGGCATGGAGGAGGGAGAGTTCTCTGAGGCCAGAGAAGACATGGCAGCCCTGGAGAAGGATTATGAAGAGGTGGGCATCGACTCGTTTGAGGAGGGGGAAGAAGGAGAAGAGTATTAAACAACGAATTAGCTGGTTTGGTTCCGGAACAAAATGAATGTTACAAGGTTAATTGCCAAATGAGTCCAAAAGGAGCAATCAAATATTTTGGTTATTGTATCTTAATTATCAAAACTGTATTTAATGTGTATGTCGTTCACACTGAGTTTAATATCCACATCATGAAATTCCACATCTTAGACAAATTTAGAAATGAAAAATTGCTGAAAAAGTTACCCCTTTTTCTTTGATTTGAAGAATACTGTTGCCTTGCCAATGTTTTCCTTTTTTTTACTGAGTTATTCTAAATCAGTGTTTTATTAAACGCTAAAGCAGAAGTTGTACAGGAACATGCTAGTTTTTATAATGAGGCCCTCATCAATAATGTATAATGTCCAAGCTCAATAAAGTTATCCTCAAAATAAA

Function

NR:

description
PREDICTED: tubulin alpha chain-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959453.1 False 1770 mRNA 0.51 4 47628880 47632649
XM_021579839.2 True 1989 mRNA 0.50 4 47628880 47635640

Neighbor

gene id symbol gene type direction distance location
cfap65 cfap65 coding downstream 75271 47476398 ~ 47553609 (-)
trpm2 LOC106582587 coding downstream 368414 47170403 ~ 47260466 (-)
LOC110501994 hnmt coding downstream 525052 47086871 ~ 47103828 (-)
LOC110501995 hnmt coding downstream 567553 47042225 ~ 47061327 (-)
spopla spopl coding downstream 654748 46869775 ~ 46974132 (-)
ptprna LOC106582506 coding upstream 97579 47733219 ~ 47834254 (-)
tmem198a LOC106582514 coding upstream 261417 47897057 ~ 47972131 (-)
LOC110501953 ihh coding upstream 422211 48057851 ~ 48064453 (-)
LOC110501956 itgav coding upstream 504121 48139761 ~ 48220042 (-)
LOC110502188 LOC106582504 coding upstream 869805 48505445 ~ 48645921 (-)
G1817353 NA non-coding downstream 12895 47615182 ~ 47615985 (-)
G1817352 NA non-coding downstream 14461 47614216 ~ 47614419 (-)
G1817341 NA non-coding downstream 51651 47576989 ~ 47577229 (-)
G1817329 NA non-coding downstream 77149 47549821 ~ 47551731 (-)
G1817319 NA non-coding downstream 101587 47520314 ~ 47527293 (-)
G1817368 NA non-coding upstream 8730 47644370 ~ 47645779 (-)
G1817376 NA non-coding upstream 41636 47677276 ~ 47677970 (-)
G1817380 NA non-coding upstream 47837 47683477 ~ 47712089 (-)
G1817406 NA non-coding upstream 93717 47729357 ~ 47730208 (-)
G1817416 NA non-coding upstream 115053 47750693 ~ 47751260 (-)
G1817287 LOC106582526 other downstream 155496 47471294 ~ 47473384 (-)
G1816929 NA other downstream 226833 47400985 ~ 47402047 (-)
G1816841 NA other downstream 402234 47225551 ~ 47226646 (-)
G1815615 LOC106582489 other downstream 1787898 45838750 ~ 45840982 (-)
G1814480 NA other downstream 2954992 44673447 ~ 44673888 (-)
G1817668 NA other upstream 633147 48268787 ~ 48291496 (-)
G1817836 NA other upstream 823386 48459026 ~ 48460040 (-)
G1817968 NA other upstream 833958 48469598 ~ 48470035 (-)
G1818059 NA other upstream 991724 48627364 ~ 48627846 (-)

Expression


Co-expression Network