ptprna (LOC106582506)


Basic Information

Item Value
gene id ptprna
gene name LOC106582506
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 47733219 ~ 47834254 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959458.1
TTGGAATGTCGTGTgtcatacgtgtgtgtgtgttcccctttCCCTTTAGCTCAAACCCACAGTTATTACACTTTAGCCAAGGTTTGGTTTCCGTTACCTGGCGTGAATCCAGCGGGGTATAGGTCTGGTCGCAGCTCCGAGAAATAACATGGGGATTTGAATAGAGTCATAAGGGACGGAATTGGATCGTGAAGCCTACATCAGAAAGTAGCAGTCTTTTGTAGGTGGTGTCTGTCTAAAAATGAAGCGCCCGAGGCTATGGAGAGTGTTGTTTTTCATGACGCTGTTGTACCATCTTGGGATGTCAAGCAGATACGgttgtgTGTTTGAGAGGAGGCTGTGCTCCAGGGAGCAGTTCTGCTCTgacgACGGTCTCTTTGGGCAATGCCGTACCTCTAAGCAGGACCAGGTGCAGTACCAGGTGTCGGTTCCTGTTCTGAAGAGGATGCAGGAAGTCCTCAAACAGctcacactgcaggGTCTGTCCTGGCAAGATGACATCACCCAGTACATTGTTACCAAAGAGCTGAGCAGAGTTCCTCACACCCCGAGACCCTCCAAGACCTCTTCCTCACAACCCAAGCAGAGCTCCTCCAATCAGGGAGGATACCCCAGCAGCTCCTCCAATCAGGGAGGATACCCCAGCAGCTCCTCCAATCAGGGAGGATACCCCAGCAGCTCCTCCAATCAGGGAGGATACCCCAGCAGCTCCTCCAATCAGGGAGGATACCCCAGCAGCTCCTCCAATCAGGGAGGATACCCCAGCAGCTCCTCCAATCGGGGAGGATACCCCAGCAGCTCCTCCAATCGGGGAGGATACCCCAGCAGCTCCTCCAATCAGGGAGGATACCCCAGTCAGGCTGACAGCCACCAGGACTACATGATAGTAGACCATGCCCAGTTCCCCCTCCGCATGCAGACCTCTCCCATGGACCCCTATACTTATCAACAGCACAGATACCAGGAAGATGTAGAGCGCTCCCTCCACCAGGGAGGAGGAGTCTACCCAGggccccacccctcctcctctagaTCCCAACAggccaaacagagagagagagaccgtcaacTGCTGCAGGACGTcatctccctctatctgtcctcttcCCCTGCACAGCCCTCGTTCCGCCACAGGGGGGCAGCAGCACTTCCGGCCTCGCCCTACTACGAGGACCTGGAACTGCCTCTGGACTATGTGGAGGACTACAGTCTGACAGAGCAGGATACGGCCAGGCAACAGCAACAACAGAAGAAGATACGGTTACAACTACAACAACAGAAGAAGAAGGTTCCTCAGGACTACAGCTCTCTGGCTGGGCTGGATGAGTCTATCCTACAGCGTATGGTGGAGACCCTGGAGATGTACGGTGTTGATCCTAGAGACCTGACCCCCCAGCAGCTCTACAGACTTGCTGTGGTGCTGCAAAGGATGAAGGCTGACGACCAGGAGAACGCAGACCCGTTTACCAATGAACCGATCACACCGAAGGAGAAACAGCAGATGCTTAAAAACAGTGACACCGTGTCCAACAAAGGAGAGAAtgctcccctccctgtcccctctccttcctctacctcGGTAGCTGATGTGGCCCCTACCCTGGCCCCTGCTGCCACTAGTCCCACCCTCAAAGCACCTATAGGGGTCAGTGTGACAGCCAAGggctcctctgtctctgtggaggatgtgaaagagaaggtgaaaagctCCAATGTCCCAGCAGGGCTACCAGCTGCTGAGAGGGGAACAGCAGCTAGGGAGGAGTATGGATACATTGTCACCAACCAGAGTCCTCTCAGTCTGTATGATGGGGTGAAACTACTGGAACTATTGGCAGAGAGAATTCACCTGACTACCAGCAGCTTCATCAACATCAGTGTTGTGGGTCCAGCCCTGACGTtcaggatcaggcaaaaccctcAGAATATGAGTGCAGAGGACGTGGCTGAGAAGGCTGTGTCTGAGAAGACCTTTCTGGAGTCTGAGACGGGACTGAAGATCCTGCAGACTGGTGTGGGAGAGaGGAGCGAGGGTCATGGGCTGCCCCATGCCACGCGGGTGAGGGAGGGCTCCAGTGGGCTTGTACTGACGCTGGTGTCCATGGCATGTGTGGGCGGCGTGGTGGTGGTAGCGTTGACCATCGCCTGTCTCAGACACCACACCCAGCAGCCGGCCTCAAGGAAACTGGGCCTCGGACCAGAGGGTGGACCGGAGACACACTTTGACtaccagGAGCTCTGCCGGCAGCACATGGCAGCCAAGACTTCGCTCAGTCGTCAGGAGGCGGTGGGTGTGGGAGCGGGGGGTCGGAGGGGGACAGACACCTCCAGGGTGAGCAGTGTGTCGTCCCAGTTCAGTGACGGCCCACAACACAGCCCCTCCTCACACAGCAGTACGCCCTCCTGGAGCGAGGAGCCCGCCCAGTCCAAGATGGACATCTCTACTGGTCACATGATACTGGCCTACATGGAGGATCATCTGAAGGATAAGGACCGTCTGATGAAGGAATGGAACGCTCTACGTTCCTACCAGGCTGAACCCAGTGCTGTCACCGTCGGGCAGAGTGAATCCCACCTGGAGAAAAACCGCtgccctgagtctcttccctatGACCACTCCCGTGTGAAACTGAAGACAGAGAGCAACTCCACCAAGGAAGACTACATTAACGCCAGCATCATAATTGACCACGATCCTCGACTGCCTGCTTACATCGCCACCCAGGGACCACTGGCACACACCATCGCTGACTTCTGGCAGATGGTGTGGGAGAATGGCTGCACagtgatagtgatgatgactgCCCTGGTTGAGGACGGAGAGACTCAGTGTGTTCGCTACTGGCCTGACGAGGGATCGTCCCTCTACCACATCTACGAGGTGAACTTGGTCTCTGAACACATCTGGTGTAAGGACTTCCTGGTTCGTAGTTTCTACCTGAAGAACGTTCAGACCCAGGAGACTCGAACCCTGACACAGTTCCATCTGCTCAGCTGGCCCGCCAACGGAATCCCTACCTCCACACGCCCTCTGCTGGACTTCCGCAGGAAGGTGAATAGGTGCTACAGAGGTAGATCCTGCCCCATCATCGTCCACTGCAGTGACGGCACTGGCAGAACGGGAACCTACATCCTTATTGACATGGTCATCAATCGCATGGCTAAGGGCGCGAAGGAGATCGATATTGCTGCGACATTGGAACACATTCGAGACCAGAGACCGAGCTTAGTTCACACCAAGgACCAGTTTGAGTTTGCCCTGACCGCCGTGGCAGAAGAGGTCAATGCCATCCTGAAAGCTCTGCCGCAGTGaaccctaccacctctaccacctctaccaccggTGCCACAAACCAGGGAGGAACTACATTTCCCAGAGTGCAATTACTATTACTGAAGCCTGGTTTGTGTTGCCTCGCCAACTCTTTTAGTCATTGTCACACCAATACAGCATTAACAGATCTAGAATCAAGGTTCTGTTATTATGCTTTCATATCTAAATGAAATGTGGTTTCAAAGAATCCTCGAGATTATTCCGATCAGACAAGAATACTTCAAATGGACAGTAGGACTGTGACTTGATACTGTACCTCTACTCCTTACTCACTAGTGATACTACAATTACCAtctgttgtcatggagatgtTGTATTACCATGCTCCCTCCTGAtctgttgtcatggagatgtTGTATTACCATACTCCCTCCTGATTTGTTGTCATGGAGATGTTGTATTACCATGTTCCCTCCTGAtctgttgtcatggagatgtTGTATTACCATGCTTCCTCCTGAtctgttgtcatggagatgtTATTTTACCATGCTCCCTCCTGAtctgttgtcatggagatgtTGTATTACCATGCTCCCTCCTGAtctgttgtcatggagatgtTGTATTACCATGCTTCCTCCTGAtctgttgtcatggagatgtTATTTTACCATGCTCCCTCCTGAtctgttgtcatggagatgtAAAACCAGTCATTGTACTCTAGTAGGGAGTCATCCTTTTGGCATAACAGCATATAAGGCCCAAGGCTCATACACTTGTATAAGCAAGATGACAACAAAGCCTGACTATGGCGAGGGTGAAGTGAGTGACATACTAGTGTATTATAGGTTACACCAGTTTCTCTAAGGAGCTGGTTTATACCTCTAACTTTAACTCTAAACCTAATGATTTATTTCTATCCATTTTGTAATGGAACTATTACTGTACACTGACTACCTAATCACTCACATCTGAATCATATCAATAAGTGTCTTCGGTGTTACTGTAAAACCTCTGTGATTTATTGTAAATAATTCACCTGATTTATTTCTTAAATGTGTATTAATGTAGCAAACATAGAAAACaactataaaaaaatatttttaactcGATGTATGTAATTAAATCTCTATTGTGATGTGGTGCAACAGCA
>XM_036959457.1
ATTTGGAATGTCGTGTgtcatacgtgtgtgtgtgttcccctttCCCTTTAGCTCAAACCCACAGTTATTACACTTTAGCCAAGGTTTGGTTTCCGTTACCTGGCGTGAATCCAGCGGGGTATAGGTCTGGTCGCAGCTCCGAGAAATAACATGGGGATTTGAATAGAGTCATAAGGGACGGAATTGGATCGTGAAGCCTACATCAGAAAGTAGCAGTCTTTTGTAGGTGGTGTCTGTCTAAAAATGAAGCGCCCGAGGCTATGGAGAGTGTTGTTTTTCATGACGCTGTTGTACCATCTTGGGATGTCAAGCAGATACGgttgtgTGTTTGAGAGGAGGCTGTGCTCCAGGGAGCAGTTCTGCTCTgacgACGGTCTCTTTGGGCAATGCCGTACCTCTAAGCAGGACCAGGTGCAGTACCAGGTGTCGGTTCCTGTTCTGAAGAGGATGCAGGAAGTCCTCAAACAGctcacactgcaggGTCTGTCCTGGCAAGATGACATCACCCAGTACATTGTTACCAAAGAGCTGAGCAGAGTTCCTCACACCCCGAGACCCTCCAAGACCTCTTCCTCACAACCCAAGCAGAGCTCCTCCAATCAGGGAGGATACCCCAGCAGCTCCTCCAATCAGGGAGGATACCCCAGCAGCTCCTCCAATCAGGGAGGATACCCCAGCAGCTCCTCCAATCAGGGAGGATACCCCAGCAGCTCCTCCAATCAGGGAGGATACCCCAGCAGCTCCTCCAATCAGGGAGGATACCCCAGCAGCTCCTCCAATCGGGGAGGATACCCCAGCAGCTCCTCCAATCGGGGAGGATACCCCAGCAGCTCCTCCAATCAGGGAGGATACCCCAGTCAGGCTGACAGCCACCAGGACTACATGATAGTAGACCATGCCCAGTTCCCCCTCCGCATGCAGACCTCTCCCATGGACCCCTATACTTATCAACAGCACAGATACCAGGAAGATGTAGAGCGCTCCCTCCACCAGGGAGGAGGAGTCTACCCAGggccccacccctcctcctctagaTCCCAACAggccaaacagagagagagagaccgtcaacTGCTGCAGGACGTcatctccctctatctgtcctcttcCCCTGCACAGCCCTCGTTCCGCCACAGGGGGGCAGCAGCACTTCCGGCCTCGCCCTACTACGAGGACCTGGAACTGCCTCTGGACTATGTGGAGGACTACAGTCTGACAGAGCAGGATACGGCCAGGCAACAGCAACAACAGAAGAAGATACGGTTACAACTACAACAACAGAAGAAGAAGGTTCCTCAGGACTACAGCTCTCTGGCTGGGCTGGATGAGTCTATCCTACAGCGTATGGTGGAGACCCTGGAGATGTACGGTGTTGATCCTAGAGACCTGACCCCCCAGCAGCTCTACAGACTTGCTGTGGTGCTGCAAAGGATGAAGGCTGACGACCAGGAGAACGCAGACCCGTTTACCAATGAACCGATCACACCGAAGGAGAAACAGCAGATGCTTAAAAACAGTGACACCGTGTCCAACAAAGGAGAGAAtgctcccctccctgtcccctctccttcctctacctcGGTAGCTGATGTGGCCCCTACCCTGGCCCCTGCTGCCACTAGTCCCACCCTCAAAGCACCTATAGGGGTCAGTGTGACAGCCAAGggctcctctgtctctgtggaggatgtgaaagagaaggtgaaaagctCCAATGTCCCAGCAGGGCTACCAGCTGCTGAGAGGGGAACAGCAGCTAGGGAGGAGTATGGATACATTGTCACCAACCAGAGTCCTCTCAGTCTGTATGATGGGGTGAAACTACTGGAACTATTGGCAGAGAGAATTCACCTGACTACCAGCAGCTTCATCAACATCAGTGTTGTGGGTCCAGCCCTGACGTtcaggatcaggcaaaaccctcAGAATATGAGTGCAGAGGACGTGGCTGAGAAGGCTGTGTCTGAGAAGACCTTTCTGGAGTCTGAGACGGGACTGAAGATCCTGCAGACTGGTGTGGGAGAGaGGAGCGAGGGTCATGGGCTGCCCCATGCCACGCGGGTGAGGGAGGGCTCCAGTGGGCTTGTACTGACGCTGGTGTCCATGGCATGTGTGGGCGGCGTGGTGGTGGTAGCGTTGACCATCGCCTGTCTCAGACACCACACCCAGCAGCCGGCCTCAAGGAAACTGGGCCTCGGACCAGAGGGTGGACCGGAGACACACTTTGACtaccagGAGCTCTGCCGGCAGCACATGGCAGCCAAGACTTCGCTCAGTCGTCAGGAGGCGGTGGGTGTGGGAGCGGGGGGTCGGAGGGGGACAGACACCTCCAGGGTGAGCAGTGTGTCGTCCCAGTTCAGTGACGGCCCACAACACAGCCCCTCCTCACACAGCAGTACGCCCTCCTGGAGCGAGGAGCCCGCCCAGTCCAAGATGGACATCTCTACTGGTCACATGATACTGGTCAGTGTCAGGGCCTACATGGAGGATCATCTGAAGGATAAGGACCGTCTGATGAAGGAATGGAACGCTCTACGTTCCTACCAGGCTGAACCCAGTGCTGTCACCGTCGGGCAGAGTGAATCCCACCTGGAGAAAAACCGCtgccctgagtctcttccctatGACCACTCCCGTGTGAAACTGAAGACAGAGAGCAACTCCACCAAGGAAGACTACATTAACGCCAGCATCATAATTGACCACGATCCTCGACTGCCTGCTTACATCGCCACCCAGGGACCACTGGCACACACCATCGCTGACTTCTGGCAGATGGTGTGGGAGAATGGCTGCACagtgatagtgatgatgactgCCCTGGTTGAGGACGGAGAGACTCAGTGTGTTCGCTACTGGCCTGACGAGGGATCGTCCCTCTACCACATCTACGAGGTGAACTTGGTCTCTGAACACATCTGGTGTAAGGACTTCCTGGTTCGTAGTTTCTACCTGAAGAACGTTCAGACCCAGGAGACTCGAACCCTGACACAGTTCCATCTGCTCAGCTGGCCCGCCAACGGAATCCCTACCTCCACACGCCCTCTGCTGGACTTCCGCAGGAAGGTGAATAGGTGCTACAGAGGTAGATCCTGCCCCATCATCGTCCACTGCAGTGACGGCACTGGCAGAACGGGAACCTACATCCTTATTGACATGGTCATCAATCGCATGGCTAAGGGCGCGAAGGAGATCGATATTGCTGCGACATTGGAACACATTCGAGACCAGAGACCGAGCTTAGTTCACACCAAGgACCAGTTTGAGTTTGCCCTGACCGCCGTGGCAGAAGAGGTCAATGCCATCCTGAAAGCTCTGCCGCAGTGaaccctaccacctctaccacctctaccaccggTGCCACAAACCAGGGAGGAACTACATTTCCCAGAGTGCAATTACTATTACTGAAGCCTGGTTTGTGTTGCCTCGCCAACTCTTTTAGTCATTGTCACACCAATACAGCATTAACAGATCTAGAATCAAGGTTCTGTTATTATGCTTTCATATCTAAATGAAATGTGGTTTCAAAGAATCCTCGAGATTATTCCGATCAGACAAGAATACTTCAAATGGACAGTAGGACTGTGACTTGATACTGTACCTCTACTCCTTACTCACTAGTGATACTACAATTACCAtctgttgtcatggagatgtTGTATTACCATGCTCCCTCCTGAtctgttgtcatggagatgtTGTATTACCATACTCCCTCCTGATTTGTTGTCATGGAGATGTTGTATTACCATGTTCCCTCCTGAtctgttgtcatggagatgtTGTATTACCATGCTTCCTCCTGAtctgttgtcatggagatgtTATTTTACCATGCTCCCTCCTGAtctgttgtcatggagatgtTGTATTACCATGCTCCCTCCTGAtctgttgtcatggagatgtTGTATTACCATGCTTCCTCCTGAtctgttgtcatggagatgtTATTTTACCATGCTCCCTCCTGAtctgttgtcatggagatgtAAAACCAGTCATTGTACTCTAGTAGGGAGTCATCCTTTTGGCATAACAGCATATAAGGCCCAAGGCTCATACACTTGTATAAGCAAGATGACAACAAAGCCTGACTATGGCGAGGGTGAAGTGAGTGACATACTAGTGTATTATAGGTTACACCAGTTTCTCTAAGGAGCTGGTTTATACCTCTAACTTTAACTCTAAACCTAATGATTTATTTCTATCCATTTTGTAATGGAACTATTACTGTACACTGACTACCTAATCACTCACATCTGAATCATATCAATAAGTGTCTTCGGTGTTACTGTAAAACCTCTGTGATTTATTGTAAATAATTCACCTGATTTATTTCTTAAATGTGTATTAATGTAGCAAACATAGAAAACaactataaaaaaatatttttaactcGATGTATGTAATTAAATCTCTATTGTGATGTGGTGCAACAGCA

Function

NR:

description
LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase-like N

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K07817 PTPRN; receptor-type tyrosine-protein phosphatase N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959458.1 False 4433 mRNA 0.51 23 47733219 47834252
XM_036959457.1 True 4447 mRNA 0.51 23 47733219 47834254

Neighbor

gene id symbol gene type direction distance location
LOC110501961 LOC106582505 coding downstream 97579 47628880 ~ 47635640 (-)
cfap65 cfap65 coding downstream 179610 47476398 ~ 47553609 (-)
trpm2 LOC106582587 coding downstream 472753 47170403 ~ 47260466 (-)
LOC110501994 hnmt coding downstream 629391 47086871 ~ 47103828 (-)
LOC110501995 hnmt coding downstream 671892 47042225 ~ 47061327 (-)
tmem198a LOC106582514 coding upstream 62803 47897057 ~ 47972131 (-)
LOC110501953 ihh coding upstream 223597 48057851 ~ 48064453 (-)
LOC110501956 itgav coding upstream 305507 48139761 ~ 48220042 (-)
LOC110502188 LOC106582504 coding upstream 671191 48505445 ~ 48645921 (-)
LOC118943644 NA coding upstream 1127958 48962212 ~ 48964633 (-)
G1817406 NA non-coding downstream 3011 47729357 ~ 47730208 (-)
G1817380 NA non-coding downstream 21130 47683477 ~ 47712089 (-)
G1817376 NA non-coding downstream 55249 47677276 ~ 47677970 (-)
G1817368 NA non-coding downstream 87440 47644370 ~ 47645779 (-)
G1817353 NA non-coding downstream 117234 47615182 ~ 47615985 (-)
G1817448 NA non-coding upstream 6437 47840691 ~ 47840910 (-)
G1817451 NA non-coding upstream 18107 47852361 ~ 47852641 (-)
G1817460 NA non-coding upstream 35766 47870020 ~ 47877837 (-)
G1817479 NA non-coding upstream 87282 47921536 ~ 47922173 (-)
G1817526 bin1 non-coding upstream 153913 47988167 ~ 48010646 (-)
G1817287 LOC106582526 other downstream 259835 47471294 ~ 47473384 (-)
G1816929 NA other downstream 331172 47400985 ~ 47402047 (-)
G1816841 NA other downstream 506573 47225551 ~ 47226646 (-)
G1815615 LOC106582489 other downstream 1892237 45838750 ~ 45840982 (-)
G1814480 NA other downstream 3059331 44673447 ~ 44673888 (-)
G1817668 NA other upstream 434533 48268787 ~ 48291496 (-)
G1817836 NA other upstream 624772 48459026 ~ 48460040 (-)
G1817968 NA other upstream 635344 48469598 ~ 48470035 (-)
G1818059 NA other upstream 793110 48627364 ~ 48627846 (-)

Expression


Co-expression Network