tmem198a (LOC106582514)


Basic Information

Item Value
gene id tmem198a
gene name LOC106582514
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 47897057 ~ 47972131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959461.1
TGTGCACATGGTATCATCCAAGGAAAGCTGGGGCTGCACGATGCTTGCAGGGGAAGCGTGAACACAAAGAAACCACAGCCGTCGGATTGGGAAGAACAAAAGACAAGAAATCTCAAACCAAGTGATGAACCCGATTTATGACAACAGTTTATATTAAAAACAGTCTTGATTTTCCATTTCTATCCATATTCGAACCATTATTTACATGGCATATGATAGGAGGGGGACATTACACTGCCGTTATACAGGAGAGAGTGAAGCTTGAGCGGTGAGACGTTGTTCTAGTGTTTCCCGATGGCTTGGTGTTCGTGggcagtgctctctctctgccAAGCCGTGGTCCCGGTGCCTCTGTAGCGTTTGGGGCGGACAGGGACTGCGTTGACGGTTGAGGACGATGACTGTCTTGGAGGCTGCTAgttgacacagaggagaggattCAACGGAATCTGACTGGGCATATATCTTGTACATGCTGGGTCGTTACGGAGgtggatCATTTTGGATGGGTAACATCGTGCCCTGATCCTCCCTGTCCCGGCCCACCTATACAACCCCTGATCCCCCCCCACCCTAGTCACCATGACATCTGCATCCTGGCCCCAGCTGCTGGCTTTCAAACTGGTCCCTCCACCACATGACCCGGGGAGCCCAGAGAGGATCTTCAGCTGCGACGAGGAGATAGAGCGTCGTTATGAGATCGTTCCCTCTGTGGCCTGCTCCATGTGCTGCCTCTTCGGCATCATATACTGCTTCTTTGGTTACCGTTGCTTCAAGGCGGTGATGTTCCTAACAGGCTTGATGTTTGGCTCCGTCATCATCTTTCTGCTTTGTTATAAGGAGCGTGTTCTGGACACCCAGCTGAGTGTGGAGGCCTCGGTGGGCATCGGCCTGGGCATCGGTACCCTCTGTGGCCTGGTCACCATGCTGGTACGCTCTGTTGGACTATACATGGTGGGGCTACTGCTGGGACTACTGCTAGGCATCGCCTCACTGGTGGTCATGGAGGAGTTCCACCACCCGCGGACGGTGTGGGTGCCCCTGGGGGTGTTGCTGGGGTCAGGCATGCTGTTCGCCGTCCTCACCCTCCAATGGCAGCGCTTCTTCACCACCCTCTCCACCGCTGTGTTCGGCTCGGCTGTCATCACCGTCACTGTGGACTATTTCATTGAACTGTTTGCCCTCGTCAGATACATATTTGAGAGGATCAAGGTGGCTCCACCCCGTCCTGTCTGCTGGTTCACCTGGGTCATCATGGGGGTGTGGCCTGTTCTAGCATTGCTGGGGGTCCTCATCCAATGGAAGGTCACCGCCGAGGGATACTCACACACTGAGGtggttcTCAGTCGACAGCAGCGGAGGGTCCAGTTGATGAGGATCCACcagaaggaagagaggatgcAGAAAGAagtgaggaagaagaagaagagacagaaGCAACAAAAGCAGAAGCAGCCGGAGCAGCTCCAGCATCAGCAGTACCACCGCCCTCCTCCACCTACCTACCCTCCTCCTACCGCCGCCACCACCACcgccaccgccaccaccaccaccaacaaaccCCTCCTCCCTGAGCCTATCACCTACCACAGGAAACCAAACCCCATTCGACGCTTCGATGGGGACGTGCTGTCCCCTAGTTACATCGCTAGTTTCCGGGACAGACAGGTGGACAGACGGGATTACCCTCACCACAGCAGGCCCATCGCCAGGCACCACATGGCTGACCGAGACTACGACTGTGGATCCCAAGTACCCCTGACCGCCCCCAATGGACCGGCTGTACGAGTTTGACATTGACAATAACCTTTATATCCCGTGACAGTGCTCCTACTGGTTTGGAGTGGTACTGTTTGTCCTTTTCCTTGTCCAGTGAAGGTCTCCAGTGTCCAGATTGAATGTCCATCTCTGGATTAAAGTAATCTGAGGTGGATATCAGAAGGTTAATGTCACCCGTCCCCTTCTCTTTTCTTTTACCTTGAAGCAAATCAGTGTCCAGACTGAGATTGACCTTTGAACCCTGCACTGACTTATtctgaggtggggggggggggtgtatagaAATGAAAGGCTTTTTGATGTCTTCCATTGTCCTCTCTTTTCATTCCGTCCTTTAGTCTGTGGGCCGTGGAACATAAAAAAACCCTGCTGTGGTTCCCTTCGTCTCGGCTCTTAAATGACATCTATTTTTGGAGCGTTATAATTTCCCCTGAACATGTATGGCAATACCTGCATAGGGTCGGTCTTAAAGGTGTGGAAGGACATTTGAACATTACCAGTAAGACATCAACTTCCCTGGAAATATGTCACAGTTGAACAGTTGAAATatcgttttttttctctctcctactGTGTGATGTGTGGGCTagtgttgatgtgttgttgtgtctaCTATCATTGtactgtgtccgtgtgtgtgtctactgcccACAGTCCATTATTAGCCCTGCACTAAGTCTCTTTTAATGTGCTCATCTTCAACGTGGCTAAGAGATGTTACCtttaaatctactgtattattcaAAGAAACCTGTTATGGCTTCGATGTTGCCTTGACTGGCCTTGTGGGGGAGATGGAGTAGAAATCACCTgctatttctctcctctcccctcccccttctcctctcccctcctctcccccttctcccctcccccttctcctctcccctcgcctcctctcccccttctcccctcctc

Function

NR:

description
PREDICTED: transmembrane protein 198-B-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959461.1 True 2697 mRNA 0.52 7 47897057 47972131

Neighbor

gene id symbol gene type direction distance location
ptprna LOC106582506 coding downstream 62803 47733219 ~ 47834254 (-)
LOC110501961 LOC106582505 coding downstream 261417 47628880 ~ 47635640 (-)
cfap65 cfap65 coding downstream 343448 47476398 ~ 47553609 (-)
trpm2 LOC106582587 coding downstream 636591 47170403 ~ 47260466 (-)
LOC110501994 hnmt coding downstream 793229 47086871 ~ 47103828 (-)
LOC110501953 ihh coding upstream 85720 48057851 ~ 48064453 (-)
LOC110501956 itgav coding upstream 167630 48139761 ~ 48220042 (-)
LOC110502188 LOC106582504 coding upstream 533314 48505445 ~ 48645921 (-)
LOC118943644 NA coding upstream 990081 48962212 ~ 48964633 (-)
LOC118943599 NA coding upstream 1497971 49470102 ~ 49480960 (-)
G1817460 NA non-coding downstream 19220 47870020 ~ 47877837 (-)
G1817451 NA non-coding downstream 44416 47852361 ~ 47852641 (-)
G1817448 NA non-coding downstream 56147 47840691 ~ 47840910 (-)
G1817416 NA non-coding downstream 145797 47750693 ~ 47751260 (-)
G1817406 NA non-coding downstream 166849 47729357 ~ 47730208 (-)
G1817526 bin1 non-coding upstream 16036 47988167 ~ 48010646 (-)
G1817540 NA non-coding upstream 57884 48030015 ~ 48030821 (-)
G1817541 NA non-coding upstream 59262 48031393 ~ 48034662 (-)
G1817543 bin1 non-coding upstream 67899 48040030 ~ 48080797 (-)
G1817549 NA non-coding upstream 103034 48075165 ~ 48076165 (-)
G1817287 LOC106582526 other downstream 423673 47471294 ~ 47473384 (-)
G1816929 NA other downstream 495010 47400985 ~ 47402047 (-)
G1816841 NA other downstream 670411 47225551 ~ 47226646 (-)
G1815615 LOC106582489 other downstream 2056075 45838750 ~ 45840982 (-)
G1814480 NA other downstream 3223169 44673447 ~ 44673888 (-)
G1817668 NA other upstream 296656 48268787 ~ 48291496 (-)
G1817836 NA other upstream 486895 48459026 ~ 48460040 (-)
G1817968 NA other upstream 497467 48469598 ~ 48470035 (-)
G1818059 NA other upstream 655233 48627364 ~ 48627846 (-)

Expression


Co-expression Network