LOC110501953 (ihh)


Basic Information

Item Value
gene id LOC110501953
gene name ihh
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 48057851 ~ 48064453 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579829.2
CAGAGTCAGAGTGATGCAAGTTAACGCCTGACGGGCCTTCTGAGGTGGCAGGCTAAGGGGCAGAGCCGGTAGCGGTGGGTAGAGGACAGGGCAGTGGCACCCACAGTGACCCGATGGGCGGAGTGGCAGAGAGGGATAGAAGGGCAGGCCTGGCAGGGTGCGGTCTCGAGTGGCAACTGATGCCTCGAATTCCCAATTCAACTGGAAAGGCAAAGCGGCAGAGACAAAAAAAACGGACAAGAAGGAGAAACGCCAGAACCAGTAGTGTTCCTCCTCGTTTGACATTGACAGCACCTCAGTGGCAAAACCACAGCATCAAGAAGACAATCTGCGACCACTGTTCACTACAGAAGATCTACTTTGAACCTGTTTGTTTAAATGAGCAGCCTTGTCAACTCCATACCCATATCTGTTGGCTCCCGACGACGAGAAAGAACAAGTTAAGCAGCGACGTTTGGACAACACCGGACTCGGACCCCGGAGACATTGAACTTTTACCCCTGCTACCGGTTCCATAAAACAAAACATTCGGCTAAATGCCTGTTTTTTGGGGCTTTTACGGACAGTTGCTGTGCGCACCGAGGATGGCGTGGATAAGGCTTATATAATATTGAAATATTCTGTCCCTTAACCTCCATTCCTTACCCTGTGGGGGGAACACGGAGCATCCAGGGGAGGGGGTAGCTTGAGACACCTCCGCAACCTGTGCCACCTTACCACTCCGCTTCGGAGTGGCCGGCCCTGCCGGTCTGGCTGGGATGCGTCTCTCCGTGCTTGTAGGGCTCTTCATCGGCTGCGCCCTGTTTCTCGCACCTGTAACCGAGGGCTGTGGGCCGGGGAGGGGATACGGCAAGAGACGTCTGCCAAAGAAGCTCACACCCCTCGCTTATAAGCAGTTCAGCCCAAACGTTGCCGAGAAAACACTGGGCGCCAGTGGCAAACACGAGGGCAAAATAACGAGAAATTCAGAACGGTTCAAAGAGCTCACTCCCAACTATAACCCTGATATCATATTTAAAGATGAGGAGAATACGGCTGCCGATCGACTTATGACCCAGcGTTGTAAAGACAAGCTGAACTCCCTGGCCATCTCTGTGATGAACATGTGGCCTGGGGTGAAGCTGAGAGTGACAGAGGGCTGGGACGAGGACGGGCACCACTCAGAGGACTCCCTCCATTATGAGGGAAGAGCGGTGGACATCACCACCTCAGACCGGGACAGGAACAAGTACTCCATGCTGGCTCGCCTGGCCGTGGAGGCTGGCTTCGACTGGGTCTACTATGAATCGAAGGCACACGTGCACTGCAGTGTCAAGTCAGaGCACTCAGTAGCAGCTAAGACCGGGGGCTGTTTCCCTGGTCGTTCTCTGGTCACTCTGGACGACGGGAGCAGCAGGGCTGTCCAGGACCTCCAGCCAGGTGACCGGGTCCTGGCCTCCTCGGGGGCTGACGGCAGCAGGAGCGGAGGAGACCTCGTCTACAGTGAGTTCTTCACCTTCCTGGATCACGAGCCTGCAGCCAGGAAACAGTTCTACGTGTTGGGAACAGAGACGGGAGCAAACCTGACCCTCACCGCGGCTCATCTTGTGTTCGTGACCGAGGCTAACTGTTCAGTGGGCGAATCGGGTGCTGTCATGCGGACTATGTTCGCCAGCGACGTACGGCCAGGACAGTGTGTGCTGACTGCAGGGAGAAACCAGGGACTACAGGGAATCCTCTCCCAGGTCATTTGGGTCCACATCCAGATGGACACCGGGGCGTTCGCCCCTCTGACACGCCACGGCTCACTGGTGGTGGACGGCGTTCTAGCCTCGTGCTACGCTGCTATGGACCAACACCACCTGGCCCACTGGGCATTTGGTCCCCTCCGCCTGCTGTACAGCTGGACCAGATGGACTGGTGCCTCTCTAGGAGACGGACTACACTGGTACTCACAAGTCCTGCATTGGTTAGGAACGTTCCTATTGGACCCTGGACATTTCCACCCCTGGGGGATGGTCATGCACGActcagagagataaagagagagaaagggaaaaaaaAGACACGGGAGGTCGCAAGTAAATTGTCCAATCAAATCTAATGTTATTTTGTCAGGTTGCTTCGTAGAAAACAGGTCTAACAGTGAAAAGCTATCTTACTGGTCCATTTCCAACAatgaataacaaataaaaataaagagtaaaaggaacatgactataaaaacgatatatacaaaagtatgtggacaacacttaaaattagtggattcggcttttTCAGCCACCCGTTGCTGCCAGGTGTATagaaaatcaagcacacagccatgcaatctccttagacaaacattggcagtagaatagccttactgaagagttcagtgactttcaacgtggcatcgtcataggatgccacctttccaacaa
>TU2079567
GCACCTGTAACCGAGGGCTGTGGGCCGGGGAGGGGATACGGCAAGAGACGTCTGCCAAAGAAGCTCACACCCCTCGCTTATAAGCAGTTCAGCCCAAACGTTGCCGAGAAAACACTGGGCGCCAGTGGCAAACACGAGGGCAAAATAACGAGAAATTCAGAACGGTTCAAAGAGCTCACTCCCAACTATAACCCTGATATCATATTTAAAGATGAGGAGAATACGGCTGCCGATCGACTTATGACCCAGcGTTGTAAAGACAAGCTGAACTCCCTGGCCATCTCTGTGATGAACATGTGGCCTGGGGTGAAGCTGAGAGTGACAGAGGGCTGGGACGAGGACGGGCACCACTCAGAGGACTCCCTCCATTATGAGGGAAGAGCGGTGGACATCACCACCTCAGACCGGGACAGGAACAAGTACTCCATGCTGGCTCGCCTGGCCGTGGAGGCTGGCTTCGACTGGGTCTACTATGAATCGAAGGCACACGTGCACTGCAGTGTCAAGTCAGGTATGGGGATGGGACTCAGAcggagcaaaaaaaaaaacagctcatTACCAACCTGTATAAAAGTACGAACTATTGTAC

Function

symbol description
ihh Enables calcium ion binding activity and patched binding activity. Involved in cartilage development; embryonic digit morphogenesis; and smoothened signaling pathway. Located in plasma membrane. Implicated in acrocapitofemoral dysplasia; brachydactyly type A1; retinopathy of prematurity; and syndactyly type 1. Biomarker of autism spectrum disorder; familial adenomatous polyposis; and osteoarthritis.

NR:

description
indian hedgehog B protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579829.2 False 2405 mRNA 0.53 3 48057851 48064453
TU2079567 True 589 TUCP 0.53 2 48062049 48063644

Neighbor

gene id symbol gene type direction distance location
tmem198a LOC106582514 coding downstream 85720 47897057 ~ 47972131 (-)
ptprna LOC106582506 coding downstream 223597 47733219 ~ 47834254 (-)
LOC110501961 LOC106582505 coding downstream 422211 47628880 ~ 47635640 (-)
cfap65 cfap65 coding downstream 504242 47476398 ~ 47553609 (-)
trpm2 LOC106582587 coding downstream 797385 47170403 ~ 47260466 (-)
LOC110501956 itgav coding upstream 75308 48139761 ~ 48220042 (-)
LOC110502188 LOC106582504 coding upstream 440992 48505445 ~ 48645921 (-)
LOC118943644 NA coding upstream 897759 48962212 ~ 48964633 (-)
LOC118943599 NA coding upstream 1405649 49470102 ~ 49480960 (-)
prkag3b LOC106592041 coding upstream 2058435 50122888 ~ 50243945 (-)
G1817541 NA non-coding downstream 23189 48031393 ~ 48034662 (-)
G1817540 NA non-coding downstream 27030 48030015 ~ 48030821 (-)
G1817526 bin1 non-coding downstream 47205 47988167 ~ 48010646 (-)
G1817479 NA non-coding downstream 135678 47921536 ~ 47922173 (-)
G1817460 NA non-coding downstream 180014 47870020 ~ 47877837 (-)
G1817549 NA non-coding upstream 10712 48075165 ~ 48076165 (-)
G1817593 NA non-coding upstream 64989 48129442 ~ 48130249 (-)
G1817545 NA non-coding upstream 71954 48136407 ~ 48137488 (-)
G1817597 NA non-coding upstream 88605 48153058 ~ 48153868 (-)
G1817601 NA non-coding upstream 105230 48169683 ~ 48169915 (-)
G1817287 LOC106582526 other downstream 584467 47471294 ~ 47473384 (-)
G1816929 NA other downstream 655804 47400985 ~ 47402047 (-)
G1816841 NA other downstream 831205 47225551 ~ 47226646 (-)
G1815615 LOC106582489 other downstream 2216869 45838750 ~ 45840982 (-)
G1814480 NA other downstream 3383963 44673447 ~ 44673888 (-)
G1817668 NA other upstream 204334 48268787 ~ 48291496 (-)
G1817836 NA other upstream 394573 48459026 ~ 48460040 (-)
G1817968 NA other upstream 405145 48469598 ~ 48470035 (-)
G1818059 NA other upstream 562911 48627364 ~ 48627846 (-)
G1818393 NA other upstream 1061061 49125514 ~ 49126117 (-)

Expression


Co-expression Network