LOC110502188 (LOC106582504)


Basic Information

Item Value
gene id LOC110502188
gene name LOC106582504
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 48505445 ~ 48645921 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580043.2
GCAGTGGCTGACTCAGTGGAtctagagatagacagagagagtgtgagagagagaaagagagagagagacagacagacacacagggagagaaacagagagccctTTCCTCGACCAGTGGCTCTCTTTCATTGGCTCGGTGCACTGGACCGGCAAACAggaaacactacaacaccatgccTGTTTCTGTCGCTACATCAAGTCTCTACCACTACCGCTGCTACTACCTCGCATCATCTTCACTAGAACCAGCCAGCATTCAGACagaggatcagagagagagagagcgggaagcCCCCTGAAAGACAGACTCGGCGGAGTAAAGAAACAAGAGACTGTGGCTGAGGCTGGACCAGGGTTACGACGCTACAGACTGAAGTCAAGCAGCTGCTGTGTTTCTCTTCCTGCTCCCAGCTGCTGGAGCTCCATGCGAGAGGAGAAAAAGTAGAGCGGCGGAAAGAGAGAACTGCTGTTGAGAGTCTGGAAGAGCTGGAAGACGGAAAACAAAGCCCACGTAGCAACACCGCTCTGAAGTGGCTCAAGagagacatactgactgactctCAAGTGGCTCAAGagagacatactgactgactctCAAGTGGCTCAAGagagacatactgactgactctCAAGTGGCTCAAGagagacatactgactgactctCAAAGTGGCTCAAGagagacatactgactgactctCAAGTGGCTCAAGagagacatactgactgactctCAAGTGGCTCAAGAGAGacagattgactgactgactgctgctcCAGTGGATGCTCAAGACCACGTTGTGACGCTCCAAGACTCACTGACGCGAGGGTTGGCTTCTCCCAACACACCTGACTGAAGGACTGACCCTCGGGTTGTGACCAGAGCAGTGGCTCATGCTGACAACACACAGCAGGATTTAAAGGGAGTTAGTTCTCCTCGACCTTAAACCTGTAGAATTCTCTTTGACGTCTGACTATCAGCGTAGTATGGAACACTGAATGCCCCCCCCCGTTACAAGGACTTTGGTTCAGGTTCTGTAGCTCTACGACCAGGCTCTTGTAGATGTAAGACTTCATTGTTTTTGCTTCTCTTGATTCTGACTGTTTGTCTGTGCGCTCAGTGGAAGACCCCCCCCTCCAGCTCGTGCCTCATGGCTTGCTACTACATTGTCATCAGTTCTACTCACCTCAGCAACGGCCACTTCAGGAACATCAAGGGAGTTTTCCGCGGACCCCTCAGCAAAAATGGCAACAAGAACTTGGACTACGCGGAGAAGGAGAGGACGACGACCATGGCCAAGGCCTTGGAGGACCTGAAGGCCAACTTCTACTGTGATCTGTGTGACAAGCAGTACTACAAGCATCAGGAGTTTGACAACCACATTAACTCTTATGACCATGCTCACAAACAGAGGCTGAAGGAGCTGAAGCAGAGAGAGTTTGCCCGGAACGTGGCCTCTAAGACCAGGAAGGATGCGCGGAAACAGGAGAGAGCACTCCGGAGGATACATGAGCTTGCCGAACAACGCAGAGAGGTCCATTGCGCTCCAGGCAGTGGCCCCAAGTTCAAGTCCACTACGGTGGCAGTGGAGGGCAGTTTCAGAGACAGCTGTACCAATGGACCTTCAGAGGAGTCCAACAACTCCACAGTTCAGGAGACAGGAACCCACAACCACACCAGCACCGGCACTGGCCTGGCCACCAACAGCAAGACCCAGAAAACACTATACTGGCCTTACACGGGAAAGGCCAAGAAACAGACTTACAACAGGCACAAAATAGCATTCTCATTCTCCTTCCCAAAGAAAGCATCCATGAAGCTGAAATCTTCGGCCGCCGTATTCtgtgacaacacagaggagggtTCCAAAGAATGCGTCAGAAGACAGAAGCTCAGAATGCCCCTTGTTGAGTTGAACATTCTGGACTCTCCTACTGCAGAGGAAAAGGGACTGGGTCATGGGACTGTGGAGGCTATTGACACTCAGCCTGGTGATCTCAGCCCAAACAGTGTTCATTTTAGTGAGTGGAGCCAGAGGTCATCAGATGCACTAGCCAGGTCTGACATCCCGATGCCACCACAGTGCTCGCATTTGTGTTCTGTGTTAGTTAACTCTGAGGATATGGCCAGACCTTATGTGTCCTCCGTCTCCCAATTACCTGCATTCCCAGGCAACCCAGACACAGTACTAGATAGACCGAACTCTGAGGAAACACAGAGAAACAGCACAACAGAGGCCGAGCCGGAAACAAGCAAACTCCAGCAAGATCATAAAATAGAGGAGAGTGTCTGTGGGGAAGAGGACTCCTCCATTAGCAGTTTCTCTTCTGAGGTCGTCTCCGGTTCTGATGGTCTCCCTGAGAACGGCTCCTCCTCTCAATCCTCTCAGTGTCCTGGGACTgtgagagaggaacagaaaggaGAAGACATTACGGTGGTGGTGAAGACCCTGTCTTTCACCAAGCCCAGCCAGCCCTTCTTCTCTGTGCTCAGCAGAGATGGAaacactgttctccagtggcCTACAGAGATGTTGACCTTCACCAGGACAGAGCCCTGTCTCTCCTACAGCTGCAACCCCCTCCATTTTGACTTTAGGGCCTCACAGCAATGGCAGAGCAGGGCGAAGGTTAGTGTTGGTGACAGTCAGAGTAATTTATCTGTGGCTTTGTGTATCAGCTCAACCTCTGTCTGCGCTGAGGAACCAACAGATGTTGACAACAAGCACAACAACAAGGCCTGCTCTGGCCCAAACCATCAGAGCCCTATCAGAGACGGCAGGGAGGCAGTGGAGAGGAAGGATTGTCTCATATGTGAGCACCACACGagtgacacagacacagaaagtTACAGCTTGCGACTTAAGAGACACGGCAGTGGTGGATATAGTAGGCACTCAAAAGGTAGGACTCAATCTGAGAAAAGAGCAGCAGGTGGCGAGAAATGGAAATCCAGAGACAGGCGCCATTATAGGAGCCacaagaagaaggggaggaggaggaggaggaggggggggatgagaggaggcagtgaggaagaagaggagcaccacagagagagggagacagacggagGGTTGGAGAGCAATACAGAGAAAAGCAACAAATTTCAGAGACGGTCTGAGTGTTGGGAAGGACTTGATAGCCAATTTAGAGTCCCCACTTCACAGCAAGTGCAGCCATTAGAGAAGTCAAAGCAATCGGCTGAGGACAGCGGCTGCGCTGCTCCCTTTGCCGCGGAGgacagggagacggagagagagagggagagggagagagagagggagagggagagagagacggagagagagagggagagggagacggagagagagagagagagggagagagagagggagagggagagggagaggaagtgtgtggtGGAGAGGGAGCGGGTtgtggagaggaaggaagagagaagaagacaggaaacagcagGCAGAGTAAACGGCTCAGCGGGCAGCCTCAGCCTCTCGGATGAAAAGGTGTTTGGGAAGAGCGTCAGGAGAGACCCAGTCCATCCATCAACAGAACAGAGAAACACTGCAGGGCATGGCTCAAAGAGCTCCCAGAGTCACAACGACACCCCTTGCCCTGAGAAACCTCCTGGGGTTGTTAGACAAAACCCAAGCAGAGTGATGACAGTCACGGCACCAGAGAGCTTAGTCACCGTTACCCAAAAACTAAGAATGGCCCTTTCACCCGAGAGGCTTGGTGAAGACTTGTGTGAGAGCAGGGCCCTGAAACGGAAAAGGACAGCATCAATGTCTCTGGCTGATAAGGAGCAGGGCCTTGACCTCCAGGGTCCATGCACTCAGTGTCAGCCAGCTGTAATGGTAGAGCCCAGCGGGCCAGTCCTATGTACCCAGTGTCAGTCAACTGTGGAAGAGTCCAATTGGCCAGATGGTTCAATGGGTGAGGAGGGGTCTGCTTGGTCTTGCTGTGTTTCTTgtggtggggaggggagacagaggaagagacagagagggtccAGTTATAATCCTCACATCTCAGACCCTCCTGTAGGTCACAATGTTCTCATCTCAGACCCTCCTGTAGGTCACAATGTTCTCATCTCAGACTCTCCTGTAGGTCACAATGATCACATCTCAGACCCTCCTGTAGGTCACAATGTTCTCATCTCAGATCCTCCTGTAGGTCACAATGATCACATCTCAGACCCTCCTGTAGGTCACAATGTTCACATGGCAGAACCTCCTCTGGATGTACTGTCTGTTGACAGATGTGAGCTGAACGTCCAGAGTGAGAATCTAGTGAATACAGCTGTGGAATATCTTGAGGTTAAAGGTCAACTTGCCAGCTGTAGTGCCTTGAGTCAGCCAGCTGTAGAGCACGACAGTAAGTCAATGGGAGGCTCTCCTCGGCTCCAGATTCAGAACAATGTTCCCAGCATGAATGAAGAatgttccttctctccctctcaaactGGACCTGTAAGAGATCCCCCAAATCCCCCAGAAATAATTGGTATTACtaatgaatacaaaaacaatactgTTTGCCTCCCAAACTCTTCCACTGTTTCTCTCCCGATCATGGTACATCATATAGGAATGGGTAACTTAGGACAAGATTGTATAACAAGGAAATCGGTGGCAGTGACTGCCCAGGTCAGTCCACTGGGTGTGAGAGAGATCATCCCCCCGTCCATCCCACAGATGTTTCACAGACAGAAAACGAGTCTGGACAAGTCATGTCAGCACAGTCCCCAGAGCCACCCCACCCACCAGGAGTGCCACAGCCCCCAGCATACCCAGATTCAGAGGTTTCATCCTGGGGTTAGGGTTCAGGACGAGAGAGGGTTCATGGAGAGCCTGAGACCTGGCAGTACTAACATTACAGCTAGCCCCTACCACAATCACCGACCGCCATGTTTCCATCAGCATCACCTGTCTGACGGCATGGAGAAACACCACTGTCTCGTTCAGATCCAGACCCACAGGCACGTCCTCCACCACCATCAGCAACATCAGATGTTCCCTGGAAAGATGAAGCAAGTTCTGTCTGGATCTCCTGTCGCGGTGTCCACCTCCTGTCCTCCCATGCTCCACCCCGTCCACCTGTCTCCATCCCCCATGTCGCCCATGTCCCCCATGCCAACCAGGTCCATCACTATCCGACACACCATTCTCcatcaccaacatcaccaccGTGCAGCCTTCCTCCCTGCTCACCCCCAACCAACTCTCTTACCCCATGTTCTGCCTGTCCCAGTCAGCAGCCTGCCTATTGGGGCAGAAATGTGTCCCTCTGGCCCCTACCCACCTCCCTTTGTGACCTCACCACCGCAACTCTCGGTAATGGCCCCGCCCAGTTTACACCACCACCCAATGGCGGTGACATTCCACGCCATGCCCCGTCCAGCCATGTTCCCCTCCATGCTGCAGGCACACCCACATCCCACTGTCATCCCTCTACAGTCCatgttttaatgacatcacatccCACTGTCATCCCTCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGTCTACAGCCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGTCCATGTTTTGATGATATCACATCCCACTGTCATCCGGGCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGTCCATGTTTTGATGACATCGCATCCCACTGTCATCCCTCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGTCCATGTTTTGATGATATCACATCCCACTGTCATCTGGGCTACAGTCCatgttttaatgacatcacatccCACTGTCATCCCTCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGTCTACAGCCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGCTATAGTCCATGTTTTGATGACATCGCATCCCACTGTCATCCCTCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGCCCATGTTTTGATGACATCACATCTCACTGTCATCCGGGCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGTCTACAGCCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGTCTACAGCCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGATACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGTCTACAGCCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGATACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGTCTACAGCCCATGTTTTGATGACATCACATCCCACTGTCATCTGGGCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGTCTACAGCCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGGCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGGCTACAGTCCATGTTTTGATGACATCACATCCTACTGTCATCCGGGCTACAGCCCATGTTTTGATGACATCACATCCCACTGTCATCCCTCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGCCCACGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGCCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGTCCACGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGTCCACGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGCCCACGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGCCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGTCCATGTTTTGATGACATCACATCCCACTGTCATCCGGGCTACAGTCCATGTTTTGATGACATCACATCCCACTTTCATCTCATTGCTGGACATGTTTTGATGACGTCATCATCTAACATGCCACTGCAGGAAGTATAGCTTTCAATcttcttttttgttgttttacTTACAACTATTATTTCAAATGGGGGCGAaagcaacaacaaacaaacaaaaagttaCTGTCAATTTCATCTCGTACTTAAAGTAGTCTTTTCTTCACGTAACATCCCGAAACCTGCTTTAACAATGGAAAGGCTTCTGtggtagcctattcagagtgatAAGTGATTTTCATTTCATACAATATTATCCAGAAATATTTCCTTTGGAGTGACAATCAAGCATAACTACAGAATTAGAACGTGTGCAATACTAAAAAACCAGTCTGAAGCAGATTAATTATTAGAGTGTCCTCTAGACTGTATTTTTTTTGCTAGTGAAGTGCTTCAATAGTCTACCTTTATGGGCATTGCATGCAATACTAGTTTAATGAAACATGAACAGAAGCACAGTCCGTTTTTCTAGTGCAAACGGTACGGTGTGGAAGAGTTTCACTCTACGTTCATTTTGTTTCCTAAAGTATGACAATTCATTCACAAAACACTCTATTGTACAGCATTCCCTCCGTAGTTTCagacacagccccccccccccccccaaaaaaaaaaataatatatatatttggcAAATAAAGTATGCATTGAAAGAATGGGTCTGAGCTGTGGCTGTCCTTATATGGACACGGTATGGCTACATATGTTATGAGTTAGATTTTATACATTAGATTTATTTTAAAAAGTGTCAGTGTCTTTGTAATCACATAGCCCTGATTGATTCTGTACCTAAATCTGCTTACCAAGTGGTCGCAAATGCTTCCCCATAGGCCTTCTCCATGTAATTGTAATACAGTAGATGATGAAAACTGTTCTACCGTTCTGCAACTAATTCAACTtgatttataaaaacaaaaacaaaaaaaattgtaCATTGTTGTAAATTAGCCATATTTATAATTCACTTGCAGGCTTTATTGTAAGATATAATTCTGATTTTATAGTGCAAGTTACCCCTTTATGTATTATCGTCATTATTTAGATACAACTATGTTTTTACTTACGTTTTGTCAACAGAATGATGTTgaggtaaaaataaatacaatgtaaaaaatgtaattaaaataaaaaaatattcctcTTT
>TU2080109
CCGCATTACATTATGGAGCCCTTTGCCtagctgtgactgtgtgtgattCCTCCATTCACCCCCTCCCTTAATTCAGATCGGTGTACTTGATGCTGCTCACTTCAGTGCTGAGGCCCAGGGCTAGAGTAGAGAGCCCCAGCAGAGAAAGAAAGTGAATTACAATAtagaacgctgtctgtctgtcacacacagGAGATGCCCTGCTCCCTGATTCAACTAACacagacagagaaggagtagCTTTGTTTCTCAGTTAGACCTGGGAGGCTATGGACTGAAGTCTCTACTGCTACATCAGATAGACCTGGGAGGCTATGGACTGAAGTCTCTACTGCTACATCAGATACATCTACCCCCCCCAGTAACAAAAcatctgtcgtaaccggccgcgaccgggaggtccgtggggcgacgtacCACTGGCATAGCGTCGTCCAggttggggagggtttggccggtagggaaatccttgtctcatcgcgcaccagcgactcctgtggcgggccgggcgcagggcgcgctaaccaaggtcgccaggtgcatggtgttggggagaaaaagggagaaaaaataaataaaaaaaATCTAACATGCCACTGCAGGAAGTATAGCTTTCAATcttcttttttgttgttttacTTACAACTATTATTTCAAATGGGGGCGAaagcaacaacaaacaaacaaaaagttaCTGTCAATTTCATCTCGTACTTAAAGTAGTCTTTTCTTCACGTAACATCCCGAAACCTGCTTTAACAATGGAAAGGCTTCTGtggtagcctattcagagtgatAAGTGATTTTCATTTCATACAATATTATCCAGAAATATTTCCTTTGGAGTGACAATCAAGCATAACTACAGAATTAGAACGTGTGCAATACTAAAAAACCAGTCTGAAGCAGATTAATTATTAGAGTGTCCTCTAGACTGTATTTTTTTTGCTAGTGAAGTGCTTCAATAGTCTACCTTTATGGGCATTGCATGCAATACTAGTTTAATGAAACATGAACAGAAGCACAGTCCGTTTTTCTAGTGCAAACGGTACGGTGTGGAAGAGTTTCACTCTACGTTCATTTTGTTTCCTAAAGTATGACAATTCATTCACAAAACACTCTATTGTACAGCATTCCCTCCGTAGTTTCagacacagccccccccccccccccaaaaaaaaaaataatatatatatttggcAAATAAAGTATGCATTGAAAGAATGGGTCTGAGCTGTGGCTGTCCTTATATGGACACGGTATGGCTACATATGTTATGAGTTAGATTTTATACATTAGATTTATTTTAAAAAGTGTCAGTGTCTTTGTAATCACATAGCCCTGATTGATTCTGTACCTAAATCTGCTTACCAAGTGGTCGCAAATGCTTCCCCATAGGCCTTCTCCATGTAATTGTAATACAGTAGATGATGAAAACTGTTCTACCGTTCTGCAACTAATTCAACTtgatttataaaaacaaaaacaaaaaaaattgtaCATTGTTGTAAATTAGCCATATTTATAATTCACTTGCAGGCTTTATTGTAAGATATAATTCTGATTTTATAGTGCAAGTTACCCCTTTATGTATTATCGTCATTATTTAGATACAACTATGTTTTTACTTACGTTTTGTCAACAGAATGATGTTgaggtaaaaataaatacaatgtaaaaaatgtaattaaaataaaaaaatattcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580043.2 False 8333 mRNA 0.49 4 48505445 48645921
TU2080109 True 1707 lncRNA 0.40 2 48505450 48543729

Neighbor

gene id symbol gene type direction distance location
LOC110501956 itgav coding downstream 285403 48139761 ~ 48220042 (-)
LOC110501953 ihh coding downstream 440992 48057851 ~ 48064453 (-)
tmem198a LOC106582514 coding downstream 533314 47897057 ~ 47972131 (-)
ptprna LOC106582506 coding downstream 671191 47733219 ~ 47834254 (-)
LOC110501961 LOC106582505 coding downstream 869805 47628880 ~ 47635640 (-)
LOC118943644 NA coding upstream 316291 48962212 ~ 48964633 (-)
LOC118943599 NA coding upstream 824181 49470102 ~ 49480960 (-)
prkag3b LOC106592041 coding upstream 1476967 50122888 ~ 50243945 (-)
si:ch211-67e16.4 LOC106582542 coding upstream 1814173 50460094 ~ 50465680 (-)
si:ch211-67e16.3 LOC106582540 coding upstream 1825826 50471747 ~ 50484670 (-)
G1817839 NA non-coding downstream 44180 48460986 ~ 48461265 (-)
G1817830 NA non-coding downstream 50014 48455230 ~ 48455431 (-)
G1817813 NA non-coding downstream 65185 48440023 ~ 48440260 (-)
G1817786 NA non-coding downstream 85518 48419727 ~ 48419927 (-)
G1817773 NA non-coding downstream 94779 48410385 ~ 48410666 (-)
G1818074 NA non-coding upstream 9402 48655323 ~ 48655607 (-)
G1818076 NA non-coding upstream 11865 48657786 ~ 48658031 (-)
G1818084 NA non-coding upstream 30587 48676508 ~ 48676734 (-)
G1818085 NA non-coding upstream 33997 48679918 ~ 48680166 (-)
G1818106 NA non-coding upstream 99577 48745498 ~ 48745793 (-)
G1817968 NA other downstream 35410 48469598 ~ 48470035 (-)
G1817836 NA other downstream 45405 48459026 ~ 48460040 (-)
G1817668 NA other downstream 213949 48268787 ~ 48291496 (-)
G1817287 LOC106582526 other downstream 1032061 47471294 ~ 47473384 (-)
G1818393 NA other upstream 479593 49125514 ~ 49126117 (-)
G1818417 NA other upstream 519830 49165751 ~ 49166367 (-)
G1818802 NA other upstream 1071711 49717632 ~ 49719378 (-)
G1819189 NA other upstream 1563553 50137937 ~ 50219233 (-)
G1819250 NA other upstream 1655880 50301801 ~ 50305038 (-)
G1818030 NA non-coding upstream 38833 48582562 ~ 48582970 (-)
G1818033 NA non-coding upstream 43971 48587700 ~ 48589106 (-)
G1818034 NA non-coding upstream 47682 48591411 ~ 48592271 (-)
G1818059 NA other upstream 83635 48627364 ~ 48627846 (-)

Expression


Co-expression Network