XLOC_037008 (tmem237a)


Basic Information

Item Value
gene id XLOC_037008
gene name tmem237a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 13714379 ~ 13728937 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072852
CGGCACAGCCAAGCCAAGACTTTCGTCCTCTCACACCAACACCGCCAGAGACTCCAGCAGCCAGAGAAGAATGACAGCAAAACAAACGTTCCGTTTTTCATGTGTGTGACATCAAGAGCAGACAAAATGCCAAGCGTCAAACCCAAGAAAaagaagatcaagaaggagaTCAATGAAGTTGAGGAGCCAGAAgCAGGGCCTGAGCCAGCTATAGAAATGGAGGGTCTGGAGAGCCGCAGACAGTCTGAAAGCAGAGAGCCGCTGACCCCTGAGCCTCACGACAATCCACcactgaagaagaagaagaaaaagaagacacATACTTTTGaaaatgagGGTGAACAGCAAGACCACCCCAATGGAGATGTTCAAGAGTCCCCTACAGATGGTGAAGAAGTCACCAAAAAAAGCAAGAAGAAAAGGAAGAATAAGATGATGGAAAACCAGTCTCACAATGAGCTCGGTGTGGAGGAAGATGACATCATCACAGATGTGCATGCACCGATATCTCAGCGCTCTCTGTTCTCTGCCCCTCTGAGTCACAGTCATCCTATTGGAAAAGTGTTTGTGGAAAAGAACCGCCGCTTCCAAGCAACTGATTTATCCCATGACCATCTGGAGGAGTACATGGAGGTCAGACCTATGTGGAACACACGAGATGTGGCCATGAGGGTTCACAGCGGCTTCAGGATCATTGGACTCTTCTCTCATGGATTTCTGGCTGGATATGCGGTGTGGAATATTATTGTGGTGTATGTGTTGGCTGGAGAGCAGATGACCACACTACCCAACCTTCTCCAGCAGTACCACAGTCTGGCTTATCCAGCACAGTCTCTGCTCTACCTCCTGCTGGCCATCAGCACTGTGTCAGCCTTCGACAGGGTAAATCTGGCTAAAGCCTCCATGGCTCTTCGAGGATTTCTCACTCTTGATCCAGCCGCTCTTGCTTCTTTCTTATACTTTGCTGCACTAATCCTGTCTCTAAGCCAACAGATGACCAGTGATCGTATACATCTCTACCCCACAGCCAATGAAACACTTTGGCCTCCAGGTTTAGAACATCAGATTCTGCAGCCCTGGATCGTGGTGAACCTGGTCGTGGCTCTGCTGGTTGGTTTGGCCTGGGTGTTTGTCGCTACACGGCCAGACATGGACTACACTGAAGAGTTTTTAATGGCGATGGAGGTGGAGGAATATCCACGTCATGATGACAAACATGAGCTGGCAGCCTGAGAGACTGCTGCAAGATTTATTAGCGGTCAGAAATTAACATTAAACTTTGTTTTGTGCTAAATGTTGTAAGGTAAACCTTTtgtatattactttattattgaGCTTGTTATATAGGTAAAGattgtgtaaaaatatattaataaacgtTTTTGTTAAGTTGGctga
>TCONS_00072853
ACACCAACACCGCCAGAGACTCCAGCAGCCAGAGAAGAATGACAGCAAAACAAACGTAAAGAGCTGCAGTATATCCAGCATGAGGCTAGTTTAAAGCAACATGCACACTGAATGCTCACACAATACCTACACCCTTCAGTTGAAACAGACAAAATGCCAAGCGTCAAACCCAAGAAAaagaagatcaagaaggagaTCAATGAAGTTGAGGAGCCAGAAgCAGGGCCTGAGCCAGCTATAGAAATGGAGGGTCTGGAGAGCCGCAGACAGTCTGAAAGCAGAGAGCCGCTGACCCCTGAGCCTCACGACAATCCACcactgaagaagaagaagaaaaagaagacacATACTTTTGaaaatgagGGTGAACAGCAAGACCACCCCAATGGAGATGTTCAAGAGTCCCCTACAGATGGTGAAGAAGTCACCAAAAAAAGCAAGAAGAAAAGGAAGAATAAGATGATGGAAAACCAGTCTCACAATGAGCTCGGTGTGGAGGAAGATGACATCATCACAGATGTGCATGCACCGATATCTCAGCGCTCTCTGTTCTCTGCCCCTCTGAGTCACAGTCATCCTATTGGAAAAGTGTTTGTGGAAAAGAACCGCCGCTTCCAAGCAACTGATTTATCCCATGACCATCTGGAGGAGTACATGGAGGTCAGACCTATGTGGAACACACGAGATGTGGCCATGAGGGTTCACAGCGGCTTCAGGATCATTGGACTCTTCTCTCATGGATTTCTGGCTGGATATGCGGTGTGGAATATTATTGTGGTGTATGTGTTGGCTGGAGAGCAGATGACCACACTACCCAACCTTCTCCAGCAGTACCACAGTCTGGCTTATCCAGCACAGTCTCTGCTCTACCT
>TCONS_00072854
ACACCAACACCGCCAGAGACTCCAGCAGCCAGAGAAGAATGACAGCAAAACAAACGTTCCGTTTTTCATGTGTGTGACATCAAGAGCAGACAAAATGCCAAGCGTCAAACCCAAGAAAaagaagatcaagaaggagaTCAATGAAGTTGAGGAGCCAGAAgCAGGGCCTGAGCCAGCTATAGAAATGGAGGGTCTGGAGAGCCGCAGACAGTCTGAAAGCAGAGAGCCGCTGACCCCTGAGCCTCACGACAATCCACcactgaagaagaagaagaaaaagaagacacATACTTTTGaaaatgagGGTGAACAGCAAGACCACCCCAATGGAGATGTTCAAGAGTCCCCTACAGATGGTGAAGAAGTCACCAAAAAAAGCAAGAAGAAAAGGAAGAATAAGATGATGGAAAACCAGTCTCACAATGAGCTCGGTGTGGAGGAAGATGACATCATCACAGATGTGCATGCACCGATATCTCAGCGCTCTCTGTTCTCTGCCCCTCTGAGTCACAGTCATCCTATTGGAAAAGTGTTTGTGGAAAAGAACCGCCGCTTCCAAGCAACTGATTTATCCCATGACCATCTGGAGGAGTACATGGAGGTCAGACCTATGTGGAACACACGAGATGTGGCCATGAGGGTTCACAGCGGCTTCAGGATCATTGGACTCTTCTCTCATGGATTTCTGGCTGGATATGCGGTGTGGAATATTATTGTGGTGTATGTGTTGGCTGGAGAGCAGATGACCACACTACCCAACCTTCTCCAGCAGTACCACAGTCTGGCTTATCCAGCACAGTCTCTGCTCTACCTCCTGCTGGCCATCAGCACTGTGTCAGCCTTCGACAGTATACTTTGCTGCACTAATCCTGTCTCTAAGCCAACAGATGACCAGTGATCGTATACATCTCTACCCCACAGCCAATGAAACACTTTGGCCTCCAGGTTTAGAACATCAGATTCTGCAGCCCTGGATCGTGGTGAACCTGGTCGTGGCTCTGCTGGTTGGTTTGGCCTGGGTGTTTGTCGCTACACGGCCAGACATGGACTACACTGAAGAGTTTTTAATGGCGATGGAGGTGGAGGAATATCCACGTCATGATGACAAACATGAGCTGGCAGCCTGAGAGACTGCTGCAAGATTTATTAGCGGTCAGAAATTAACATTAAACTTTGTTTTGTGCTAAATGTTGTAAGGTAAACCTTTtgtatattactttattattgaGCTTGTTATATAGGTAAAGattgtgtaaaaatatattaataaacgtTTTTGTTAAGTTGGctg

Function

symbol description
tmem237a Acts upstream of or within convergent extension involved in gastrulation. Predicted to be located in ciliary transition zone. Is expressed in nervous system; pectoral fin; pectoral fin bud; and pharyngeal arch 3-7. Human ortholog(s) of this gene implicated in Joubert syndrome and Joubert syndrome 14. Orthologous to human TMEM237 (transmembrane protein 237).

GO:

id name namespace
GO:0030111 regulation of Wnt signaling pathway biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0042995 cell projection cellular_component
GO:0035869 ciliary transition zone cellular_component
GO:0005929 cilium cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070402-3 Acts upstream of or within convergent extension involved in gastrulation. Predicted to be located in ciliary transition zone. Is expressed in nervous system; pectoral fin; pectoral fin bud; and pharyngeal arch 3-7. Human ortholog(s) of this gene implicated in Joubert syndrome and Joubert syndrome 14. Orthologous to human TMEM237 (transmembrane protein 237).

Ensembl:

ensembl_id ENSDARG00000041735

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072852 False 1398 mRNA 0.47 12 13714379 13728937
TCONS_00072853 False 872 mRNA 0.48 8 13714411 13722605
TCONS_00072854 True 1291 nonsense_mediated_decay 0.46 11 13714411 13728936

Neighbor

gene id symbol gene type direction distance location
XLOC_037007 mpp4a coding upstream 2388 13682133 ~ 13711991 (+)
XLOC_037006 als2a coding upstream 42179 13628635 ~ 13672200 (+)
XLOC_037005 NA coding upstream 242852 13469074 ~ 13471527 (+)
XLOC_037004 CR407547.1 coding upstream 265731 13448529 ~ 13448648 (+)
XLOC_037003 carf coding upstream 463052 13229585 ~ 13251327 (+)
XLOC_037009 abi2a coding downstream 4531 13733468 ~ 13799692 (+)
XLOC_037010 cd28 coding downstream 256630 13985567 ~ 13989879 (+)
XLOC_037011 cd28l coding downstream 270683 13999620 ~ 14005116 (+)
XLOC_037012 si:ch211-67e16.3 coding downstream 281886 14010823 ~ 14019390 (+)
XLOC_037013 si:ch211-67e16.4 coding downstream 294449 14023386 ~ 14041287 (+)
XLOC_036996 CR752651.1 non-coding upstream 886259 12828005 ~ 12828120 (+)
XLOC_036995 NA non-coding upstream 1245336 12461619 ~ 12469043 (+)
XLOC_036991 CR847976.1 non-coding upstream 2266470 11447777 ~ 11447909 (+)
XLOC_037014 NA non-coding downstream 383538 14112475 ~ 14117000 (+)
XLOC_037015 AL929266.1 non-coding downstream 414136 14143073 ~ 14147153 (+)
XLOC_037016 NA non-coding downstream 423231 14152168 ~ 14197503 (+)
XLOC_037018 NA non-coding downstream 1788596 15517533 ~ 15530690 (+)
XLOC_037019 NA non-coding downstream 1798674 15527611 ~ 15529457 (+)

Expression


Co-expression Network