cd28 (LOC100136275)


Basic Information

Item Value
gene id cd28
gene name LOC100136275
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 50495067 ~ 50496991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124533.1
GGAGGTGCACTTCTTCTCGTCGTCATGACTCTCAGCCTGTTGACATTTCTCTGTCTCGGTCTTTGCCTCCCAGTGTGGAATGccctgaGGGTCACCCAGCCGTACCGTGTGGTGAGTCATCGTGGTGAGGTGGAGCTGTTCTGCTCCTACCACCACACAGGGAGACATGAACCGGAGGAGCTACGGATCACTCTGTACCGGGGGATGTACGGGGAGCAGGAAGAACAGAAGGTGTGCACGTCCTCCTTCACCCACAACAACACAGCCTTccaggtggagggagagggagagaggaaggtgcGTTGTCGGGGCCAGTTAAGGCCAGGCAAGGTGAACCTGACTATCTCTGGTCTCAGGGGTAACGACACTGACCTGTACCGCTGTGCCATAGAAGTCCTGTACCCTCCGCCATACCTGAGGACGTTTGGGAATGGTACCCTACTCTATATAACAGAGGAACCAGGGTGCTTTACCCCAGAGGCCCAGAGAAGAGATGATGTAACAGGAGAAACATCCGTCAGACTACCCTTAGCAGGACTGGCCGCAGTATTAATAGTAATCTCTGCCATTGCTATCCTCCTCGTTCATCAGGTtctacagaggaagagaagattTGAAGCAATAGTACCGATGATGTCAAAGAATGATGGAAGATTTGATTATGGGAACTTCCAatgaagaatttttaaaatacATATCTATATGTTTCATTGTGTTGTAATATAAAGAAATAGTGAAATCAAGTCTACAACTAGTCTCGAATAAATTATTTGCTTTTGATCAA
>TU2082615
ATGAACACCTGAATTACTGGTTTGGTATTACTGGTATTGAAGCACGTATGTGCTTCTATGGCGTCGATCAACGCACAAATCTCGAAACTGTTTCCGAAAGACTTGGTAATATAAAAGTCTGAGAAGATGATATTTTTGGAGGTGCACTTCTTCTCGTCGTCATGACTCTCAGCCTGTTGACATTTCTCTGTCTCGGTCTTTGCCTCCCAGTGTGGAATGccctgaGGGTCACCCAGCCGTACCGTGTGGTGAGTCATCGTGGTGAGGTGGAGCTGTTCTGCTCCTACCACCACACAGGGAGACATGAACCGGAGGAGCTACGGATCACTCTGTACCGGGGGATGTACGGGGAGCAGGAAGAACAGAAGGTGTGCACGTCCTCCTTCACCCACAACAACACAGCCTTccaggtggagggagagggagagaggaaggtgcGTTGTCGGGGCCAGTTAAGGCCAGGCAAGGTGAACCTGACTATCTCTGGTCTCAGGGGTAACGACACTGACCTGTACCGCTGTGCCATAGAAGTCCTGTACCCTCCGCCATACCTGAGGACGTTTGGGAATGGTACCCTACTCTATATAACAGAGGAACCAGGGTGCTTTACCCCAGAGGCCCAGAGAAGAGATGATGTAACAGGAGAAACATCCGTCAGACTACCCTTAGCAGGACTGGCCGCAGTATTAATAGTAATCTCTGCCATTGCTATCCTCCTCGTTCATCAGGTtctacagaggaagagaagattTGAAGCAATAGTACCGATGATGTCAAAGAATGATGGAAGATTTGATTATGGGA
>TU2082616
AATTTCTGTAGAGGAACCAGGGTGCTTTACCCCAGAGGCCCAGAGAAGAGATGATGTAACAGGAGAAACATCCGTCAGACTACCCTTAGCAGGACTGGCCGCAGTATTAATAGTAATCTCTGCCATTGCTATCCTCCTCGTTCATCAGGTtctacagaggaagagaagattTGAAGCAATAGTACCGATGATGTCAAAGAATGATGGAAGATTTGATTATGGGA

Function

NR:

description
CTLA4-like protein precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124533.1 False 784 mRNA 0.48 4 50495067 50496854
TU2082615 False 804 TUCP 0.50 4 50495184 50496991
TU2082616 True 224 lncRNA 0.44 2 50495184 50495559

Neighbor

gene id symbol gene type direction distance location
si:ch211-67e16.3 LOC106582540 coding downstream 10397 50471747 ~ 50484670 (-)
si:ch211-67e16.4 LOC106582542 coding downstream 29387 50460094 ~ 50465680 (-)
prkag3b LOC106592041 coding downstream 251122 50122888 ~ 50243945 (-)
LOC118943599 NA coding downstream 1014107 49470102 ~ 49480960 (-)
LOC118943644 NA coding downstream 1530434 48962212 ~ 48964633 (-)
LOC118943619 NA coding upstream 25150 50521227 ~ 50533748 (-)
tmem237a LOC105009128 coding upstream 223843 50720697 ~ 50753131 (-)
LOC110502197 LOC106582575 coding upstream 306797 50803651 ~ 50853194 (-)
als2a NA coding upstream 375601 50872455 ~ 50960735 (-)
LOC118943621 NA coding upstream 540610 51037464 ~ 51041332 (-)
G1819866 NA non-coding downstream 57650 50436976 ~ 50437417 (-)
G1819844 NA non-coding downstream 93804 50400763 ~ 50401263 (-)
G1819843 NA non-coding downstream 94377 50398482 ~ 50400690 (-)
G1819274 NA non-coding downstream 106517 50388307 ~ 50388550 (-)
G1819893 NA non-coding upstream 2917 50499771 ~ 50503641 (-)
G1819894 NA non-coding upstream 10663 50507517 ~ 50509978 (-)
G1819911 NA non-coding upstream 73999 50570853 ~ 50572801 (-)
G1819975 NA non-coding upstream 260774 50757628 ~ 50758387 (-)
G1819250 NA other downstream 190029 50301801 ~ 50305038 (-)
G1819189 NA other downstream 281181 50137937 ~ 50219233 (-)
G1818802 NA other downstream 775689 49717632 ~ 49719378 (-)
G1818417 NA other downstream 1328700 49165751 ~ 49166367 (-)
G1820012 NA other upstream 399718 50896572 ~ 50897153 (-)
G1820053 LOC106582548 other upstream 526584 51023438 ~ 51026181 (-)
carf LOC106582551 other upstream 586135 51059254 ~ 51085922 (-)
G1820212 NA other upstream 929549 51426403 ~ 51427042 (-)
LOC110501977 LOC106562996 other upstream 1005004 51501853 ~ 51504398 (-)

Expression


Co-expression Network