LOC118943619


Basic Information

Item Value
gene id LOC118943619
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 50521227 ~ 50533748 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959493.1
GTGAATGAGAAACGGTGTGCTCTGCCGTCACTTCAGGGATGAAGATGATGGAATGTAACGTATGGATGACAGCGGTCCTTCTGTCGTTATACCTTTCAGATCATGTACTTACGGAACAACTTCCCAACTGCAAAGACAGACCACTGTACATCCAGCGTGTGTCTCTCCACAGCAGAGTGTCCATCTCCTGCCCCAACACGACAGGGGAGGATCTGAGCTTCCACCTGTCGTTGAACCAGTCCCTCGTTCACACCACAGTGCTCGAGAGGAACCAGATCCACACCAGAACCAACCAAACAGACACCTGGGCCCAGTTCTATCTAGTTGACCAAAATCGGAACCAGAACTTGATCAACCGCTATGTGTTCACGGTCAACAGCACAGGCCTGTACACCTGCATAGCGGAAAGGATGAGGTCTCCTCTGCCTTATCAAGAGGACTCTGTTCAGACTCTACTGATTGAAGAGAAGCAGTGCTTGACACACCGAGATCCACTGGCGAATCAAGATCAAGATCCTCTGGCCAACCAGAATTGTGCAGAGGTTTCTAAACCCCTCCCCCTGTGTCCATTATTGGTGGCATGTGGCTTTCTTCTCTACAGCATCATCATCACGATCATCGCCATCGTCCTCTGGAGGAAGCTGAAGAAGGAAGTGTCTGTTCAGAGTGACTACGTGAACATGAAGCCTGGAGAGAAGACGAGGCCTAAGAGAGTCCAGCATCCAGTCACAAGGAGATTCTGATTCTGGTCATTCCTATGGCTGTGtacctaatggcaccctattctctatggctCTATGGCTGTGtacctaatggcaccctattctctatggtcctatggcaccctattctctatggctctatggcaccctattctctatggtcctatg
>TU2082612
GAAGATGATGGAATGTAACGTATGGATGACAGCGGTCCTTCTGTCGTTATACCTTTCAGATCATGTACTTACGGAACAACTTCCCAACTGCAAAGAGGAAGCTGAAGAAGGAAGTGTCTGTTCAGAGTGACTACGTGAACATGAAGCCTGGAGAGAAGACGAGGCCTAAGAGAGTCCAGCATCCAGTCACAAGGAGATTCTGATTCTGGTCATTCCTATGGCTGTGtacctaatggcaccctattctctatggctCTATGGCTGTGtacctaatggcaccctattctctatggtcctatggcTGTGtacctaatggcaccctattctctatggtcCTATGGCTGTGtacCTAATGGCACGCTATTCTCTATGGCTCTAatccccccaatgcaccaacaaccaagagaatgaacccccaagaaccccccaaagcaccaacaaccaagagaatgaacccctaCCCCCAAGAAGCCCCCCAATGCACCAGCAACCAAGATAattaacccccacccccaagaacccccccccccaatgcaccaacaaccaagagaatgaaccccgaTCCCCGagaacccccccaatgcaccagCAACCAAGATAATGAACCcccc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959493.1 False 890 mRNA 0.50 4 50522004 50533748
TU2082612 True 611 lncRNA 0.50 5 50521227 50533708

Neighbor

gene id symbol gene type direction distance location
cd28 LOC100136275 coding downstream 25150 50495067 ~ 50496991 (-)
si:ch211-67e16.3 LOC106582540 coding downstream 37334 50471747 ~ 50484670 (-)
si:ch211-67e16.4 LOC106582542 coding downstream 56324 50460094 ~ 50465680 (-)
prkag3b LOC106592041 coding downstream 278059 50122888 ~ 50243945 (-)
LOC118943599 NA coding downstream 1041044 49470102 ~ 49480960 (-)
tmem237a LOC105009128 coding upstream 186949 50720697 ~ 50753131 (-)
LOC110502197 LOC106582575 coding upstream 269903 50803651 ~ 50853194 (-)
als2a NA coding upstream 338707 50872455 ~ 50960735 (-)
LOC118943621 NA coding upstream 503716 51037464 ~ 51041332 (-)
sumo-1 sumo-1 coding upstream 507970 51041718 ~ 51052960 (-)
G1819894 NA non-coding downstream 12026 50507517 ~ 50509978 (-)
G1819893 NA non-coding downstream 18363 50499771 ~ 50503641 (-)
G1819866 NA non-coding downstream 84587 50436976 ~ 50437417 (-)
G1819911 NA non-coding upstream 37105 50570853 ~ 50572801 (-)
G1819975 NA non-coding upstream 223880 50757628 ~ 50758387 (-)
G1819976 NA non-coding upstream 227476 50761224 ~ 50798171 (-)
G1819981 NA non-coding upstream 251222 50784970 ~ 50788056 (-)
G1819986 NA non-coding upstream 280737 50814485 ~ 50814841 (-)
G1819250 NA other downstream 216966 50301801 ~ 50305038 (-)
G1819189 NA other downstream 308118 50137937 ~ 50219233 (-)
G1818802 NA other downstream 802626 49717632 ~ 49719378 (-)
G1820012 NA other upstream 362824 50896572 ~ 50897153 (-)
G1820053 LOC106582548 other upstream 489690 51023438 ~ 51026181 (-)
carf LOC106582551 other upstream 549241 51059254 ~ 51085922 (-)
G1820212 NA other upstream 892655 51426403 ~ 51427042 (-)
LOC110501977 LOC106562996 other upstream 968110 51501853 ~ 51504398 (-)

Expression


Co-expression Network