LOC110502197 (LOC106582575)


Basic Information

Item Value
gene id LOC110502197
gene name LOC106582575
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 50803651 ~ 50853194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959501.1
accctggatgttcctaaccctaaccctgcatgctcctaaccctaatcctggatgctcctaaccctaaccctggatgctcctaactctaaccctggatGCTCCTATCTCTAACCCTGGATGCTCCTATCTCTAACCCTGGATGCTCCTATCTCTAACCCTGGATGCTCCTATCTCTAACCCTGgatgctcctaaccctaaccctggatgctcctaaccctaaccctggatgctcctaaccctaaccctgggtgCTCCTAACTCTAACCATGGATGCTCCTAACTCTCACCCTGGatgctcctaactctaaccctggatGCTCCTATCTCTAACCCTGGATGCTCCTATCTCTAACCATGGatgctcctaactctaaccctggatgttcctaaccctaaccctgcatgctcctaaccctaatcctggATGCTCCTATCTCTAACTCTGgatgctcctaaccctaaccctgcatgctcctaaccctaaccctggatgcTCCTAACCCAACCCTGGGTTTATTTTTAAATCTTCCGTGGCTTTGTGGGGGGTGTTTAGTTCAACCCGGATGTGTGGTGATCAGTGAGGGTGAAGATAAGAGGTTCCAGGAACAACATTCTGAGTATTGgtctgACAGAGATGCTGTCCAGTGTGGCAGAGGAGGTGAGGCTGGCTATCCACAGTGACATCAGTGGGTCTGAAGTCCTCTACAGCCTTCTCAGTGCCCCCTGGCTACAGTCCCTACTCAAGATCTACGAGTGTCTGCAGAAGTTCAGAAGGCTTCCACCCAGTCCCTACCTGCCCTATGCCTCTGGTCTGTCTCACGAGATCCTGTCCAACATCAGAGCAGTACCAGCTCCGTCCCCAGAGGCCAGACAGCTCTATAGTCTACTGAAGTCCCCCCATCTACAGGCCCTCCTCTCAGCCCATGACATGGTGGCCCAGACGGACTATGAGCCAGTTCTCCCTCCGCTCCCTGAGGACCTGCCGGAAGACGAGGAGGCCATGAGGATCGTCTGTCTGGTCAAGAACAAACAGCCTCTGGGAGCCACGATAAAGAGGGACGAGGAAACAGGAGAGATATACATAGCCCGGGTGATACACGGAGGCCTTGCAGATCGCAGTGGTCTTCTGCATCCAGGGGATCTGCTGGTGGAGGTGAATGGGAACCCTGTAGAAGGACTGGACCCAGAACAGGTCATACAGATACTGGTCCAATCTCAAGGCACTATTTTGTTCAAAGTGATTCCAAGCACACCACAATCAACTAAGACCCAACAGCCAGCCTTGctGTATGTGCGGGCCATGGCAGACTACTGCCCCCTGCAGGACCCAGCCATCCCCTGCCCTGACGCTGGCATGGTCTTCAGTAGAGGAGACCTGCTGGAGATAGTCGACCAGACAGACATCCACTGGTGGCAGGCTAGGAAGCTGCCCAGTGCCTCAGCCTGCGCTGGCCTCATCCCCTCCACCAGTCTGCTCaagagCAaacagagggagacatggtggtCACAGCCTTTCCAGGCCCATACCTGCATCAAATCCTTGAGCATAGCTGCTGATGAGGACGACGTTAAGACCAACATTGGAAACGGTGCCATAGCAGATGAAGAAGATTTTGAATCTGAGGACCTCAGAGAAGTGTATCCCGAAGAGGCTGAAGAAGGAGCACATACAATGGGTGGCATCTACATCTCGGGATTCCGGCGTAGTTTCCGTCTGTGGCGGAGGATGACCCACCGTAAGCGTCGCCAATCCTGCTACTCCTGTTCTCCCAACACCTCGGCTCTGTCCAGCCCCTATGAAGAGGTGGTCAGCTACCAGAGACGACCTGACGACCCGCACAGACTGATCATCCTCGTAGGTCCTTCTGGTGTAGGGGTGAATGAACTGAGGAAAAGACTGATCAAACTCAACCCACACACCTTCCAGGGAGCTGTGCCTCACACAACGCGACCAgccagagatggagaggggactGGAAAAGAATATAACTTTGTCACCAAAGAGCTGTTTGATTACATGGTGTGCAACCACAGGTTCCTGGAGTACGGTGAATATAAAGGCCATCTATATGGGACCAGTATTGATGCTGTCAAAGACGTGATAGACAGTGGAAGGATGTGTGTTATTGACACTGAGCCACATAGCATCCTGTCCGTGAGGAATAAGAAATTCAAGCCTTATGTCATCTTTATAAAGCCTCCCAGTTCAGAACGACTGAGACAGACACGGAGGGATGCACGCATCATCACCAGCTGTGTTGTCAACAGACCTTTTAAAGATGTTGACTTTGAGGAGATGGAGGATTCTGCCAGGTTCATGGAGAGGAAGTACGGTCAGTACTTCGACCGCGTCATAGTCAACGAGGAGCTGCAGGATGCCTGTATGAAGCTGTTCAATACCATACAGCTGGCTCAGGAGGGACCACATTGGATACCTGCCGCATGGCTCAGTACTGAGGactagagaaaggagagggagggcaggagaggaggggagagcaggg
>XM_036959500.1
CTGGCTCCGAGATTAacgggggatagagagggattaCAGTCTGCCTTCCCCAGGAACGCTTTGTTGTAAAATCACAGACATGTTGTCACCGGGACTGTGTACTTTGTTCTGAAACATGACCTAAAATATAAGGTGATCGtcactggagagacctgtttcactggagagacctgtttcactggagagacctgtttcactggagagacctgtttcACGAGGTCAGGGGTGAAGGAAGTGTCTGAGAAGgtctgACAGAGATGCTGTCCAGTGTGGCAGAGGAGGTGAGGCTGGCTATCCACAGTGACATCAGTGGGTCTGAAGTCCTCTACAGCCTTCTCAGTGCCCCCTGGCTACAGTCCCTACTCAAGATCTACGAGTGTCTGCAGAAGTTCAGAAGGCTTCCACCCAGTCCCTACCTGCCCTATGCCTCTGGTCTGTCTCACGAGATCCTGTCCAACATCAGAGCAGTACCAGCTCCGTCCCCAGAGGCCAGACAGCTCTATAGTCTACTGAAGTCCCCCCATCTACAGGCCCTCCTCTCAGCCCATGACATGGTGGCCCAGACGGACTATGAGCCAGTTCTCCCTCCGCTCCCTGAGGACCTGCCGGAAGACGAGGAGGCCATGAGGATCGTCTGTCTGGTCAAGAACAAACAGCCTCTGGGAGCCACGATAAAGAGGGACGAGGAAACAGGAGAGATATACATAGCCCGGGTGATACACGGAGGCCTTGCAGATCGCAGTGGTCTTCTGCATCCAGGGGATCTGCTGGTGGAGGTGAATGGGAACCCTGTAGAAGGACTGGACCCAGAACAGGTCATACAGATACTGGTCCAATCTCAAGGCACTATTTTGTTCAAAGTGATTCCAAGCACACCACAATCAACTAAGACCCAACAGCCAGCCTTGctGTATGTGCGGGCCATGGCAGACTACTGCCCCCTGCAGGACCCAGCCATCCCCTGCCCTGACGCTGGCATGGTCTTCAGTAGAGGAGACCTGCTGGAGATAGTCGACCAGACAGACATCCACTGGTGGCAGGCTAGGAAGCTGCCCAGTGCCTCAGCCTGCGCTGGCCTCATCCCCTCCACCAGTCTGCTCaagagCAaacagagggagacatggtggtCACAGCCTTTCCAGGCCCATACCTGCATCAAATCCTTGAGCATAGCTGCTGATGAGGACGACGTTAAGACCAACATTGGAAACGGTGCCATAGCAGATGAAGAAGATTTTGAATCTGAGGACCTCAGAGAAGTGTATCCCGAAGAGGCTGAAGAAGGAGCACATACAATGGGTGGCATCTACATCTCGGGATTCCGGCGTAGTTTCCGTCTGTGGCGGAGGATGACCCACCGTAAGCGTCGCCAATCCTGCTACTCCTGTTCTCCCAACACCTCGGCTCTGTCCAGCCCCTATGAAGAGGTGGTCAGCTACCAGAGACGACCTGACGACCCGCACAGACTGATCATCCTCGTAGGTCCTTCTGGTGTAGGGGTGAATGAACTGAGGAAAAGACTGATCAAACTCAACCCACACACCTTCCAGGGAGCTGTGCCTCACACAACGCGACCAgccagagatggagaggggactGGAAAAGAATATAACTTTGTCACCAAAGAGCTGTTTGATTACATGGTGTGCAACCACAGGTTCCTGGAGTACGGTGAATATAAAGGCCATCTATATGGGACCAGTATTGATGCTGTCAAAGACGTGATAGACAGTGGAAGGATGTGTGTTATTGACACTGAGCCACATAGCATCCTGTCCGTGAGGAATAAGAAATTCAAGCCTTATGTCATCTTTATAAAGCCTCCCAGTTCAGAACGACTGAGACAGACACGGAGGGATGCACGCATCATCACCAGCTGTGTTGTCAACAGACCTTTTAAAGATGTTGACTTTGAGGAGATGGAGGATTCTGCCAGGTTCATGGAGAGGAAGTACGGTCAGTACTTCGACCGCGTCATAGTCAACGAGGAGCTGCAGGATGCCTGTATGAAGCTGTTCAATACCATACAGCTGGCTCAGGAGGGACCACATTGGATACCTGCCGCATGGCTCAGTACTGAGGactagagaaaggagagggagggcaggagaggaggggagagcaggg
>XM_036959502.1
GCTGGCTCCGAGATTAacgggggatagagagggattaCAGTCTGCCTTCCCCAGGAACGCTTTGTTGTAAAATCACAGACATGTTGTCACCGGGACTGTGTACTTTGTTCTGAAACATGACCTAAAATATAAGGTGATCGtcactggagagacctgtttcactggagagacctgtttcactggagagacctgtttcactggagagacctgtttcACGAGGTCAGGGGTGAAGGAAGTGTCTGAGAAGgtctgACAGAGATGCTGTCCAGTGTGGCAGAGGAGGTGAGGCTGGCTATCCACAGTGACATCAGTGGGTCTGAAGTCCTCTACAGCCTTCTCAGTGCCCCCTGGCTACAGTCCCTACTCAAGATCTACGAGTGTCTGCAGAAGTTCAGAAGGCTTCCACCCAGTCCCTACCTGCCCTATGCCTCTGGTCTGTCTCACGAGATCCTGTCCAACATCAGAGCAGTACCAGCTCCGTCCCCAGAGGCCAGACAGCTCTATAGTCTACTGAAGTCCCCCCATCTACAGGCCCTCCTCTCAGCCCATGACATGGTGGCCCAGACGGACTATGAGCCAGTTCTCCCTCCGCTCCCTGAGGACCTGCCGGAAGACGAGGAGGCCATGAGGATCGTCTGTCTGGTCAAGAACAAACAGCCTCTGGGAGCCACGATAAAGAGGGACGAGGAAACAGGAGAGATATACATAGCCCGGGTGATACACGGAGGCCTTGCAGATCGCAGTGGTCTTCTGCATCCAGGGGATCTGCTGGTGGAGGTGAATGGGAACCCTGTAGAAGGACTGGACCCAGAACAGGTCATACAGATACTGGTCCAATCTCAAGGCACTATTTTGTTCAAAGTGATTCCAAGCACACCACAATCAACTAAGACCCAACAGCCAGCCTTGctGTATGTGCGGGCCATGGCAGACTACTGCCCCCTGCAGGACCCAGCCATCCCCTGCCCTGACGCTGGCATGGTCTTCAGTAGAGGAGACCTGCTGGAGATAGTCGACCAGACAGACATCCACTGGTGGCAGGCTAGGAAGCTGCCCAGTGCCTCAGCCTGCGCTGGCCTCATCCCCTCCACCAGTCTGCTCaagagCAaacagagggagacatggtggtCACAGCCTTTCCAGGCCCATACCTGCATCAAATCCTTGAGCATAGCTGCTGATGAGGACGACGTTAAGACCAACATTGGAAACGGTGCCATAGCAGATGAAGAAGATTTTGAATCTGTGTATCCCGAAGAGGCTGAAGAAGGAGCACATACAATGGGTGGCATCTACATCTCGGGATTCCGGCGTAGTTTCCGTCTGTGGCGGAGGATGACCCACCGTAAGCGTCGCCAATCCTGCTACTCCTGTTCTCCCAACACCTCGGCTCTGTCCAGCCCCTATGAAGAGGTGGTCAGCTACCAGAGACGACCTGACGACCCGCACAGACTGATCATCCTCGTAGGTCCTTCTGGTGTAGGGGTGAATGAACTGAGGAAAAGACTGATCAAACTCAACCCACACACCTTCCAGGGAGCTGTGCCTCACACAACGCGACCAgccagagatggagaggggactGGAAAAGAATATAACTTTGTCACCAAAGAGCTGTTTGATTACATGGTGTGCAACCACAGGTTCCTGGAGTACGGTGAATATAAAGGCCATCTATATGGGACCAGTATTGATGCTGTCAAAGACGTGATAGACAGTGGAAGGATGTGTGTTATTGACACTGAGCCACATAGCATCCTGTCCGTGAGGAATAAGAAATTCAAGCCTTATGTCATCTTTATAAAGCCTCCCAGTTCAGAACGACTGAGACAGACACGGAGGGATGCACGCATCATCACCAGCTGTGTTGTCAACAGACCTTTTAAAGATGTTGACTTTGAGGAGATGGAGGATTCTGCCAGGTTCATGGAGAGGAAGTACGGTCAGTACTTCGACCGCGTCATAGTCAACGAGGAGCTGCAGGATGCCTGTATGAAGCTGTTCAATACCATACAGCTGGCTCAGGAGGGACCACATTGGATACCTGCCGCATGGCTCAGTACTGAGGactagagaaaggagagggagggcaggagaggaggggagagcaggg

Function

NR:

description
PREDICTED: MAGUK p55 subfamily member 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959501.1 False 2505 mRNA 0.53 21 50803651 50851184
XM_036959500.1 False 2127 mRNA 0.53 21 50803651 50853193
XM_036959502.1 True 2113 mRNA 0.53 20 50803651 50853194

Neighbor

gene id symbol gene type direction distance location
tmem237a LOC105009128 coding downstream 50520 50720697 ~ 50753131 (-)
LOC118943619 NA coding downstream 269903 50521227 ~ 50533748 (-)
cd28 LOC100136275 coding downstream 306797 50495067 ~ 50496991 (-)
si:ch211-67e16.3 LOC106582540 coding downstream 318981 50471747 ~ 50484670 (-)
si:ch211-67e16.4 LOC106582542 coding downstream 337971 50460094 ~ 50465680 (-)
als2a NA coding upstream 19261 50872455 ~ 50960735 (-)
LOC118943621 NA coding upstream 184270 51037464 ~ 51041332 (-)
sumo-1 sumo-1 coding upstream 188524 51041718 ~ 51052960 (-)
LOC118943622 NA coding upstream 201770 51054964 ~ 51057512 (-)
carf LOC106582551 coding upstream 206060 51059254 ~ 51085922 (-)
G1819976 NA non-coding downstream 5480 50761224 ~ 50798171 (-)
G1819981 NA non-coding downstream 15595 50784970 ~ 50788056 (-)
G1819975 NA non-coding downstream 45264 50757628 ~ 50758387 (-)
G1819911 NA non-coding downstream 230850 50570853 ~ 50572801 (-)
G1819985 NA non-coding upstream 8227 50861421 ~ 50869881 (-)
G1820008 NA non-coding upstream 28212 50881406 ~ 50882244 (-)
G1820011 NA non-coding upstream 38085 50891279 ~ 50891640 (-)
G1820019 NA non-coding upstream 66374 50919568 ~ 50922644 (-)
G1820033 NA non-coding upstream 114210 50967404 ~ 50967865 (-)
G1819250 NA other downstream 498613 50301801 ~ 50305038 (-)
G1819189 NA other downstream 589765 50137937 ~ 50219233 (-)
G1818802 NA other downstream 1084273 49717632 ~ 49719378 (-)
G1820012 NA other upstream 43378 50896572 ~ 50897153 (-)
G1820053 LOC106582548 other upstream 170244 51023438 ~ 51026181 (-)
G1820212 NA other upstream 573209 51426403 ~ 51427042 (-)
LOC110501977 LOC106562996 other upstream 648664 51501853 ~ 51504398 (-)

Expression


Co-expression Network