sumo-1 (sumo-1)


Basic Information

Item Value
gene id sumo-1
gene name sumo-1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 51041718 ~ 51052960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124584.1
AACACGGGTTTCTACACTGCCCTGGCTAATTTCACAAAAAATAACAAGATGTCAGATACAGACACGAAACCTTCAGGTCAGGATGGAGGAGACCAAAAAGATGGAGAGTACATCAAACTGAAAGTGATCGGTCAGGACAACAGTGAAATTCACTTCAAAGTGAAAATGACGACCCATCTGAAGAAGCTGAAGGAATCTTATAGCCAGAGACAGggtgTTCATATGAGTACCTTACGGTTTCTATTTGAGGGACAAAGAATCTCAGACAACCACACTCCAAAAGAGCTGGGGATGGAAGACGAGGACGTCATCGAGGTCTATCAGGAACAGACTGGAGGACTTCGGAATAATTAGTCTTCCTGGAtttaacttttttgttgttgatgataatattgtattttatatttgtaCAATTACTGAGTGATTTGTTTTGGCTTTGTGTTCCTCTCAGTGGTAGAGATCTCTGCCAGAGAGGAGAGAATAACTGTCTGATACATCTCCTGTTCTCTTACCtggtctgtttgtgctgttttgaAAACTCGTATGAAGGCGTGACAATGACTGTAGGAgctggcaagacagcacaaacagggTCTGAATgcatttcagagtaggagtgctgatcggAGATCAGTTttgggtatttaaaaaaaaaaaaaaa

Function

NR:

description
small ubiquitin-related modifier 1 precursor

GO:

id name namespace
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12160 SUMO, SMT3; small ubiquitin-related modifier

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124584.1 True 661 mRNA 0.41 5 51041718 51052960

Neighbor

gene id symbol gene type direction distance location
LOC118943621 NA coding downstream 2100 51037464 ~ 51041332 (-)
als2a NA coding downstream 80983 50872455 ~ 50960735 (-)
LOC110502197 LOC106582575 coding downstream 188524 50803651 ~ 50853194 (-)
tmem237a LOC105009128 coding downstream 288587 50720697 ~ 50753131 (-)
LOC118943619 NA coding downstream 507970 50521227 ~ 50533748 (-)
LOC118943622 NA coding upstream 2004 51054964 ~ 51057512 (-)
carf LOC106582551 coding upstream 6294 51059254 ~ 51085922 (-)
LOC118943624 NA coding upstream 8696 51061656 ~ 51063049 (-)
fam117bb LOC107593013 coding upstream 56356 51109316 ~ 51189736 (-)
bmpr2b bmpr2 coding upstream 144643 51196922 ~ 51376938 (-)
G1820033 NA non-coding downstream 73853 50967404 ~ 50967865 (-)
G1820019 NA non-coding downstream 119074 50919568 ~ 50922644 (-)
G1820011 NA non-coding downstream 150078 50891279 ~ 50891640 (-)
G1820008 NA non-coding downstream 159474 50881406 ~ 50882244 (-)
G1820075 NA non-coding upstream 13867 51066827 ~ 51070429 (-)
G1820077 NA non-coding upstream 36854 51089814 ~ 51090146 (-)
G1820059 NA non-coding upstream 138849 51191809 ~ 51195296 (-)
G1820122 NA non-coding upstream 163471 51216431 ~ 51217195 (-)
G1820053 LOC106582548 other downstream 15537 51023438 ~ 51026181 (-)
G1820012 NA other downstream 144565 50896572 ~ 50897153 (-)
cd28 LOC100136275 other downstream 544727 50495067 ~ 50496991 (-)
si:ch211-67e16.4 LOC106582542 other downstream 577956 50460094 ~ 50465680 (-)
G1819250 NA other downstream 736680 50301801 ~ 50305038 (-)
G1820212 NA other upstream 373443 51426403 ~ 51427042 (-)
LOC110501977 LOC106562996 other upstream 448898 51501853 ~ 51504398 (-)
myo10l3 LOC106582557 other upstream 482012 51510785 ~ 51699385 (-)
G1820680 cssa21h3orf70 other upstream 906120 51959080 ~ 51959638 (-)

Expression


Co-expression Network