carf (LOC106582551)


Basic Information

Item Value
gene id carf
gene name LOC106582551
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 51059254 ~ 51085922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959506.1
ATCTATAAAATACCAGAAGTAAAATATGCCTTCCACGGTGTCCTGCCAGGATCAAAAATGTTTCATGGCGGAtgaatagaagaaaaaaaaacgcgTTTGTTGTTTGAGAACGAGGCGAGCAGAAGTCTGGGCGAAGACGAGctagttagctgtctgtctgcttgggagatggaggagcaggagagagcTATGGAAGAGGATGCTCTGGACTCAAAGCCTCCACTGACCACTGAAGAGGATGAGCCCAAACACACCGTCCTCCACGGGTCTCATATCACTGAAACACAACAGGAGCCCAGGGAACCTGCACCTGAAGAGAAGGAGACGAAGCCACAGTTCTCAGAGCTGCTTGTTATCAACAGCCTAGCTCCTCCAGACAGCTGGGAACCAGTCCACACTGATATCAAACTTGAGGAACTGACAAAGACAGAAATGCTGATACTGTCACAGACAGAGAATCAGGCAGCGATACAGACACAGACATTATCACAGACAGATGAGTTTATCATACTTGATCAGAATGGACAGCCCCTACAGTGTGAACGCATGGTGCTAGTgaccagtcagtcagacaacGGAGAGATGTATGTTATCCCCTCTAATCAGCTAGGAGGGGCTCAGGTGTTACTTCCTAGAGGACACCTACTGGACATCATAGACCCTACAGGATCCTGCGGGGAGAAGACTGCTGATGAGAAAGAGCTTCACACCATCACGTTAACAGCTGTTACGGATGACAGCGGCAGTTTGACTACAGTACCATCGGCTGTTACGGATGACAGAGGCAGTTTGACTATAGTACCATCGGCTGTTACGGATGACAGAGGCAGTTTGACTATAGTACCATCGGCTGTTACGGATGACAGCGGCAGTTTGACTATAGTACCATCGGCTGTTACGGATGACAGAGGCAGTTTGACTATAGTACCATCGGCTGTTACGGATGACAGCGGCAGCTTGACTACAGTAGCATCGACTGTTACGGATGACAGAGGCAGTTTGACTACAGTAACATCGGCTGTTACGGATGACAGCGGCAGTTTGACTACAGTAACATCGGCTGTTACGGATGACAGCGGCAGTTTGACTACAGTAACATCGGCTGTTACGGATGACAGCGGCAGTTTGACTACAGTACCATCGACTGTTACGGATGACAGCGGCAGCTTGACTACAGTAACATCGGCTGTTACGGATGACAGCGGCAGTTTGACTACAGTAGCTGCGGCTAAGAGCTCGGCACAGAGCTCTCAGGTCTGTTTCACCTCTCTGAAACCTCTCCCAGCCAACGCCCCCAACTGGGCCCTGAGGCTTCATAATGCTGAGAAGATAGGTGACTCATACCGTGGCTACTGTAACACCGACACAGAGCTGGAGACCATCCTCCTGCTCCACAAGCAGCAGACCAACAGTGTGTTTGGGACACGCCAGTCCCCCTCCCCTGCCAAGCCTGCCAGCCGTCTGATGTGGAAGTCCCAATACGTACCTTACGATGGCGTCCCTTTTGTCAATGCAGGCAGTAGAGCTATAGTGATGGAATGTCAGTATGGTCCAAGGAGGAAAGGCCTCCAGCCCAAGAAGACTGCAGAGCAGAACATCAGTCCGAACATTGATTACAAAGCTACATGCCCTGCCAGGATCTATATCAAGAAGGTGTGTAAGTTTCCTCAGCACCGGGTGCCTACGGATCCTAACGTAGACAAGAGGGTTGTTCGTCAGGAACAGGAGAAAGCCTTCTTCAACCTCCGGAAGACCCTGTGGGACGTGGGCGGAGTCCTGAGGTACTATATGCAGCTCCCCACCCAGAAAGCTCACCTCTATCATGACATGGAGgctctcctcctgcctcctcctccagacctcctcttcctccccatggaggaggaggtgaagcaggaggaggaggaggaggagaggggatgtgtcTGTGATGAAGGTGCGGAGGATGGTGGAACCATGCCATCTCGTCTCCACCCCAGGGTGGCAGAGAAGATCAGGGAGTTGGTGGAGCAGGGGTACCATCAGGTGTACCAGGTCCGCAAACAGCTCAGGCGGTTTGTGGAGCGGGAGATGTTTAAATCAGAGGAGGTCCCAGAGAGACATAACCTCTGCTACTTCCCAACCGTCAACGACATAAAGAACCACATCCACGAGGCCCAGAAGACCTTCCAGCAGGCTGGGGGGGTcaccactgatacaacacagTGGACTGAAGTGGACCCAATGACTGTGACTCTGACCCTCACGCCAGCCCCTGCTGAAGTCTGTTCGGGTGCCTTCCAGAGAGTAGGAGTGTTGGAGGGGACTGACACGTTCATTCCTGAGGCCGTACAGCTCTTCAGCTCTCtcacctccctgcaacctaagaTCTTTGCCCAGCTACAGGGTATCCAGCTCCAACCAGGCCTGTGTTCTTTTGACGGAGGTTTGTCTCAGTCGTCTACAGTCACTACAGACTTCCTGGAGCTGCCCAGCCCCCCACAGCCCCTCCTGGTCAGCCCCACACAGTTCCTCCAGTCCAGCCCCTCTCCGGGGGAAGCTATGACCCTAGCTGACCCCTCAGTGGTTCTGGGCATGGGTCAGGTGGTCATGGTGTCATCGTTAGGGGACGGACAGGTGGTCAGCGTGTCATCTCTAGGGGACGAGAGCGTGGGGACACACCAGATACTGTTGGAGGACGGACAGACCATCCCTTTCCAGATAGTGGCTCCTGCTAATATTGCTCTGAACAGTCCAGTTGAGGTCAAGGAGGAGATGAGGACGGAGGAGGACACTGTCAACCCTGTAGATTGACACCAGGACCTACAGGGGTTGTACTCCAGGTACCCCAGGGTTGTGCTCCAGTGGTGTATCTCATTCCTCACAGGGGTGTATTCTTGGGGTGTATCTCGTTCCTCACAGGGGTGTACTTCAGCCCTCACAGGGGTGTATCTCATTCCTCACAGGGGTGTATCTCATTCCTCACAGGGGTGTATCTCGTTCCTCACAGGGGTGTATCTCATTCCTCACAGGGGTGTATCCCATCTTTACCATATACTTACTGTAAGAGCGGTTGGTTTTACCTCAGGACGGTCATGTTTATTGATCACGTTTATTGTACAATTGACTGAAAGTGCAATTTATCCAGTGTTTTCTCCTTGTTAATGCTTTCTGATATCATCACGAGGAACTTGTTTGCTATCGCTTTAAAATCATGGAATCCAACGAATATTGTATAATTacagatttaaaaataaaaaaagacaacTAGGAGAACCCTGGATGTATTAACTTAATATCATGTGTATATATTAGTGCGTAGGAAATGTCTTTTTAATAGATTAACCCTGTTGCATAGTCTTCTGAGATGATCATGTACttcaataaatgtttattttatttgtttaaat
>TU2082908
GGCGAGCAGAAGTCTGGGCGAAGACGAGctagttagctgtctgtctgcttgggagatggaggagcaggagagagcTATGGAAGAGGATGCTCTGGACTCAAAGCCTCCACTGACCACTGAAGAGGATGAGCCCAAACACACCGTCCTCCACGGGTCTCATATCACTGAAACACAACAGGAGCCCAGGGAACCTGCACCTGAAGAGAAGGAGACGAAGCCACAGTTCTCAGAGCTGCTTGTTATCAACAGCCTAGCTCCTCCAGACAGCTGGGAACCAGTCCACACTGATATCAAACTTGAGGAACTGACAAAGACAGAAATGCTGATACTGTCACAGACAGAGAATCAGGCAGCGATACAGACACAGACATTATCACAGACAGATGAGTTTATCATACTTGATCAGAATGGACAGCCCCTACAGTGTGAACGCATGGTGCTAGTgaccagtcagtcagacaacGGAGAGATGTATGTTATCCCCTCTAATCAGCTAGGAGGGGCTCAGGTGTTACTTCCTAGAGGACACCTACTGGACATCATAGACCCTACAGGTATTATTAACCTGAACTCACCTGCTTCTACAGATaccagcaccctattccctattatagtg

Function

NR:

description
calcium-responsive transcription factor-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959506.1 False 3389 mRNA 0.51 15 51059254 51085922
TU2082908 True 616 TUCP 0.50 4 51082989 51085809

Neighbor

gene id symbol gene type direction distance location
LOC118943622 NA coding downstream 1742 51054964 ~ 51057512 (-)
sumo-1 sumo-1 coding downstream 6294 51041718 ~ 51052960 (-)
LOC118943621 NA coding downstream 19636 51037464 ~ 51041332 (-)
als2a NA coding downstream 98519 50872455 ~ 50960735 (-)
LOC110502197 LOC106582575 coding downstream 206060 50803651 ~ 50853194 (-)
fam117bb LOC107593013 coding upstream 23394 51109316 ~ 51189736 (-)
bmpr2b bmpr2 coding upstream 111681 51196922 ~ 51376938 (-)
tspearb tspear coding upstream 309959 51395881 ~ 51450125 (-)
ube2g2 ube2g2 coding upstream 382875 51468797 ~ 51501268 (-)
LOC110501977 LOC106562996 coding upstream 415931 51501853 ~ 51504398 (-)
G1820033 NA non-coding downstream 91389 50967404 ~ 50967865 (-)
G1820019 NA non-coding downstream 136610 50919568 ~ 50922644 (-)
G1820011 NA non-coding downstream 167614 50891279 ~ 50891640 (-)
G1820008 NA non-coding downstream 177010 50881406 ~ 50882244 (-)
G1820077 NA non-coding upstream 3892 51089814 ~ 51090146 (-)
G1820059 NA non-coding upstream 105887 51191809 ~ 51195296 (-)
G1820122 NA non-coding upstream 130509 51216431 ~ 51217195 (-)
G1820129 NA non-coding upstream 163975 51249897 ~ 51250315 (-)
G1820053 LOC106582548 other downstream 33073 51023438 ~ 51026181 (-)
G1820012 NA other downstream 162101 50896572 ~ 50897153 (-)
cd28 LOC100136275 other downstream 562263 50495067 ~ 50496991 (-)
si:ch211-67e16.4 LOC106582542 other downstream 595492 50460094 ~ 50465680 (-)
G1819250 NA other downstream 754216 50301801 ~ 50305038 (-)
G1820212 NA other upstream 340481 51426403 ~ 51427042 (-)
myo10l3 LOC106582557 other upstream 449050 51510785 ~ 51699385 (-)
G1820680 cssa21h3orf70 other upstream 873158 51959080 ~ 51959638 (-)
G1820825 NA other upstream 1310578 52396500 ~ 52412295 (-)
LOC118943624 NA coding downstream 19940 51061656 ~ 51063049 (-)
G1820075 NA non-coding downstream 12560 51066827 ~ 51070429 (-)

Expression


Co-expression Network