LOC110501977 (LOC106562996)


Basic Information

Item Value
gene id LOC110501977
gene name LOC106562996
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 51501853 ~ 51504398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579851.2
TGATCCCCGTGAGCCAATTAGAGTTTAAAACATTATGCGCGCTCCTGGTCGAAACGGAGAAGACTGAGAGAAGTGAAAAAGCGCAAATATTTATCTGTCTGTAAATTAGTACATCGTTGAGCAATAACTAGCTACACAATGTCTGAAGAAAAGCCAAAGGAAGGAGTGAAAACTGAAAACGATCACATCAACCTAAAGGTTGCAGGTCAAGATGGGTCAGTAGTCCAGTTCAAAATTAAAAGGCACACTCCGCTCAGCAAGCTGATGAAGGCGTACTGTGAAAGACAGGGTTTGTCAATTAGACAGATAAGGTTTAGGTTTGACGGACAGCCGATTAACGAGACTGACACACCTGCACAGCTTGAGATGGAAGACGAGGATACTATTGATGTATTTCAACAACAGACTGGCGGTTCCTCCCTCTCTGAGGCTCCTCCCTCTCTGAGGCTCCTCCCTCTCTGAGGCTCCTCCCTCTCTGAGGCTCATCTTAAAGGTGTACggacccctctcctcctctctgagaACAGATACACTTGAAGAGCAGCATCactcaaaacattttttattttcaataatcaTTTATcgttataaatatattttttgtttgatTGATCCACTTCCCCCCCAAGCCCTACATGTTGTGAGGGGAGGCAGGGATCTGTTTACAATGGGTTACATTCACATTCTCTACTCACTCGTTCAATCCCCCTTCATGCATTGGTGCAGCATGACTAAAGGGAGGTTCCACCACCGCCATACTCCTCACACCATTCCATTTAAATGCATGAGGTTGAGTGAACGAGTGCAGGGTAGTGAATTGGGACGTAGCCATGATCACAAGCTGGATGTCATGCCACCGAACCATTTCTTGTTTATATGAACTAGAACTGTTTTGAGAATATGTATTTGTTTCACACACAGGGGGTCCAACTGTCCTTCAGATCCctaatggcagcctattccctttaaagtgcactactttttgacccaAAGTCATGCacctatatagtgaataggatgccatttgggatgtacctcAATCTACCACAGGTTGAGGTAACACAAGGTCCACTGATCCTTCTGTTTCTCTAGTGACTTTAGTttagtttttatttgtattattacatTTTGCTAAATATATGGGCCAAATGATCAATGTTCTCATTTCACCCTGTATGGCCATACGATTGAATGGTGCATGGCTGTGTCTAGACCAAATGCTAAATGAACAGAAATGTCTCGGTGATATGATTGAAAAGGGTAAAGTTTTAAGGTCTATTTTTAACGTCACTTGAAGAAAGGATTCAACTTACCTTTTCAGATGGCTTTCTgtttatccccctctctccacacagACGGAAGGGGCGTAGTTGAGCTGTACTTGGTGGATTTCTCCAGAATTTTACCCATCATTACTGCATCACTGATATTTTATGTCACAATAAAAAGGAATCCACCCAGACTTCAA
>TU2083111
CCTGGTCGAAACGGAGAAGACTGAGAGAAGTGAAAAAGCGCAAATATTTATCTGTCTGTAAATTAGTACATCGTTGAGCAATAACTAGCTACACAATGTCTGAAGAAAAGCCAAAGGAAGGAGTGAAAACTGAAAACGATCACATCAACCTAAAGGTTGCAGGTCAAGATGGGTCAGTAGTCCAGTTCAAAATTAAAAGGCACACTCCGCTCAGCAAGCTGATGAAGGCGTACTGTGAAAGACAGGGTTTGTCAATTAGACAGATAAGGTTTAGGTTTGACGGACAGCCGATTAACGAGACTGACACACCTGCACAGCTTGAGATGGAAGACGAGGATACTATTGATGTATTTCAACAACAGACTGGCGGTTCCTCCCTCTCTGAGGCTCCTCCCTCTCTGAGGCTCCTCCCTCTCTGAGGCTCCTCCCTCTCTGAGGCTCATCTTAAAGGTGTACggacccctctcctcctctctgagaACAGATACACTTGAAGAGCAGCATCactcaaaacattttttattttcaataatcaTTTATcgttataaatatattttttgtttgatTGATCCACTTCCCCCCCAAGCCCTACATGTTGTGAGGGGAGGCAGGGATCTGTTTACAATGGGTTACATTCACATTCTCTACTCACTCGTTCAATCCCCCTTCATGCATTGGTGCAGCATGACTAAAGGGAGGTTCCACCACCGCCATACTCCTCACACCATTCCATTTAAATGCATGAGGTTGAGTGAACGAGTGCAGGGTAGTGAATTGGGACGTAGCCATGATCACAAGCTGGATGTCATGCCACCGAACCATTTCTTGTTTATATGAACTAGAACTGTTTTGAGAATATGTATTTGTTTCACACACAGGGGGTCCAACTGTCCTTCAGATCCctaatggcagcctattccctttaaagtgcactactttttgacccaAAGTCATGCacctatatagtgaataggatgccatttgggatgtacctcAATCTACCACAGGTTGAGGTAACACAAGGTCCACTGATCCTTCTGTTTCTCTAGTGACTTTAGTttagtttttatttgtattattacatTTTGCTAAATATATGGGCCAAATGATCAATGTTCTCATTTCACCCTGTATGGCCATACGATTGAATGGTGCATGGCTGTGTCTAGACCAAATGCTAAATGAACAGAAATGTCTCGGTGATATGATTGAAAAGGGTAAAGTTTTAAGGTCTATTTTTAACGTCACTTGAAGAAAGGATTCAACTTACCTTTTCAGATGGCTTTCTgtttatccccctctctccacacagACGGAAGGGGCGTAGTTGAGCTGTACTTGGTGGATTTCTCCAGAATTTTACCCATCATTACTGCATCACTGATATTTTATGTCACAATAAAAAGGAATCCACCCAGAC

Function

NR:

description
uncharacterized protein LOC110520676

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579851.2 False 1468 mRNA 0.43 4 51501853 51504398
TU2083111 True 1420 TUCP 0.43 4 51501858 51504355

Neighbor

gene id symbol gene type direction distance location
ube2g2 ube2g2 coding downstream 585 51468797 ~ 51501268 (-)
tspearb tspear coding downstream 55421 51395881 ~ 51450125 (-)
bmpr2b bmpr2 coding downstream 124915 51196922 ~ 51376938 (-)
fam117bb LOC107593013 coding downstream 312117 51109316 ~ 51189736 (-)
carf LOC106582551 coding downstream 415931 51059254 ~ 51085922 (-)
myo10l3 LOC106582557 coding upstream 8378 51510785 ~ 51699385 (-)
ankzf1 ankzf1 coding upstream 323875 51828273 ~ 51864161 (-)
LOC110501982 NA coding upstream 364240 51868638 ~ 51884571 (-)
tmem41aa tmem41a coding upstream 410510 51914908 ~ 51918144 (-)
smarcal1 smarcal1 coding upstream 583581 52087979 ~ 52110797 (-)
G1820234 NA non-coding downstream 5549 51492964 ~ 51496304 (-)
G1820222 NA non-coding downstream 48875 51450631 ~ 51452978 (-)
G1820204 NA non-coding downstream 92315 51409029 ~ 51409538 (-)
G1820239 NA non-coding upstream 2901 51507299 ~ 51507572 (-)
G1820248 NA non-coding upstream 19643 51524041 ~ 51524403 (-)
G1820249 NA non-coding upstream 21642 51526040 ~ 51526307 (-)
G1820250 NA non-coding upstream 22697 51527095 ~ 51527298 (-)
G1820212 NA other downstream 74811 51426403 ~ 51427042 (-)
G1820053 LOC106582548 other downstream 475672 51023438 ~ 51026181 (-)
G1820012 NA other downstream 604700 50896572 ~ 50897153 (-)
cd28 LOC100136275 other downstream 1004862 50495067 ~ 50496991 (-)
G1820680 cssa21h3orf70 other upstream 454682 51959080 ~ 51959638 (-)
G1820825 NA other upstream 892102 52396500 ~ 52412295 (-)

Expression


Co-expression Network