XLOC_037012 (si:ch211-67e16.3)


Basic Information

Item Value
gene id XLOC_037012
gene name si:ch211-67e16.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 14010823 ~ 14019390 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072866
TACTCCAGCAAAAACAAAGTGAAGATCTACACCAAGCATCACACTGTCAAACTGACGAGGATACGACAACATGCCTGACATCTTCACTCTTATTGCTCTCAGCTTTTCTCTCATGCTTCACAATGCACACTGCATCTGGGACGTGAGTGAACCTCTCAACCACACACTCAATGACGATGGATCAGTCAATGTCACATGCATGATTTTGGGAAATGAAAATTTCAGTGAATTGGACGCCaagctgaaaatgaatggcaAATATGTGTGTGAGGTTGAAGGCAAAGTTGAAACTAGTGGAAAAAGCTGTTCATGGCGTTATGAAGACAATAAATTCATGTTTAAATTGAACAATCCCAAAGACATACACAATTCTACATTTTCCTGTGAGATATCGAAAATTAAACCATTCCCTGTCGAAACAATGACAGGGCCTGAAGCTAAGCTTTTCCAAGGTTGCAGTAACGCTGTGGCAACTCTTAGTTCTCCATGCTACAACACAACTGTCCCCCTACCACCAAGGAATCAACTTGAAGACATTTATCCCTTACTGATCTTAGTTCTGATCATTGTGCTGGTGATGCTCTCTTTCTACAGCATCATTGTAACTGTGACCTACATCAGATTGAGGGACCAGAAGCTTGAGTCTGCTGACAATCTGACCTATGTGCCAATGCAGAGGAATGTAAAGCGGCATGATATTGACAACACAGAATACGTGGACATGCGTGAATTGCTGAAACGAGGAGGATCCCACAGAGATATGAACCACAACTCTCATTTAAATAACTTCTGAGCCCGTCTCAACAGTGATTTAACTGATTTAAATCAGGCTTTAACTGCTCTTTAACTGCCCTTGCTGGATTAAATACGGTTAAGCTACACTAAACAATATCTCAGGACAAAATTATTGCCTTTTTTGCCAATCAAAAGACTTTCTCAATGGCTAAATC
>TCONS_00072867
CTGACGAGGATACGACAACATGCCTGACATCTTCACTCTTATTGCTCTCAGCTTTTCTCTCATGCTTCACAATGaaataAAAGGAACTCAAATAGGCTTTaaaacaagtagaggatgagtatTATGAcagactttcatttttggCACACTGCATCTGGGACGTGAGTGAACCTCTCAACCACACACTCAATGACGATGGATCAGTCAATGTCACATGCATGATTTTGGGAAATGAAAATTTCAGTGAATTGGACGCCaagctgaaaatgaatggcaAATATGTGTGTGAGGTTGAAGGCAAAGTTGAAACTAGTGGAAAAAGCTGTTCATGGCGTTATGAAGACAATAAATTCATGTTTAAATTGAACAATCCCAAAGACATACACAATTCTACATTTTCCTGTGAGATATCGAAAATTAAACCATTCCCTGTCGAAACAATGACAGGGCCTGAAGCTAAGCTTTTCCAAGGT

Function

symbol description
si:ch211-67e16.3 Predicted to act upstream of or within regulation of T cell proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-310 Predicted to act upstream of or within regulation of T cell proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000078193

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072866 False 950 mRNA 0.41 5 14010823 14019390
TCONS_00072867 True 473 processed_transcript 0.39 3 14010874 14014330

Neighbor

gene id symbol gene type direction distance location
XLOC_037011 cd28l coding upstream 5707 13999620 ~ 14005116 (+)
XLOC_037010 cd28 coding upstream 20944 13985567 ~ 13989879 (+)
XLOC_037009 abi2a coding upstream 211131 13733468 ~ 13799692 (+)
XLOC_037008 tmem237a coding upstream 281886 13714379 ~ 13728937 (+)
XLOC_037007 mpp4a coding upstream 298832 13682133 ~ 13711991 (+)
XLOC_037013 si:ch211-67e16.4 coding downstream 3996 14023386 ~ 14041287 (+)
XLOC_037014 NA coding downstream 93085 14112475 ~ 14117000 (+)
XLOC_037015 AL929266.1 coding downstream 123683 14143073 ~ 14147153 (+)
XLOC_037016 NA coding downstream 132778 14152168 ~ 14197503 (+)
XLOC_037017 BX511082.1 coding downstream 272542 14291932 ~ 14297132 (+)
XLOC_037005 NA non-coding upstream 539296 13469074 ~ 13471527 (+)
XLOC_037004 CR407547.1 non-coding upstream 562175 13448529 ~ 13448648 (+)
XLOC_036996 CR752651.1 non-coding upstream 1182703 12828005 ~ 12828120 (+)
XLOC_036995 NA non-coding upstream 1541780 12461619 ~ 12469043 (+)
XLOC_036991 CR847976.1 non-coding upstream 2562914 11447777 ~ 11447909 (+)
XLOC_037018 NA non-coding downstream 1498143 15517533 ~ 15530690 (+)
XLOC_037019 NA non-coding downstream 1508221 15527611 ~ 15529457 (+)

Expression


Co-expression Network