Gene
RNA
| Item | Value |
|---|---|
| gene id | G1762585 |
| gene name | lmo7 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 765162 ~ 777464 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| lmo7 | Predicted to enable actinin binding activity; metal ion binding activity; and protein C-terminus binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in cell surface; cytoplasm; and nuclear envelope. |
| description |
|---|
| LIM domain only protein 7-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2019255 | True | 269 | lncRNA | 0.62 | 2 | 765162 | 777464 |
764,000
766,000
768,000
770,000
772,000
774,000
776,000
778,000
780,000
782,000
784,000
786,000
788,000
790,000
792,000
NC_048586.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| kctd12.1 | kctd12 | coding | upstream | 116872 | 646700 ~ 648290 (+) |
| fbxl3a | fbxl3 | coding | upstream | 169582 | 582486 ~ 595580 (+) |
| mycbp2 | NA | coding | upstream | 197734 | 273113 ~ 567428 (+) |
| trnat-cgu-77 | NA | coding | upstream | 597145 | 167946 ~ 168017 (+) |
| trnaa-ugc-172 | NA | coding | upstream | 597688 | 167403 ~ 167474 (+) |
| commd6 | comd6 | coding | downstream | 103669 | 881133 ~ 887974 (+) |
| tbc1d4 | tbc1d4 | coding | downstream | 124609 | 902073 ~ 1041922 (+) |
| klf12b | klf12 | coding | downstream | 467976 | 1245440 ~ 1412460 (+) |
| dachd | dach1 | coding | downstream | 826009 | 1603473 ~ 1937757 (+) |
| LOC110501252 | LOC106581638 | coding | downstream | 1715625 | 2492932 ~ 2499544 (+) |
| G1762578 | NA | non-coding | upstream | 9654 | 753772 ~ 755508 (+) |
| G1762577 | lmo7 | non-coding | upstream | 11946 | 752921 ~ 753216 (+) |
| G1762573 | NA | non-coding | upstream | 18248 | 744570 ~ 746914 (+) |
| G1762526 | NA | non-coding | upstream | 97414 | 648595 ~ 667748 (+) |
| G1762508 | cln5 | non-coding | upstream | 149279 | 615283 ~ 615883 (+) |
| G1762650 | NA | non-coding | downstream | 86476 | 863940 ~ 919969 (+) |
| G1762636 | NA | non-coding | downstream | 93862 | 871326 ~ 871954 (+) |
| G1762756 | NA | non-coding | downstream | 268851 | 1046315 ~ 1047075 (+) |
| G1762789 | NA | non-coding | downstream | 330332 | 1107796 ~ 1156721 (+) |
| G1763386 | NA | non-coding | downstream | 391414 | 1168878 ~ 1169150 (+) |
| G1762567 | NA | other | upstream | 43032 | 717522 ~ 722130 (+) |
| G1764378 | ebi2 | other | downstream | 1238645 | 2016109 ~ 2028403 (+) |
| G1764876 | NA | other | downstream | 1663609 | 2441073 ~ 2442508 (+) |
| ppp2r3b | LOC106581654 | other | downstream | 3780577 | 4501681 ~ 4562208 (+) |
| G1769230 | NA | other | downstream | 5023051 | 5800515 ~ 5825298 (+) |
