XLOC_037022 (si:dkey-14o1.20)


Basic Information

Item Value
gene id XLOC_037022
gene name si:dkey-14o1.20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 15890558 ~ 15894501 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072877
ACAGACGATGACGTCAGTGGAGCGCATATCGAAAAGTTGTTGCGGTGTGCAATACGTCGTGCTTTATGTTAAGTATTAATGTTAGTATTTTACCTACGGTCGGCTCTTTCTAAAGATGACCTCCCGGGAGAGACATGGAGCGGCATCATCTTCCACCTCATCTTGTCCCTCAGGGCAGCTTGAAGACCAAAGACAAGTCACTTTTCCAGGTAGACATAACACTGCTGAATATGAGACACTTTCAGACTCAGAACCAGAGCTGTCCAATCTACCTCCTGATTCACCCGATTTATCTCCTGCTACTGAAGAAAAG
>TCONS_00075078
CACTGCTGAATATGAGACACTTTCAGACTCAGAACCAGAGGTAagataaattgtttaaataaacctAATGAGTATTCTGTAAGATTCATGTGGAAATATGTCAAATGTTTTGTCTATTTCTAGCTGTCCAATCTACCTCCTGATTCACCCGATTTATCTCCTGCTACTGAAGAAAAGGTAATCACCTAGTTGCTTGGGTTGACATTATTCTTACttcttttaatgtgtattttacaTCATTACATGCTTTTTAATCAACAGAGGCAAAGTGTCCTGTTTGTCTGCAAAGTTTAAGTACTTTTTTCTGTAGATAAATAATAAAggtgtttttttaacattattttagctTAGCTGTTGTATTACACTCTCTAGTGCCATACAACACAAATAACAAAGAATAGAAATGGCTCCTACAATGAGTTGAAAATGTACTTGCTGACTGTAGAAattgtttttcacaatttttgtgaaattgtgtttttttttctcgttATTGTTATAGAGTTGCTGGGGAAATATTTGCCGTAAGTCTCGCGCAAGGTGGTCCAGCTCCACGATATTTACAGGAATGGTGTTACAATTACCTTCTAAGTGGAAACCTTGAAAACATCACGGTGGATAAT
>TCONS_00072878
AAAACATCACGGTGGATAATGTTAATAACATGGCAAAACAAGGAGAATATAAAGAGAGCAATTGCAATGCATGCCGCTGCTCGACGGACTCGTATGCTTCAACAGCTCTGTGAGGGTCTCCAACTTTACCGTCTAGTGGATATCATGGAGCAGAACAAAGAAGTTTGCCGTGGCCTCTTTGTTTTTGAAGGTGGCAATGATCAGGGGGACTCTCAATACATCGTATCACATCTTGACCACAAAATGAGTGAGAGCACTCTGAAGCACAGCGAAGAAATGCAAATCTTGAATAACTTCCAGGATTTTCTTATGGAACTCGAAGATGGAGATCCTGAGGATGAGGAGGCACTTTGTGTGTCAAAAGTAATGCAGTGGCTGTCTGGTCAAGCACACGTGCATTTGCTTCTTTCAGaaagacaatattttaaaaccaCTGTTCAATTTGACCATACATGCATGGAACGTATGCCAGACCACAGAATTTGCTACCCTGTGGTCAGTGCATGGACCCAGACAATAACATTTCCCACTGCACATTCAACaagtttaaatgaatttaaagaaAACATGAAAATTGCAGTGCAACAGGGAGCTTACTTTTACAGGGTGTAG
>TCONS_00072879
AGCAATTGCAATGCATGCCGCTGCTCGACGGACTCGTATGCTTCAACAGCTCTGTGAGGGTCTCCAACTTTACCGTCTAGTGGATATCATGGAGCAGAACAAAGAAGTTTGCCGTGGCCTCTTTGTTTTTGAAGGTGGCAATGATCAGGGGGACTCTCAATACATCGTATCACATCTTGACCACAAAATGAGTGAGAGCACTCTGAAGCACAGCGAAGAAATGCAAATCTTGAATAACTTCCAGGATTTTCTTATGGAACTCGAAGATGGAGATCCTGAGGATGAGGAGGCACTTTGTGTGTCAAAAGTAATGCAGTGGCTGTCTGGTCAAGCACACGTGCATTTGCTTCTTTCAGaaagacaatattttaaaaccaCTGTTCAATTTGACCATACATGCATGGAACGTATGCCAGACCACAGAATTTGCTACCCTGTGGTCAGTGCATGGACCCAGACAATAACATTTCCCACTGCACATTCAACaagtttaaatgaatttaaagaaAACATGAAAATTGCAGTGCAACAGGGAGCTTACTTTTACAGGGTGTAGAACAGATTTGTTAATACACGTTTTTGTCCTTTTGTCCTTTTAATTGGACTTGGagcttttaaaaaaagagatagACACAACTctttgtcatttgttttattttcgaaAGAGTGGCTTATAAGATTTCAAAACATTGCTATGACATTAGTTTTACATAAACATTACATGTGTATTCTTGTGAATTAAATTTCTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-46 No description available

Ensembl:

ensembl_id ENSDARG00000068713

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072877 False 313 mRNA 0.46 3 15890558 15892666
TCONS_00075078 False 623 lncRNA 0.34 1 15892490 15893112
TCONS_00072878 False 612 mRNA 0.42 4 15893093 15894307
TCONS_00072879 True 750 mRNA 0.39 3 15893241 15894501

Neighbor

gene id symbol gene type direction distance location
XLOC_037021 znfl1b coding upstream 48561 15837398 ~ 15841997 (+)
XLOC_037020 CR513782.1 coding upstream 319551 15567364 ~ 15571007 (+)
XLOC_037018 NA coding upstream 359868 15517533 ~ 15530690 (+)
XLOC_037019 NA coding upstream 361101 15527611 ~ 15529457 (+)
XLOC_037017 BX511082.1 coding upstream 1593426 14291932 ~ 14297132 (+)
XLOC_037023 NA coding downstream 7025 15901526 ~ 15906907 (+)
XLOC_037024 BX469925.2 coding downstream 12532 15907033 ~ 15907820 (+)
XLOC_037025 BX323875.1 coding downstream 87843 15982344 ~ 15985797 (+)
XLOC_037026 C9H3orf38 coding downstream 347155 16241656 ~ 16248098 (+)
XLOC_037027 epha3 coding downstream 554897 16449398 ~ 16618607 (+)
XLOC_037016 NA non-coding upstream 1693055 14152168 ~ 14197503 (+)
XLOC_037015 AL929266.1 non-coding upstream 1743405 14143073 ~ 14147153 (+)
XLOC_037028 NA non-coding downstream 881486 16775987 ~ 16776615 (+)
XLOC_037030 NA non-coding downstream 1331743 17226244 ~ 17227294 (+)

Expression


Co-expression Network