G1764970 (LOC106581638)


Basic Information

Item Value
gene id G1764970
gene name LOC106581638
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 2495411 ~ 2499543 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2021797
ATTTTTTAACGCTTGCAACACCTTTTATTATATTTGTATGCAGTAAAATTCTTATCACAATAATGAAGAAAACACCTCTTTAACTTTGAACAAAAACACATAACGAAACAACTGCCCGTGTTTAGCTCATAATTGTACATATTTATAGTAAAGAAACATTCTTTATAAATATTGTTTCATCTGTAGCAAGTAAATACCATAATTTAATTACAAACGGATAAATAAGGCAGTCGATATTTACAAAAGGAAGGAGGGTACAGAAAATCCAACGGCACAACGTTTATTTTCCTCACAATCTTCCAGATAGCATTTCACAATTCAAAACTTGCAAAGCACAAAACATCACAAGTTAAGCCCAGCAAACTAAATATACATTCACAAGCAAAATATTGTGGTCTGTTTGAGTTAAGTGTTGACTTTGGCACTCTTTCCAGTTTATAGATGTTTAGTATAGTTACAATCAATTTGCCTTAGGATCACAATATTTAACATCATAATACAACTTGAATCGTAAAATGTGCACTAAAAGTCCAGTTAGAGAAATAGCTACCATTGAAGGAACATCTATACACCACAGACTGACAAAATCTATCACAACCAATGGGAAAGAGGGCGTGTAATATTTACAAATATATTGAATACAGCTTAAACATATCACATATTTTCTTATGTTGGTAAGTGAGATTTCTTCCCTGGTGGTTTTGAATCGCTTTTTATGATTTTGAAGCGTTCATAGTAGGTTATTCGTGCTCTCCTCGGTGCACAAGTGTCCGAATCTCCTGCGCTGGTAGGGGTTCTGAGCAATGGTCTTGTATTCGCTTTTCGGTTCAGTCCTAAACATACCATTCACTGAAATTGGACGATAGGCTGCTGTGAccattgtggttgttgtggactGCGGGGGACAGATTGTTGTTGCTTTGGGTCTCGGTGTTAGGGGAGACGAGGCCGGGTGGTGTGGACGATTCATAACCAGAACTGGCTGCAGGCGATGAGTCGGACGCTGGAGGGGGGGCCGCTTCGTGGACCTCATGTGTTTTCGTAGAGAGCTGGGATGTGTGTAGGACTTGTCACACATCTTGCACAGATATGGTTTGTCTGACGTGTGAACGTGCATGTGCTTCTTTCGGTCGCTGCTGTTGGCAAACCGCCTGTCGCAGCCTTCAAACTCACACTGGAATGGTTGTGTGCGCTTGTGAATCTTCAAGTTTTCCGACCGTGCGAAGACCTTGCCACATCCAGGGAAGGGGCAGGGGAAGggtttctctcccgtgtggaCCCGAATGTGATTCACCAGTTTGTATTTTGCCTTAAACGGTTTGCTCTCGCGGGGGCACTCTTCCCAAAAGCAAATGTGGTTGCTCTGCTCCGGTCCTCCGACGTGCTCCACGGAGACGTGCGTGACCAGCTCATGCATTGTGCTGAAAGTTTTGTTGCAACTCTTCTTGGGGTTGCTTAGCTGCTCCTGGTCGATCCATTTACAGATGAGCTCCTGTTTGATGCACTGCTGCCGCATGTAGCGGAAAAAGGCACCGGGGTGGTGCTGGTGAGCTCCCATGTGCATACCCATGTTCATATTCATGCTGCTGTACTGGTTATGGAGCTGGGCGGCCGAATAAGGGTCGGTCCTTGGGCTGGAGACCTGGTGGTACTGGTCGGAACGCCCGAAAACCTCACCTGGTAGTCCAATACGCATTTGCCCGTTGAGCACATTCGGGGATCCGTGGGACCCATGCTGGTCGTGAATCCCGGGGAACAGAATGTGGCCTTGACTGTCTGTGTGGGAATGATGGAGAGACCCGGTAGTGGGGCCGAAAATAGCGTGCTGACTGCTCGCGGGAGAGGATTCTCCGAAGCCGCGGCTGCGAAAAAGAAAGTCCCTGGTGGAGTTGAATGGGGAACTCGCGTACGATGTGACATGGGCGGCGTGTGCACCCAATGCTGCTGTGGGGTAGCCGGGCGCCTGAGAGGTGAAGGCTGAGCTCTGTCCCGGAGAAAGATCATGGTTCAGTTTAAACGCACCCATGTGTGCCGAGTCGACGAAGCTATTTTGTGCTAAACTCAAGTCTCTCTCCTGCATCTCGCTCGCTGTGTGATGCCTGGCAAACGTGCCAACTCCCAGTCCGGGGAACTGGTGACCTGCGTCCAGTAACATGGTCTCTCAAAGCGAATTTCGTTCGAATCAGCTTGTGTACAAACAATTTTGGGGGGGAAAAGTACAATTCAATGTTATATTCGGTTAGGGTTATTCACAACTTCATTGCATGGAAACAACATATCAGGCAAAGTTCAAAGCGATGATCCGCTCGTAGGGGAAAAAAAACTACACAAACAGGTCTATCTATATTCACTGGTAGTTAACTTGTTACTAAAAATCCCCATGAAACGAAGAGATTCCTTTGCGTTTTTCCTCTGGAAACTGTGAATGCTGATTGCGTTTAAACACACAGGAAGAATTGAATAATTATCTTACTAGGTGTCCTCGCACGGAGAGAGTGCGGGTTGTTGCAGCATCTCGGATTGTTGTTCGGATTGGTGTGTTTATTTCTTTCGCTTGTCTGTGTTTATCGCGGAGGGTCC

Function

NR:

description
zinc finger protein ZIC 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2021797 True 2580 lncRNA 0.46 3 2495411 2499543

Neighbor

gene id symbol gene type direction distance location
zic5 zic5 coding downstream 6351 2484121 ~ 2489060 (-)
LOC110501251 NA coding downstream 28479 2442459 ~ 2466932 (-)
gpr183a ebi2 coding downstream 452641 2016068 ~ 2042770 (-)
gpr18 gpr18 coding downstream 482349 2007954 ~ 2013062 (-)
LOC118943628 NA coding downstream 963437 1525947 ~ 1531974 (-)
tmtc4 tmtc4 coding upstream 400283 2899826 ~ 2950860 (-)
nalcn nalcn coding upstream 517307 3016850 ~ 3312040 (-)
LOC118943626 NA coding upstream 688554 3188097 ~ 3190294 (-)
fgf14 fgf14 coding upstream 951832 3447431 ~ 3774567 (-)
shox shox coding upstream 1782435 4281978 ~ 4294159 (-)
G1765021 NA non-coding downstream 32055 2463137 ~ 2463356 (-)
G1765020 NA non-coding downstream 32402 2462785 ~ 2463009 (-)
G1765006 NA non-coding downstream 47143 2448017 ~ 2448268 (-)
G1765002 NA non-coding downstream 52453 2442670 ~ 2442958 (-)
G1765001 NA non-coding downstream 58035 2436794 ~ 2437376 (-)
G1765064 NA non-coding upstream 12488 2512031 ~ 2512231 (-)
G1765080 NA non-coding upstream 21375 2520918 ~ 2521118 (-)
G1765083 NA non-coding upstream 23268 2522811 ~ 2523156 (-)
G1765090 NA non-coding upstream 28796 2528339 ~ 2528557 (-)
G1765096 NA non-coding upstream 34179 2533722 ~ 2533932 (-)
klf5b LOC106586047 other downstream 1067691 1420358 ~ 1428026 (-)
G1763459 NA other downstream 1275694 1218802 ~ 1219717 (-)
G1762219 LOC106593246 other downstream 2390054 86357 ~ 105357 (-)
G1766126 NA other upstream 826178 3325721 ~ 3326343 (-)
G1769281 NA other upstream 3301218 5800761 ~ 5825307 (-)
G1769618 NA other upstream 3460607 5960150 ~ 5960815 (-)
G1771092 NA other upstream 4752241 7251784 ~ 7256717 (-)

Expression


Co-expression Network