XLOC_037031 (scel)


Basic Information

Item Value
gene id XLOC_037031
gene name scel
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 17306162 ~ 17334658 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072886
GACGGGAAGAGCAGTAAACTGTTTGTTATTCTCATCCAACTTCAATCACATCCTGCGCACACCTGAAATACCAAGCGTAAACCATGTCTTTCACCGGAAAATCAAACAGCCAATCAGGCACAACTTCAAGCACAGGATCCATTAATCCAGTGAATGAAAGCAAAAAGAAAACATCCCTGCTAAAAGACAATAGCTGGATCAAGTCAAATGTGAACGAAGACCAGAAAGTCGAACAAGAGACGAACTTTGGGAAAACTGTTCTGAGCCGTTACAAGTCCAATGAAAGCCTCACAAGcccTCAAGATAAAACTAGCAAAACTGAGACTAAAACCACTACTGTCACTACTTCACCTGGCTCTTCTGTTCAAGCTCTCAGTAAAAGATTTGGTGGGAGCCAAGACAAGCTGAatgaaaccagAACCCCATTAAATAAACCATCCGTGAAATCGCTGCCCAGGACAAGCACTACCAGCACGACAACAACAGTCAAAAATGGTACAAAGACAACTGAGACGACTGTGACCACTACCAAACAGGATGTGGTGAAATCATCTACCAAACTCGAGACAGTCAATGATAGAAACCCGGCAGATTCAAGTACCAGGAGAACAGGTGACTACAAAACAACAAGACAAGAGGACATCACTGTGAAGTCATCAAAGGACACTGTTGATGGACCGTCTTCACCTGTCAAGACCACTACAAGCATCAAAAGCTACACCAAGGAGGACGTTTTACCAGCTAAAACAACACCATATTCTGTCCAATCCACAAAGAGCTCTGAGAATCTCACACCAACATCATCAATCATGACAACTAACACAAAACCTGAAATCAGTGACTCCAAGACTGAAGTGGTTACTGTAAAGTCATCAAAGACTATCATTGATACACCAGCTTCACCTGTAAAGACCACCACAAGCATCAAGACTTATACCAAGGAGGATGTTACATCCACAAACACAAAGAGgCCAACTTCACCTGTCAAGACCACCACTAGCATCAAAACCTTCACCAAGGAGGATGTTTCACCAgctaaatcaacaacaacaacaacctacACCACAAAGAGTGACTACAAGACTGAAGTGGCTACTGTGAAGTCATCAAAGGACATCATTGATATaccAGCTTCACCTGTGAAGACCACAACAAGCATCAAAACCTACACCAAGGAGGATGTTACATCCCCTAAAACAACACCATATTCTGTGCGCTCCACAAAGAGCTCTAAGGACTTTCTGTATGATACTCCTACTAAAACGTCAATCAGtgACTACAAGACTGAAGTGGTTACTGTAAACTCATCAAAGGACATTGTTGACATACCAACTTCCCCTGTCAAGACCACCACAAGCTATAGCATCAAAAGCTACACTAAGGAGGATGTTTCGCCAACTAAAACAACATCGGATTCCATCCGATCCACAAAGAGCTCGGAGGATCTTCTGTACGATACTCTCATACCGCTGTCAATCAAATCAACTAACAGCAAACCTGACAGCAGTCGTGAGGATTTGTCATCCTCCAAAACTGTCAGAACCGTGTACTCAACAATTGACAGAAATGAGTGGAGTACAGACTTAAGTCCTTCTTACACCAGAACGTCATacacagaaagcagGCCTTTTGAATACATGTCGGATTCTCTCACATCAAAAACTACTACGACTGTATACTCATCACCGGAAAGGAAAGTAAATGCGAAGGACATCTGCACATATTGCAATCAAAGCATGTACACAGATGAAAAGTTTATCTTGGATGACATGAACATAAACTGTCATGCAAGATGTTTCAAgTGTGGGGTGTGCAATACTTCACTGGGAAACCTGAGGGCTGGGGACAGCCTGTGGGTTTACCAGTGTGCGATTCACTGTGCAAGCTGCTTTGGTGTCACTAAGAaCAAATGGATGCGCTGAAACAGTTCCCACTGAAGAAGTGAGCTAATGAAGGAGATGATGGCAAATGTGATAAAACTGCCTATACACTGATTAGACATGGACACGGGTCATTCGATTTATGGTGGTGGACTTCTATCAGATAGAGTTTGGGGTTTATTCATTGTAttaatagatatttatatacttatacaATTACCAATACTAATAGGACTATTTTAAaggaaaaataacattattttcatatattttatgaCTGTATTAAATGCAGAAACACATTTGTTTACATCTGAATGATTTTTATCAGTCAGATCTGGTTAAGCATCATTCCAGTTAGCCTGTCTCTACTGTGCAATTTGCATGTGCTTGTGCTTGATGTATTTAAGGAAGTATTTCTATTAAAGAGAACTGAACATGCTCTGATCAAGGCATCTTATGTCTTATGACAAGATTCCTATGGGGATACAAATAAAGAGCTAAAGTTAGCTTGAA
>TCONS_00072887
CGTGGGATAGACAAATGTATTATTAGAATGGAATGTATTAACCGTGATTTGTAAAATCATAGTGTTTTAGCTATTGGCACCTTGTGGATAGTCTAGTATGACACACTAAACATAATAATGTGCATTCCATTTTACAGCGTAAACCATGTCTTTCACCGGAAAATCAAACAGCCAATCAGGCACAACTTCAAGCACAGGATCCATTAATCCAGTGAATGAAAG
>TCONS_00072888
CGTAAACCATGTCTTTCACCGGAAAATCAAACAGCCAATCAGGCACAACTTCAAGCACAGGATCCATTAATCCAGTGAATGAAAGCAAAAAGAAAACATCCCTGCTAAAAGACAATAGCTGGATCAAGTCAAATGTGAACGAAGACCAGAAAGTCGAACAAGAGACGAACTTTGGGAAAACTGTTCTGAGCCGTTACAAGTCCAATGAAAGCCTCACAAGcccTCAAGATAAAACTAGCAAAACTGAGACTAAAACCACTACTGTCACTACTTCACCTGGCTCTTCTGTTCAAGCTCTCAGTAAAAGATTTGGTGGGAGCCAAGACAAGCTGAatgaaaccagAACCCCATTAAATAAACCATCCGTGAAATCGCTGCCCAGGACAAGCACTACCAGCACGACAACAACAGTCAAAAATGGTACAAAGACAACTGAGACGACTGTGACCACTACCAAACAGGATGTGGTGAAATCATCTACCAAACTCGAGACAGTCAATGATAGAAACCCGGCAGATTCAAGTACCAGGAGAACAGGTGACTACAAAACAACAAGACAAGAGGACATCACTGTGAAGTCATCAAAGGACACTGTTGATGGACCGTCTTCACCTGTCAAGACCACTACAAGCATCAAAAGCTACACCAAGGAGGACGTTTTACCAGCTAAAACAACACCATATTCTGTCCAATCCACAAAGAGCTCTGAGAATCTCACACCAACATCATCAATCATGACAACTAACACAAAACCTGAAATCAGTGACTCCAAGACTGAAGTGGTTACTGTAAAGTCATCAAAGACTATCATTGATACACCAGCTTCACCTGTAAAGACCACCACAAGCATCAAGACTTATACCAAGGAGGATGTTACATCCACAAACACAAAGAGgCCAACTTCACCTGTCAAGACCACCACTAGCATCAAAACCTTCACCAAGGAGGATGTTTCACCAgctaaatcaacaacaacaacaacctacACCACAAAGAGTGACTACAAGACTGAAGTGGCTACTGTGAAGTCATCAAAGGACATCATTGATATaccAGCTTCACCTGTGAAGACCACAACAAGCATCAAAACCTACACCAAGGAGGATGTTACATCCCCTAAAACAACACCATATTCTGTGCGCTCCACAAAGAGCTCTAAGGACTTTCTGTATGATACTCCTACTAAAACGTCAATCAGtgACTACAAGACTGAAGTGGTTACTGTAAACTCATCAAAGGACATTGTTGACATACCAACTTCCCCTGTCAAGACCACCACAAGCTATAGCATCAAAAGCTACACTAAGGAGGATGTTTCGCCAACTAAAACAACATCGGATTCCATCCGATCCACAAAGAGCTCGGAGGATCTTCTGTACGATACTCTCATACCGCTGTCAATCAAATCAACTAACAGCAAACCTGACAGCAGTCGTGAGGATTTGTCATCCTCCAAAACTGTCAGAACCGTGTACTCAACAATTGACAGAAATGAGTGGAGTACAGACTTAAGTCCTTCTTACACCAGAACGTCATacacagaaagcagGCCTTTTGAATACATGTCGGATTCTCTCACATCAAAAACTACTACGACTGTATACTCATCACCGGAAAGGAAAGTAAATGCGAAGGACATCTGCACATATTGCAATCAAAGCATGTACACAGATGAAAAGTTTATCTTGGATGACATGAACATAAACTGTCATGCAAGATGTTTCAAgTGTGGGGTGTGCAATACTTCACTGGGAAACCTGAGGGCTGGGGACAGCCTGTGGGTTTACCAGTGTGCGATTCACTGTGCAAGCTGCTTTGGTGTCACTAAGAaCAAATGGATGCGCTGAAACAGTTCCCACTGAAGAAGTGAGCTAATGAAGGAGATGATGGCAAATGTGATAAAACTGCCTATACACTGATTAGACATGGACACGGGTCATTCGATTTATGGTGGTGGACTTCTATCAGATAGAGTTTGGGGTTTATTCATTGTAttaatagatatttatatacttatacaATTACCAATACTAATAGGACTATTTTAAaggaaaaataacattattttcatatattttatgaCTGTATTAAATGCAGAAACACATTTGTTTACATCTGAATGATTTTTATCAGTCAGATCTGGTTAAGCATCATTCCAGTTAGCCTGTCTCTACTGTGCAATTTGCATGTGCTTGTGCTTGATGTATTTAAGGAAGTATTTCTATTAAAGAGAACTGAACATGCTCTGATCAAGGCATCTTATGTCTTATGACAAGATTCCTATGGGGATACAAATAAAGAGCTAAAGTTAGCTTG
>TCONS_00072889
CATCAAAAGCTACACCAAGGAGGACGTTTTACCAGCTAAAACAACACCATATTCTGTCCAATCCACAAAGAGCTCTGAGAATCTCACACCAACATCATCAATCATGACAACTAACACAAAACCTGAAATCAGTGACTCCAAGACTGAAGTGGTTACTGTAAAGTCATCAAAGACTATCATTGATACACCAGCTTCACCTGTAAAGACCACCACAAGCATCAAGACTTATACCAAGGAGGATGTTACATCCACAAACACAAAGAGgCCAACTTCACCTGTCAAGACCACCACTAGCATCAAAACCTTCACCAAGGAGGATGTTTCACCAgctaaatcaacaacaacaacaacctacACCACAAAGAGTGACTACAAGACTGAAGTGGCTACTGTGAAGTCATCAAAGGACATCATTGATATaccAGCTTCACCTGTGAAGACCACAACAAGCATCAAAACCTACACCAAGGAGGATGTTACATCCCCTAAAACAACACCATATTCTGTGCGCTCCACAAAGAGCTCTAAGGACTTTCTGTATGATACTCCTACTAAAACGTCAATCAGGTATGCGGTATCTAAATGACTCAGTCAACATTCTAAGAAACGGTATTATTTTTCATCACATTCTCAGCAGGCCACAGGATTGTGTAGTTCCGccactgaatatgtaaagcatttatttaaaaaaaaaaa
>TCONS_00072890
TTTCATGACTTTTCATTAGAGCTTCCCTCTCAGCACAGCAGTGTTTGTAATATGGATTTTTATGGTTCTTACAGTCGTGAGGATTTGTCATCCTCCAAAACTGTCAGAACCGTGTACTCAACAATTGACAGAAATGAGTGGAGTACAGACTTAAGTCCTTCTTACACCAGAACGTCATacacagaaagcagGCCTTTTGAATACATGTCGGATTCTCTCACATCAAAAACTACTACGACTGTATACTCATCACCGGAAAGGAAAGTAAATGCGAAGGACATCTGCACATATTGCAATCAAAGCATGTACACAGATGAAAAGTTTATCTTGGATGACATGAACATAAACTGTCATGCAAGATGTTTCAAgTGTGGGGTGTGCAATACTTCACTGGGAAACCTGAGGGCTGGGGACAGCCTGTGGGTTTACCAGTGTGCGATTCACTGTGCAAGCTGCTTTGGTGTCACTAAGAaCAAATGGATGCGCTGAAACAGTTCCCACTGAAGAAGTGAGCTAATGAAGGAGATGATGGCAAATGTGATAAAACTGCCTATACACTGATTAGACATGGACACGGGTCATTCGATTTATGGTGGTGGACTTCTATCAGATAGAGTTTGGGGTTTATTCATTGTAttaatagatatttatatacttatacaATTACCAATACTAATAGGACTATTTTAAaggaaaaataacattattttcatatattttatgaCTGTATTAAATGCAGAAACACATTTGTTTACATCTGAATGATTTTTATCAGTCAGATCTGGTTAAGCATCATTCCAGTTAGCCTGTCTCTACTGTGCAATT

Function

symbol description
scel Predicted to enable metal ion binding activity. Predicted to be involved in epidermis development. Predicted to be active in cytoplasm. Is expressed in corneal epithelium. Orthologous to human SCEL (sciellin).

GO:

id name namespace
GO:0008544 epidermis development biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030616-15 Predicted to enable metal ion binding activity. Predicted to be involved in epidermis development. Predicted to be active in cytoplasm. Is expressed in corneal epithelium. Orthologous to human SCEL (sciellin).

Ensembl:

ensembl_id ENSDARG00000034677

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072886 False 2393 mRNA 0.41 32 17306162 17334658
TCONS_00072887 False 222 lncRNA 0.36 2 17309058 17311681
TCONS_00072888 False 2316 mRNA 0.41 31 17309195 17334656
TCONS_00072889 False 696 processed_transcript 0.41 11 17317167 17327506
TCONS_00072890 True 825 lncRNA 0.38 6 17331502 17334523

Neighbor

gene id symbol gene type direction distance location
XLOC_037030 NA coding upstream 78868 17226244 ~ 17227294 (+)
XLOC_037029 cln5 coding upstream 446993 16854121 ~ 16859169 (+)
XLOC_037028 NA coding upstream 529547 16775987 ~ 16776615 (+)
XLOC_037027 epha3 coding upstream 687555 16449398 ~ 16618607 (+)
XLOC_037026 C9H3orf38 coding upstream 1058064 16241656 ~ 16248098 (+)
XLOC_037032 NA coding downstream 2493 17337151 ~ 17343544 (+)
XLOC_037033 slain1a coding downstream 14087 17348745 ~ 17386456 (+)
XLOC_037034 kbtbd7 coding downstream 89283 17423941 ~ 17425867 (+)
XLOC_037035 zgc:101559 coding downstream 94512 17429170 ~ 17434157 (+)
XLOC_037036 rgcc coding downstream 104107 17438765 ~ 17449872 (+)
XLOC_037025 BX323875.1 non-coding upstream 1320365 15982344 ~ 15985797 (+)
XLOC_037024 BX469925.2 non-coding upstream 1398342 15907033 ~ 15907820 (+)
XLOC_037023 NA non-coding upstream 1399255 15901526 ~ 15906907 (+)
XLOC_037037 NA non-coding downstream 301723 17636381 ~ 17636674 (+)
XLOC_037038 AL929161.1 non-coding downstream 328292 17662950 ~ 17663065 (+)
XLOC_037042 BX248332.1 non-coding downstream 828971 18163629 ~ 18164027 (+)
XLOC_037044 BX004817.1 non-coding downstream 981745 18316403 ~ 18316520 (+)

Expression


Co-expression Network