XLOC_037032


Basic Information

Item Value
gene id XLOC_037032
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 17337151 ~ 17343544 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074889
cgctgtttagggctgtgtgttaactgttttgaaaatgtggagtttcagttgacggctgcatcaaagcaatcaagaaaaactatAAGTATTTATGAAGTAATTTCCAAATTTTGGGCCATAACAAATCATTAACATAGCtagtgcagaaagtCATTACATGAGGTCTAGAGACAACATCCATTTGAAAAAAGATTTCAAAtttgttgattattatttttaatagaagaGGAAAAGCAGATTCGACCAACAGCAGTATCACGAGGATCCAGGAACAGCAAAGGAGAAGGAAAACATGTGTTTTTACAAAGCATTTACtgttttttctcagtggctttggtgcatttctcctaacactatttacatttgcacaacagtaaatgcatttctcaaaacaattagtacaaactgcaaaacctagttgataacatGCAAAAGCATGTCACTAGCTCAAAATGGATAGaccattcctcaaaagcaagtattaatGTCAATggaagtgtcagtgtcatcaagataaaAAGTCCTGACattattgtttatgaacaagatagtcaaatggcttattcatg

Function

GO:

id name namespace
GO:0048172 regulation of short-term neuronal synaptic plasticity biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0032591 dendritic spine membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0098878 neurotransmitter receptor complex cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074889 True 569 lncRNA 0.34 2 17337151 17343544

Neighbor

gene id symbol gene type direction distance location
XLOC_037031 scel coding upstream 2493 17306162 ~ 17334658 (+)
XLOC_037030 NA coding upstream 109857 17226244 ~ 17227294 (+)
XLOC_037029 cln5 coding upstream 477982 16854121 ~ 16859169 (+)
XLOC_037028 NA coding upstream 560536 16775987 ~ 16776615 (+)
XLOC_037027 epha3 coding upstream 718544 16449398 ~ 16618607 (+)
XLOC_037033 slain1a coding downstream 5201 17348745 ~ 17386456 (+)
XLOC_037034 kbtbd7 coding downstream 80397 17423941 ~ 17425867 (+)
XLOC_037035 zgc:101559 coding downstream 85626 17429170 ~ 17434157 (+)
XLOC_037036 rgcc coding downstream 95221 17438765 ~ 17449872 (+)
XLOC_037037 NA coding downstream 292837 17636381 ~ 17636674 (+)
XLOC_037025 BX323875.1 non-coding upstream 1351354 15982344 ~ 15985797 (+)
XLOC_037024 BX469925.2 non-coding upstream 1429331 15907033 ~ 15907820 (+)
XLOC_037023 NA non-coding upstream 1430244 15901526 ~ 15906907 (+)
XLOC_037038 AL929161.1 non-coding downstream 319406 17662950 ~ 17663065 (+)
XLOC_037042 BX248332.1 non-coding downstream 820085 18163629 ~ 18164027 (+)
XLOC_037044 BX004817.1 non-coding downstream 972859 18316403 ~ 18316520 (+)
XLOC_037045 BX004817.2 non-coding downstream 1006823 18350367 ~ 18350483 (+)

Expression


Co-expression Network