G1766887


Basic Information

Item Value
gene id G1766887
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 3918522 ~ 3923616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2023826
taagtgtgtgccctcaggcccctactccactaccacatatctacaacacaaaatccatgtgtacgtgtgtgtatagtgtgtatgtgtctgtgcctatgtgggtgttgcttcacagtccccgctaattccataaggtgtatttctatctttttaaatctgattctactgcttgcatcacaCGCAAGCCTACATccgttacctgatgtggaatagtcATCCTCTTCTCCACTCTGAGCCtgaagagattgacatgcatatatttaatgttagctctctgtgtacattcaagggccagccgtgctgccctgttctgagccaattgcaattttcctaagtccctctttgtggcacctgaccacacgactgaacagtagtccaggtgcgacaagactagagcctgtaggacctgccttgttgatagtgctgttaataAAGCTGCCCAGCACTTTAtgatagacagacttctccccgtcttagctactgttgtgtcAGTATggtttgaccatgacagtttaccatccagggttactccaagcagtttagtcacctcaaatTGCTCAATTttcacattattcattacgagatgtagttgaggtttaggacttggtgaatgatttgtcccaaatacaatgcttttagtttttgaaatatgtagGACTAACTTATCCCTTGCCACCCATTCTCAAACCAACTGCAGctctttaagtgttgcagtcatttcagtcgttgtagtagctgacgtgtatattgttgagtcatctgcacactggctttactcaaagccatgTCTAAGTAAAGAGATTGAAAGAATTACCTCCATTCATGATGTTCATGATGTTTATTTAACCCTTAATGTCTCAtgacaacaatacacacaaatctaaaagtaaagtaatgtaattaagaaatatataaatattagattgactaaaatacagtagaatagaatacagttaatacatatgagatgagtaaagcagtatgtaaacattattaaagtgactagtgttccaatattaaagtggctagtgattccaagtctatgtatatagggtagcagcctctaaggtgcagggttgagtaaccgggtggaagctggctagtttaacagtctaatggccttgagcttgaagctgtttttcagtctccctGTCCCagctgctttgatgcacctgacctcgccttctggatgatagcggggtgaacaggccgtggctcagatggttgatgtccttgattatctttttggccttcctgtgatattgaggtgctgtaggtgtcctggagggcaggtagtttgcccctggtgatgcttTGGGCAGACAGCACTACCCTCTGCAGAGCCCTGCGGTTGCTGGCggggcagttgccgtaccaggcggggatacagcccgacaggatgctcacaattgtgcatctgtaaaagtttgtgagggttttaggggccaagacaaatttcttcagcctcctgaggttgtagaggcgctgttgcgccttcatcacactgtctgtgtgggtggaccatttcagtttgtcagtgatgtgtacgccgaggaacttgaagcttccaccttctccactgcggttccattgatgtggataggctTGTGctgcctctgctgtttcctgaagtacacaatcagcttctttgttttgttgacgtggagggagaggttatttttccTGGCACCaatctcccagggccctcaccacctccctgtaggctgtctcgtcattgttggtaatcaagcctactactgttatgCCTgatgcaaacttgatgattgagttggaggcgtgtgtggccacgcagtcatgggtgaatagggagtacaggagtgggctgagcacgcaaccttgtggggccccagtattgaggatcaaCAAAATAGAGGTGTTGTttcttaccttcaccacctggggttgccccgtcaggaagtccaggacccagttgcacagggcggtgttcaggcccagggtctcaagcttaatgatgagcttggagggtattatggagttgaatgctgagctatagtcaatgaacagcattcttacataggtattcctattGTCATGATGGGACAgagcagtgcgatggcgattgcattgtctgtggatctattggggcggtaagcaaatgtAAATGGGTCTAggttgtcaggtagggtggaggtgatgtgatccttagctatcctctcaaagcacttcatgatgacagaagtgagtgctacggggcaatagtcattttagttcagttacctttgctttcttggctacaggaacaatggtggacatcttgaagcaagtggcgacagcagactgggatagggagagattgagtatgtcagctggtctgcgcatgatcTAAGGACGCgtctagggatgccgtctgggccggaaGCCTTGCAAGAATTAAGACATGTCATTGTTTTTATGAGAAGTGTTCCTGAGGCAGCACATGgcggtttcccggacacagatgaAGCTTTGTCCTGGACTAAGAAGCTTGGTTAATAGAGAAGCTTTATAGTCCAGAATTAAGATGAAACTGTCCGGGAAACCGTCCCTATGTGTCTGTCTACTACCTGCCTGCGAGGGAATACCTCCTCATCCACAGAGATCATATTTGATATGCTGTTTTTGTGATTCCATTTGACTGGTATTTTTAAAAGAAAGTCTATAGATTTTATCACAAAGAAAATATACAAAGTAGTGACAATTGTATTTAAGAAATTCTAAATGTATTTTCAGTGTTGGATGTAGAATCTGTAAACCAAAtaatttgtgtgcgtgtgtgtgtttcagcattTAAGTGTGATAGGAGACGGAGAGGAGAATGTTTAGGTTGTCAACAATATGCTTTGTCAATTCTCTTGTATAATGTGACTTACGACAATTCTTACATAATCCTGTTTCTAGATGTCATAGACTGCAGCTATTTGTGGTAGGAAACATAAGGTGAATCGAGACATCTATTATTAAGCAGTATTTCACACTTGAGCCAAGAAGAACATAACTTTGATATTCATCATAATTTACCACAGTGAAAAGAAGGCAAAATAACGTTGCAGGTGCTGAGTTTGATGCTGTTGAAAGTCTCAATGTTTTCTACACTGTTTGCACGGTTTTCTACCAAATTGTGAACTGTTGGATTCAGCTGATGCCTGAACTGAGATTGGAAGGAAGTGAAATCAGATTCTTGTTAGCTGTAATAGACACCTTCcttctgttttttgtttgttttcatgaaGAGATTTGAAAAATAGTTAAATAAAACTATCCAATAAAGATGTCTGTTTGGAAAAAAAGGATGACCACTACTTTATGGCTAGCAGTACACTTATCTTGACATTTCTATGAATATCCTCTTCATAATAGGTACATTTTAATGCCTCATGGGCTATGCATACTACTGGCATTATAATGCACAATTTAGGTGCGAAGCTGCTCTGTTGATAAAGCATTTTGAGCAGGCAGCAGGTTTAGGAAGCAACGTGTTATAATCCATATTCTGAAATGAAACATTGTTACAAAGTCGTATTCACATTTTATTACTCAAAATGAGGCATCATTgccatacagtgagctccaaaagtattgggacagtgacacatttttgggATTTGaaatgactgaggttaaagtgcagactctCAGCTTTAACTTTTaaggtacactacatggccaaaagtatgtggacaacccttcaaatttgtggatttggctgtttcagccacacccattgcttacaggtgtataaaattgagcacaccaccatgcaatcttcatagacaaacattggcagtagaatggcccatactgaagagcgcAATGACtttcgtcataggatgccacctctccaacaagtcagttaatcaGATTTCTGCGCTGCTAGAGCTGCCATGGTCAACCgtaagtgctgctattgtgaagtggaaacatctatgaGCAACAAAGGCTCAACCGTGAAGTGGTAggacacaagctcacagaacaggactgctgagtgctgaagcgtgtaaaaaatagtctgtcctaggttgcaacacacactacagagttccaaactgcctataGAAGCAAGGCTTcttgaaataggtttccatggccgaggatcaccatacgcaatgccaagcatcagctggagtggtgtataaCTTCCCGCCATTAGACTATGGAGgggtggaaacgcgttcttGGTAGTCTGagggactaatctgggtttggcggatgccaggagaacgctacctgccccaatgcatagtgccaactgtaaatttggtagaggaggattaatggtctggggctgtttttaatggtttgggctaagccccttagttccagtagagaaatcttaacgcaacagcatacaatgacattctagacgattctgtgcttccaactttgtggcaacagtttggggaaggcctttcttgtttcagcatgacaatgcgccCATGCgtcattcctaactcagttgccagagaggacaGAATCCGCTAAGGGATTTCACCattaggccaatggtgactttaaaaccttTGCAAGTTTAAAATGgttgtgataagagaaaactgaggagagatcaacaacattgtagttactccacaatactaacctaattgacagagtgaaaagaagaaatcCTGTAcggaatacaaatattccaaaacatgcatcctgtttgcaagcAAGGCACTaaaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctatgcttttaacggacctctgagactatcacagtgcaggtgcatttatatggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcatcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2023826 True 5067 lncRNA 0.43 2 3918522 3923616

Neighbor

gene id symbol gene type direction distance location
upf3a LOC106581644 coding upstream 43 3888821 ~ 3918479 (+)
cdc16 LOC106581643 coding upstream 33163 3849985 ~ 3885359 (+)
itgbl1 itgbl1 coding upstream 471657 3331567 ~ 3446865 (+)
LOC110501252 LOC106581638 coding upstream 1418978 2492932 ~ 2499544 (+)
dachd dach1 coding upstream 1980765 1603473 ~ 1937757 (+)
ppp2r3b LOC106581654 coding downstream 578065 4501681 ~ 4562208 (+)
LOC110501273 LOC106581650 coding downstream 839405 4763021 ~ 4775898 (+)
LOC110501275 LOC106581666 coding downstream 1100284 5023900 ~ 5119712 (+)
LOC118943573 NA coding downstream 1268313 5191929 ~ 5197396 (+)
obsl1b LOC106581677 coding downstream 1744596 5668212 ~ 5739785 (+)
G1766899 NA non-coding upstream 1861 3916051 ~ 3916661 (+)
G1766856 NA non-coding upstream 54526 3863547 ~ 3863996 (+)
G1766830 NA non-coding upstream 81431 3832112 ~ 3837091 (+)
G1766813 NA non-coding upstream 99176 3819143 ~ 3819346 (+)
G1766788 NA non-coding upstream 103558 3803485 ~ 3814964 (+)
G1766968 NA non-coding downstream 30145 3953761 ~ 3954191 (+)
G1766981 NA non-coding downstream 36509 3960125 ~ 3960326 (+)
G1766982 NA non-coding downstream 37444 3961060 ~ 3961322 (+)
G1766983 NA non-coding downstream 38241 3961857 ~ 3962161 (+)
G1767052 NA non-coding downstream 96447 4020063 ~ 4020320 (+)
G1764876 NA other upstream 1476014 2441073 ~ 2442508 (+)
G1764378 ebi2 other upstream 1890119 2016109 ~ 2028403 (+)
klf12b klf12 other upstream 2577140 1245440 ~ 1412460 (+)
G1762567 NA other upstream 3196392 717522 ~ 722130 (+)
G1769230 NA other downstream 1876899 5800515 ~ 5825298 (+)
G1769403 NA other downstream 2012754 5936370 ~ 5936792 (+)
G1769461 NA other downstream 2133663 6057279 ~ 6057582 (+)
G1769469 NA other downstream 2137679 6061295 ~ 6061739 (+)

Expression

G1766887 Expression in all Baseline Samples

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G1766887 Expression in each Bioproject

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G1766887 Expression in each Sample
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Co-expression Network