G1768402


Basic Information

Item Value
gene id G1768402
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 5028749 ~ 5031511 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2025479
AAATTATCTCTGTGACTAAAATCTGACCATTAAATGAACTGGACAATCATTTTTGGAGAGATTGAGAGCTTTACAGTGATAAGCACAATTAATATTAGCAGCACAGATGCGCTGTGCAGTTCTGTTCAGCAGAGGGAAGGATCCGACACACAGCCTAGCCTACATCAGCTGGTGAACTGTAGGGGAGCAAGCGATGAGTGTGGGCAGACAGGCTCCGTTTCAGCTCTGCCTCTGATTATACACATCGTGCACGCAACTCTCTTGCTTCCCCATAGCTATCCAGTCATCACCAGTCTTCTAGTAAAATGTGCCTGCTTATTAAGAAACACAAGCtgctttacaaaataaaaaaaacattaaagaTGCACCATGCAGAAATCACTCCAACATTTCCTTGTTGATAGTTTagtagtttgcctaatttcagtttatgtgacaaaacaagcagtcattgtaccatctaatcCGCTGTGGAATCTCAGGGCAGACACACCACAATGCCACTGAGTTGGTTCTATACTAAACTGTGACATGGCCTTTAATTGTTTCCAATTACAGGATTATAAGTTTTCATACCTTTGTTCATGAAACAGGTTGAAAGTAAAACATTCTGTCTGCTAGGCACAGTTCTAACTGAAacacagcttgagaggattttCCACAGCAATTGTGAACTATTCCACCCTAATGGCTGCTATATTCTCCCAGTTACAGCTGTAGTTAGTCCGAATTTGCTCCTTATATGGGCATTGCAAAGTAGCGTTTGTAGCCATTTGTTTACATGCTCATGTAACTGGTAGGATGTGAACCCCCCAGTCTCCTGCTCCATAACCAAACGTCTTAACAATTAGACCCCAAAAATATTCCGTCTTTGGCCGAGGGTGGCTTAAGTCGCAGGCAGGGCTACCTCATCAATAGAACATTTAAACTCCCCTCCGCTACACtcatcccagaaatgttacattTCACTCTGTACTAATTTGAATATACTCTGTGATTCATGGCAAGAAGTACTGTATATGGCAGAAATACATTACTTTTAAAATCAAACAATGATAGGAATTACTTTTTGTAGATTAAAAGTTTGCAAAATAGTGGCTCAGGTTGCAGCATTTTAGTAAAATAGCTGACAAGGCCCTCATGGGCCAATCTGTGGTGGCTCCACATATCTGCCTCTGTGCCAAATATGGTGTGTTAATCTGAAAATATGTCTTCTGAACTGCAAATTATAACACCGTCTGTGGCCATTTCATAAGATGACTGCCAAGACCCTCATGGGCCAAATCTCTGGGGGTTCCATATGTAATTTTTTCCAGGCTATATAAATCTACCTATGTGACAAATTTTGTGTGTTTATCTCAAAAAAAGCCTTCAGAACTCTAAAATTGTATTACCAACCGTGGCCGTTTATGGTGTATTAATCTCAAAATATTCCTTCTGAActtcaaattacaacacagtctgtgGCCATTTCGTAAGATAATTGCCAAGGCCCACATGGGCCAAATCTCTGGGGGCTCCATGTCTAAATCTTTTCGGGGTCCATAAATCTACCTAATGGTGAAATTTGGATACCTGAATACCAAAATATAGTAGCTgtgtccgaatacccatactaatatactgtatactaaatACTAAATGAGTATACACCACATACTATCATCTTAGTATAATGTAAACAAacagtatcctttcagttgagtgttctagCGCTttgcctgtctaccggaagtaGATGATGTTGCTAGGCAAaatcttgctagcttgttagcatagcTAATAAATTACGAACTAGACATCTTACAACTtcattaacaatgtccattgagaacacaCAATGAATATACAACTTGGCTATGCTAAGAAtgacgtgaataatcaagtcaataaacgttgggtagttagttagatagcatatACAGTAGTTACAATACTGTCAAGTTTTATATATTaatagccaactaacgttaggta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2025479 True 1977 lncRNA 0.39 2 5028749 5031511

Neighbor

gene id symbol gene type direction distance location
LOC110501274 LOC106581657 coding downstream 110777 4794026 ~ 4917972 (-)
LOC110502104 NA coding downstream 236342 4790325 ~ 4792407 (-)
LOC110501269 LOC106581656 coding downstream 272488 4675515 ~ 4756261 (-)
LOC110501268 cssa25h2orf47 coding downstream 369058 4653481 ~ 4659691 (-)
LOC110501266 LOC106581655 coding downstream 414091 4610896 ~ 4614658 (-)
LOC110501278 LOC106581673 coding upstream 146276 5177787 ~ 5195340 (-)
trim63b LOC100505419 coding upstream 153338 5184849 ~ 5186616 (-)
lrrc3 LOC106581660 coding upstream 193051 5224562 ~ 5226359 (-)
pcbp3 LOC106581674 coding upstream 212890 5244401 ~ 5417899 (-)
LOC110501280 LOC106581675 coding upstream 405526 5437037 ~ 5612283 (-)
G1768237 NA non-coding downstream 71524 4956975 ~ 4957225 (-)
G1768230 NA non-coding downstream 78265 4949389 ~ 4950484 (-)
G1768198 NA non-coding downstream 93083 4908314 ~ 4935666 (-)
G1768106 NA non-coding downstream 203855 4758867 ~ 4824894 (-)
G1767972 NA non-coding downstream 554665 4472290 ~ 4474084 (-)
G1768437 NA non-coding upstream 45087 5076598 ~ 5079315 (-)
G1768410 LOC106581666 non-coding upstream 63137 5094648 ~ 5119719 (-)
G1768413 NA non-coding upstream 71943 5103454 ~ 5110473 (-)
G1768498 NA non-coding upstream 174057 5205568 ~ 5205775 (-)
G1768500 NA non-coding upstream 175172 5206683 ~ 5206925 (-)
fgf14 fgf14 other downstream 1254740 3447431 ~ 3774567 (-)
G1766126 NA other downstream 1702406 3325721 ~ 3326343 (-)
klf5b LOC106586047 other downstream 3601029 1420358 ~ 1428026 (-)
G1763459 NA other downstream 3809032 1218802 ~ 1219717 (-)
G1762219 LOC106593246 other downstream 4923392 86357 ~ 105357 (-)
G1769281 NA other upstream 769250 5800761 ~ 5825307 (-)
G1769618 NA other upstream 928639 5960150 ~ 5960815 (-)
G1771092 NA other upstream 2220273 7251784 ~ 7256717 (-)
G1771426 LOC106582012 other upstream 2430702 7462213 ~ 7464692 (-)
LOC110501323 LOC106581977 other upstream 3593511 8624815 ~ 8684792 (-)

Expression


Co-expression Network