G1768410 (LOC106581666)


Basic Information

Item Value
gene id G1768410
gene name LOC106581666
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 5094648 ~ 5119719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2025490
TCAATGCTCGAGTTTATTAGAAAGTCTAATTCATTTTTATTTCCCCCGTTCCCAGATGAAACACAAAGTttagtaaaacaaaacaaaaaacagctTGACAAGTACATTCCATATTCAAAAACTGGAACATGTGTTTGAGGCAGTGGTTCCAGAAGTGCATTGACGTTACATGATGAATTCCTTTTGACGCTGAGAAATTGGTTTAACTcattatatacacactgccagGTAGGACTTGTGTTAGCATCAGCGTGAACTCTGCAACTAGGAGAGTATTTGGCATGGTGAGGGAAAGTAAATTGGGggatatatcaaatcaaatgttattcatcacatgctttgtaaacaacatgtgtagattaacagtgaaatgcttacttacttctATAGTGAAGTAAAATAAACCTATGATGACCCTTTCAAAGTCATtgtggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagtg
>TU2025489
TCAATGCTCGAGTTTATTAGAAAGTCTAATTCATTTTTATTTCCCCCGTTCCCAGATGAAACACAAAGTttagtaaaacaaaacaaaaaacagctTGACAAGTACATTCCATATTCAAAAACTGGAACATGTGTTTGAGGCAGTGGTTCCAGAAGTGCATTGACGTTACATGATGAATTCCTTTTGACGCTGAGAAATTGGTTTAACTcattatatacacactgccagGTAGGACTTGTGTTAGCATCAGCGTGAACTCTGCAACTAGGAGAGTATTTGGCATGGTGAGGGAAAGTAAATTGGGggatatatcaaatcaaatgttattcatcacatgctttgtaaacaacatgtgtagattaacagtgaaatgcttacttacttctATAGTGAAGTAAAATAAACCTATGATGACCCTTTCAAAGTCATtgtggatgtgtgtgtgtgtgtgtgtgtaaataacgATTTATTGATGATCTCTGTCCCAAGATGGTCATACACATACATTTTAATTATAAAACCTTATTCTCATGAGTTTATTATTTTATGTTAATAAACATATGGTGTAACTGTTGCAGAATTTTTTACATTACAAACACTGGATGTACTCTGCAACTCCTTCAGAGAACTAAAAAACACTATGTAGCACCAGTAGGAAAAATCATGCAGCAAATTGTGTTGCTTTCATTTTGTGAAAAAGACTTCAAGATTGTTTTTGATCAAATCCTGTTCATGGAATCCAGTGCAGCCACCTTTCCTTTGGTATAGCTTTTCTTTGGCCATTTGAATTGGTTTTCTTCCGAATCTCAGAAGAGGAATACGTTGACAATGAATCAATGTCCTCCTATGTTCGTATTGCGGCAATGACTCCTTGGTTGACAGGTGCTGCTTTTCCACAGGTCTTCTCACACTCCTCTTGAGTTTCGAAGCGATTCTGGTTGCCGCCACAGCCTCCGTACCAGAAGCGTGTGCAGCTCTTGCCGAGTGCATCGTAGTGCCACTTGAGAACAAACTTTGCGCATGCGCCTTCCTCTTTGGGGAGCTGACAGATTTCCACTCCTGTCAAGGCCGCTGTGAGGGAGGCGAGAATAGGCAGGCCAATGAATATGTGTCCGACATGGTTCGAAAACCAGGGTTAAGCCGTTTAGCCAAAGCCTATGCATTGTGCACATAGGAAAGCAAGGACACcgcagaacactctgctctgaaaaGGTACACTGTTAGGATATAATACAATGGTGTAGCTAAGGACATGTTTTTGCAGGTGTAGTGTGTACAGAACATGCTTCATGCAGTGGGAATGAACATCGAATGACATCCAACGTCAATAAACATGTTGTCAGTTTTTGTTTGTGGAGACATGTTGGAATTCATTTCAGGATAACACAAAACAGGGACATCTGTTATCCATTGACATGACATCTGTTTATGTTGAATATTTGTCCACGTGTTTTTGGGGATGCCTGTATGATCCAATAGTTGATCCAATGGATATTAATTGCAACATAATAGAGGTGAATATGACATACAACTTGAGAGAAAGCCACCACAAGCCATTCCTTCTTCAAACTCAAGATCTCGAATATAGTTTACAGTACCACAGATCATAATAAGAACTCTCTGCTGCCCATTTAGGCCAAGACCTAGGAAAACTAAGTCTGACAATGAACCACTTAATCAGGCTCATTTTTGCAAAGTTCTCTAGTCCAAAACACAATGAACCATGCAAAGAATAGCCCTCTTCATTAATTTGCTCCACGCTTATGACTTGGCCCAGTCTCAGGGAAGACTAAAGTATAACTTTCCCTTTCTCCATGCTTGGCTTTTCACTCATTCCATACTTCATTCAGAGGCAATGGAGGGTTTATAGCCAGACACAAAGGGAATCTTTGTTTCCAAAGTGAACACAGACCGAGGAAATTGTGTTACGCAATGTATATAACCTGCTACAGTAGAGATTATATATCACTGTTTTCAACGGATCTGGGCAAAAGGACTGAATTTAAATCATGTTTCAGTTGAGAGTCAGAGTTGTCTGCCTGAAACCTAGACATGTTGGTTAGGAGGAAATGCTTTCATGTTTATGTCAGCTGAACCGCAAAGCATTTGGATGACGCACTCAACAGCGATCAAAGCCGGTCATATGTTCTACAGAGGTAGTTGGAATGGATCAGGCTGTAATGTATTAAGATGAGAGACCACAACTAAATGTGAGGCATGTTTTTTCCACCATAGTCTGAGAATagtggtcctttgtagctcagttggtagagcctggtgcttgtaatgccagggcagtgggttcgattcctgggaCTACCCATGTGTAAATTGTATGCACTAACGACTAAGTTGCATTTGATAAAAGTATCTACTAAATGGCATATGTACAACACAATAggaatattgagttgtacccacttttggcctcagaacagcctcaattcatcggggcatggactctacaaggtgtcaaaa

Function

NR:

description
collagen alpha-3(VI) chain isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2025490 False 499 lncRNA 0.38 3 5094648 5119719
TU2025489 True 2478 lncRNA 0.40 4 5115897 5119719

Neighbor

gene id symbol gene type direction distance location
LOC110501274 LOC106581657 coding downstream 176676 4794026 ~ 4917972 (-)
LOC110502104 NA coding downstream 302241 4790325 ~ 4792407 (-)
LOC110501269 LOC106581656 coding downstream 338387 4675515 ~ 4756261 (-)
LOC110501268 cssa25h2orf47 coding downstream 434957 4653481 ~ 4659691 (-)
LOC110501266 LOC106581655 coding downstream 479990 4610896 ~ 4614658 (-)
LOC110501278 LOC106581673 coding upstream 58068 5177787 ~ 5195340 (-)
trim63b LOC100505419 coding upstream 65130 5184849 ~ 5186616 (-)
lrrc3 LOC106581660 coding upstream 104843 5224562 ~ 5226359 (-)
pcbp3 LOC106581674 coding upstream 124682 5244401 ~ 5417899 (-)
LOC110501280 LOC106581675 coding upstream 317318 5437037 ~ 5612283 (-)
G1768437 NA non-coding downstream 15333 5076598 ~ 5079315 (-)
G1768402 NA non-coding downstream 63137 5028749 ~ 5031511 (-)
G1768237 NA non-coding downstream 137423 4956975 ~ 4957225 (-)
G1768230 NA non-coding downstream 144164 4949389 ~ 4950484 (-)
G1768198 NA non-coding downstream 158982 4908314 ~ 4935666 (-)
G1768498 NA non-coding upstream 85849 5205568 ~ 5205775 (-)
G1768500 NA non-coding upstream 86964 5206683 ~ 5206925 (-)
G1768513 NA non-coding upstream 95499 5215218 ~ 5217126 (-)
G1768518 NA non-coding upstream 100468 5220187 ~ 5220396 (-)
G1768533 NA non-coding upstream 112823 5232542 ~ 5232922 (-)
fgf14 fgf14 other downstream 1320639 3447431 ~ 3774567 (-)
G1766126 NA other downstream 1768305 3325721 ~ 3326343 (-)
klf5b LOC106586047 other downstream 3666928 1420358 ~ 1428026 (-)
G1763459 NA other downstream 3874931 1218802 ~ 1219717 (-)
G1762219 LOC106593246 other downstream 4989291 86357 ~ 105357 (-)
G1769281 NA other upstream 681042 5800761 ~ 5825307 (-)
G1769618 NA other upstream 840431 5960150 ~ 5960815 (-)
G1771092 NA other upstream 2132065 7251784 ~ 7256717 (-)
G1771426 LOC106582012 other upstream 2342494 7462213 ~ 7464692 (-)
LOC110501323 LOC106581977 other upstream 3505303 8624815 ~ 8684792 (-)

Expression


Co-expression Network