G1768413


Basic Information

Item Value
gene id G1768413
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 5103454 ~ 5110473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2025500
AATAATGCCTTTGTGTGTGGCCGCAACGTGGCCCTGGGCGGTGCGTGTGGTCACCACGGCGTGGTAGGTCTGGGCGCTCTCCAGGCCGCCTACAGTGAGCTCCGTGCCTGTCACATTCCTCCTCAGCACCAGTGTGTGGTCGCGCAGGCGCGTCACCACCACCTCGAAGTAGGCTATGAGCTTGGGGTCCGGGCTGGCCCAGCGCAGGGTCAGGccactggaagtggtgttggctACGTGCAACTCCTCTTGCTTTCTTGGATGGACTGCCTGGTGATTTTCGTGGTGTTTTTGATGTTTCCCTTGGGCAGCAGTCGGCCAAAGTTCTGAATGTGCTTGTCGTAGAAGTGTGAGGTGCTGGTCAGCCTCTTGAAGAAGACGTCGGAGGGCTCACTGGCCATGCGCATCATCACGCGGGCGTCCCCAGCACTAAGTTTCTCGCCAACGCCCAGGATGACCAAGAAATAGCCCTTGCACTTGGCATCGGTGGCCACGGCAACCAGccgctcctcatcctcctccactgGGCCTGTCACGAACAATGTCAGCACCTTGAGGTCACGCTGGTGGGGCGCCCTTTCAAACACCTGCTCCACCGTGTGCTCGATGGCTGCCGCCAGCGCCCGCCCACCCTCCAGTTGGGGCGTTTTGTCCAGGAGGAAGTTGCGGATGTCTTGGGCCGAGCGGTGGTCGGTCAGACCCACGTCCACGCGGATCGGAGAGCCGCTGCTGTTGCGCAGGAACTCGTAGGGTGCCTGCTGGATCACAGCCACACGGGCGTGGTGGATGGATGCCATAGGGTCTGACGAGACTTCAAGTTGCTCTACAATGTGAGCAACATAGCGTTTAATCTCGGTGAAGACAGTGGGGTAGGTGGTCTCGGAGCTGTCCATGACGAAGGCCATGTCAATGTCCACGTCAGTGGTGGAGGACCTCCTGTCTCTCGACTGCTGAGGGGGGACGTAGTCACACATTTGCTCATGACCTTTTGGATAGCCGAGTTGTACTGTGCACTTCCGGGATTAGGCAGTACGATCACCTGACCCAGTGCTGACCCAGTGTTGTTCATCTTCAGGGCTCTGGTAAGCTGGCCATCCTCTTTGTTGACCAGAAACACCGAGGCGATGCCGGAGTCATAGAGACGGAGGGCCGCGGCGCTGACTGCCCGCTGATCCTTCACTGGCCCGTTGACAAAGAATATGGCCACCTTCCTCATGAGGAAGCCGCTGCGCACCCTCTTGAAGGTGTTCTGCGCCAGGAAGTTCATGGCCGTCTCCAGGCTGCGCTGTTTGCGCGTCTGTAATGCCTGCAAGCCTTCCACGCGCTGCACCAGGGAGCGGCGTTTCAGCGCATCGGCAAAGCGGATCTCGGTGGTCACCTCGTTGTTGTAGAGGGTGAGGGCCACGCGGGCACCGCGTGGGCAATTGCTCTCGGAGATGGTGATGTTGCCGACCAGGCGGAGCACGGCGTCACGCATGTTGTTGAAGGCGGGCCGACCCACGCCGTCTGAGGCGTCCAGGGCGAAGGCTAGCTCAGTGGGGTAGAGAGGGCACTCCTGTTGACCATAGCAGCAAGGACAGTTGTCTCTGATTTTCTTCACAAGGTCACATTGCACAACGCCAGGTCCTCTCGGTCCTTTCTGGCCATAAGGCCCGGGGTATCCAACCTCTCCCTTTTGACCCGGAGTACCGATTTCACCTGAAACACCCCTCTGGCCACGgtttcctatgggtcctggtccgcCATTGTTTCCTCCATCACCTGCCGCCCCCTTTGGTCCTGGGAATCCTGGGAAGCCCTCATCACCCTTTCTTCCTTTGGGCCCTGCGATACCAAATCCATCTCGACCATCTTCGCCCTGTAAGAAGAGAATACTGAGCTTACCGC

Function

NR:

description
collagen alpha-3(VI) chain isoform X5

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2025500 True 1887 lncRNA 0.59 11 5103454 5110473
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110501274 LOC106581657 coding downstream 185482 4794026 ~ 4917972 (-)
LOC110502104 NA coding downstream 311047 4790325 ~ 4792407 (-)
LOC110501269 LOC106581656 coding downstream 347193 4675515 ~ 4756261 (-)
LOC110501268 cssa25h2orf47 coding downstream 443763 4653481 ~ 4659691 (-)
LOC110501266 LOC106581655 coding downstream 488796 4610896 ~ 4614658 (-)
LOC110501278 LOC106581673 coding upstream 67314 5177787 ~ 5195340 (-)
trim63b LOC100505419 coding upstream 74376 5184849 ~ 5186616 (-)
lrrc3 LOC106581660 coding upstream 114089 5224562 ~ 5226359 (-)
pcbp3 LOC106581674 coding upstream 133928 5244401 ~ 5417899 (-)
LOC110501280 LOC106581675 coding upstream 326564 5437037 ~ 5612283 (-)
G1768437 NA non-coding downstream 24139 5076598 ~ 5079315 (-)
G1768402 NA non-coding downstream 71943 5028749 ~ 5031511 (-)
G1768237 NA non-coding downstream 146229 4956975 ~ 4957225 (-)
G1768230 NA non-coding downstream 152970 4949389 ~ 4950484 (-)
G1768198 NA non-coding downstream 167788 4908314 ~ 4935666 (-)
G1768498 NA non-coding upstream 95095 5205568 ~ 5205775 (-)
G1768500 NA non-coding upstream 96210 5206683 ~ 5206925 (-)
G1768513 NA non-coding upstream 104745 5215218 ~ 5217126 (-)
G1768518 NA non-coding upstream 109714 5220187 ~ 5220396 (-)
G1768533 NA non-coding upstream 122069 5232542 ~ 5232922 (-)
fgf14 fgf14 other downstream 1329445 3447431 ~ 3774567 (-)
G1766126 NA other downstream 1777111 3325721 ~ 3326343 (-)
klf5b LOC106586047 other downstream 3675734 1420358 ~ 1428026 (-)
G1763459 NA other downstream 3883737 1218802 ~ 1219717 (-)
G1762219 LOC106593246 other downstream 4998097 86357 ~ 105357 (-)
G1769281 NA other upstream 690288 5800761 ~ 5825307 (-)
G1769618 NA other upstream 849677 5960150 ~ 5960815 (-)
G1771092 NA other upstream 2141311 7251784 ~ 7256717 (-)
G1771426 LOC106582012 other upstream 2351740 7462213 ~ 7464692 (-)
LOC110501323 LOC106581977 other upstream 3514549 8624815 ~ 8684792 (-)

Expression

G1768413 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.2.
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G1768413 Expression in each Bioproject

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G1768413 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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Co-expression Network