XLOC_037047 (BX957328.1)


Basic Information

Item Value
gene id XLOC_037047
gene name BX957328.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 18605460 ~ 18608269 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072912
GAGAAGGGTAATCCTGCACAACCGGAGTAGCTGCACTCTcaggaccgcatttttaggaccGCATCTTTAGGACCCTAGTTTTTTGTGACAGCGTCAACTGTCGGATTGGATCATGGATGCGCTAATGGACGACATGGATGACAAGGCAAGTgcCGTCCTACATGCTCTGGGTGTCTTGAGGAGCTGGTCgttggatgatttttttttttcaggtcttTTTTTCTGGTAAAGATTATCCTTACAGTgaagtaaaataatttaacagaCAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCAATAGtccctttatttatcaggggttgccacagcagaatgaaccaccaacttatgcagcatatgttttacaccgtggatacccttccagccgcaacccagtactgggaaatacccatttacactcatacacttgaacatggggagaacattcaaactccacacagaaatgaccactggccaagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtgctaaccactgtgctgccccatgTGCTCTATGCGGAGGCTTCTAGAGATcgtgacctgtgaagagatgatgccaccatagaggacttctagatGTATCCATAATCCTGAAACAGACCGTATCATGAGCAGATGcagtggtggtcatggagaagtggagagcatgagactgattaacGAAAGATCCCAGTGACAGATGAGTgcccgcattgatcctgtggtcCAGCCTGAAAACCCGCTGGtaacctactcacacctgcagcttctccacaatggacgcCCAGTGTTCTtcagcctccagcgcctagactgcggCTCTGCACGTGAAGTGTGGCCAaaagagaaatggt
>TCONS_00072913
ATTGGATCATGGATGCGCTAATGGACGACATGGATGACAAGGCAAGTgcCGTCCTACATGCTCTGGGTGTCTTGAGGAGCTGGTCgttggatgatttttttttttcaggtcttTTTTTCTGGTAAAGATTATCCTTACAGTgaagtaaaataatttaacagaCAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCAATAGaggacttctagatGTATCCATAATCCTGAAACAGACCGTATCATGAGCAGATGcagtggtggtcatggagaagtggagagcatgagactgattaacGAAAGATCCCAGTGACAGATGAGTgcccgcattgatcctgtggtcCAGCCTGAAAACCCGCTGGtaacctactcacacctgcagcttctccacaatggacgcCCAGTGTTCTtcagcctccagcgcctagactgcggCTCTGCACGTGAAGTGTGGCCAaaagagaaatggttgtgcccaactaagcctagtttctctcaaggtttattcctttactttcatcaattggtaaagttttgttcctccactgtcgccattggcttgcttggtttaggacttgtggaactgtgcatcgatggatttgcttttcagtgtttggactttcagcagtgaaaactaaaccacactgaatttaataaatgttaagctactttgacacaatctacattgtaaaagtactttaaaaaataaagatgaaattaatTGAAATTGTATTGAATATTCAACA
>TCONS_00072914
CATGGATGCGCTAATGGACGACATGGATGACAAGGCAAGTgcCGTCCTACATGCTCTGGGTGTCTTGAGGAGCTGGTCgttggatgatttttttttttcaggtcttTTTTTCTGGTAAAGATTATCCTTACAGTgaagtaaaataatttaacagaCAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCAATAGtccctttatttatcaggggttgccacagcagaatgaaccaccaacttatgcagcatatgttttacaccgtggatacccttccagccgcaacccagtactgggaaatacccatttacactcatacacttgaacatggggagaacattcaaactccacacagaaatgaccactggccaagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtgctaaccactgtgctgccccatgTGCTCTATGCGGGTGAGTgggattgacaaaccacctggAGGACACACTCTTGCTTTCTTAATGCatgtttcatgtttatttatataactgctattttatctcatagcacttcatttttgtcttaatatttaatatcttttgtttaaatacaccatgAACAGCAGCTGCGCTAATTATTTTCCTTGTtccctatttccacctggggatatttATCTAGAGGCTTCTAGAGATcgtgacctgtgaagagatgatgccaccatagaggacttctagatGTATCCATAATCCTGAAACAGACCGTATCATGAGCAGATGcagtggtggtcatggagaagtggagag
>TCONS_00072915
gcCGTCCTACATGCTCTGGGTGTCTTGAGGAGCTGGTCgttggatgatttttttttttcaggtcttTTTTTCTGGTAAAGATTATCCTTACAGTgaagtaaaataatttaacagaCAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCAATAGgggttgccacagcagaatgaaccaccaacttatgcagcatatgttttacaccgtggatacccttccagccgcaacccagtactgggaaatacccatttacactcatacacttgaacatggggagaacattcaaactccacacagaaatgaccactggccaagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtgctaaccactgtgctgccccatgTGCTCTATGCGGAGGCTTCTAGAGATcgtgacctgtgaagagatgatgccaccatagaggacttctagatGTATCCATAATCCTGAAACAGACCGTATCATGAGCAGATGcagtggtggtcatggagaagtggagagcatgagactgattaacGAAAGATCCCAGTGACAGATGAGTgcccgcattgatcctgtggtcCAGCCTGAAAACCCGCTGGtaacctactcacacctgcagcttctccacaatggacgcCCAGTGTTCTtcagcctccagcgcctagactgcggCTCTGCACGTGAAGTGTGGCCAaaagagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092802

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072912 False 878 processed_transcript 0.48 5 18605460 18607993
TCONS_00072913 False 750 processed_transcript 0.42 4 18605564 18608269
TCONS_00072914 False 784 processed_transcript 0.43 4 18605571 18607805
TCONS_00072915 True 706 processed_transcript 0.48 4 18606737 18607988

Neighbor

gene id symbol gene type direction distance location
XLOC_037046 lacc1 coding upstream 17706 18572970 ~ 18587754 (+)
XLOC_037045 BX004817.2 coding upstream 254977 18350367 ~ 18350483 (+)
XLOC_037044 BX004817.1 coding upstream 288940 18316403 ~ 18316520 (+)
XLOC_037043 dnajc15 coding upstream 326880 18215940 ~ 18278580 (+)
XLOC_037042 BX248332.1 coding upstream 441433 18163629 ~ 18164027 (+)
XLOC_037048 serp2 coding downstream 108216 18716485 ~ 18721416 (+)
XLOC_037049 gtf2f2b coding downstream 221091 18829360 ~ 18905317 (+)
XLOC_037050 NA coding downstream 303428 18911697 ~ 18914987 (+)
XLOC_037051 chmp2ba coding downstream 431339 19039608 ~ 19057957 (+)
XLOC_037052 crfb1 coding downstream 486754 19095023 ~ 19133001 (+)
XLOC_037038 AL929161.1 non-coding upstream 942395 17662950 ~ 17663065 (+)
XLOC_037037 NA non-coding upstream 968786 17636381 ~ 17636674 (+)
XLOC_037053 NA non-coding downstream 620550 19228819 ~ 19229066 (+)
XLOC_037062 NA non-coding downstream 1186885 19795154 ~ 20053449 (+)
XLOC_037063 NA non-coding downstream 1189982 19798251 ~ 19810178 (+)
XLOC_037064 CR933734.1 non-coding downstream 1213188 19821457 ~ 19823614 (+)

Expression


Co-expression Network