XLOC_037050


Basic Information

Item Value
gene id XLOC_037050
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 18911697 ~ 18914987 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072918
TCTACAGGAGACAAACAACACACACTAAACTAGAGAATCTGAAGTCCTCAGTGAAAAAACACCAGCCTAAAAACTGACCAGGCTATCAACATGATTTCCCATCCTGTTTAACTGATTTTAGAGAGGGTTGACAACTTTATTTGGCTGAGGCCTGTGCTGTGGGGAAGAACGAAAACCCTCTCTTTTCTCCTCAGAATAAATCTTTGTCCTTAATTTCATCCTTATCATATCCAGTGCTGCTGTGTTTGATCTGCTTTGATCCTA
>TCONS_00075080
CTAGAGAATCTGAAGTCCTCAGGTAATTATTAATAGATTACAAGTGAATTCCGTTCAAATTTACATATATTAGTGAGATCTAAAATACCCAAGGAAAActacataatattaataaacaatttttgCCTCTTCCAGTGAAAAAACACCAGCCTAAAAACTGACCAGGCTATCAACATGATTTCCCATCCTGTTTAACTGATTTTAGAGAGGGTTGACAACTTTATTTGGCTGGTAAGCTGTGAGAGCTGGTGTGAGACCAGCTAAACCATACGAACACAAGCCTCATTCAAATGCTCAATTGTACCAAACACATACATGCTGCAAAACTATTTTCATTCAACAATCCAACCTTCTGGCTGTAAGAAAcacttaaaaagaaaaagaaagaacacTGTAGTCAATAACAACTGTTTTTACAGATCAGCAGAGAAACAAATATGGTATCACACAAATCTGAGGAAAATTATATGGAATCAGCATGTACtttgcagttttaaaacaaacaactGTATCTGATTGCAACtatctgcagtttaaaaaaaaagcttatagtGAGGTGTTGAACCGAGCTGATTGACATTACTCATGGCTCGAACACGAGAGATGTCAGTTGAAACAAAGGAGAAGTTTGTCAAACTTTTCAAAGGTAAATATTCACTGAATGTTGCAAAAGATGTTAGTTGTTTGCAGTTAGTTGTGTCTATATCTGGACTAAAATCAAATGGGAAGGTTGTAGAAGTGAAGAATACTGGTAGACCAAGGAAGACGTCAAAGCATCAAAAAGCAATATGCATTCAAAACAGAAAATGCACAACAAAGCAAATGAGGAACAAATGGGCAGAAAGTGAAAAAAGTGTGACCGGACTGTAAGAAATCACCTGAAAGAACTGGGATTTACATAAAGAATAACCATCAGTAACATGTAAACAGAAAAGAACAAGGTTCCAGTGGGCTAAAGAAAGGCAATCTTGGACTGCGGATGACTGGATGGGAGTGATATTCAGTAATGAATCACAAATCTGCATTGGGCAGGGTGATGATGCTGGAACTTTTGTCAGGTGCCATTCCAATGAAATTTATGACAACTGCCTGAAGAAAACATGCAAATTTCCTCAATCATTAGTGATATGGGGTTGTACCGTATGTCAGGTGAGATGACAGTCACTGCATCCTTTATAAATGCACAAGTTCATATTAAGATTTTGGACACTTTTCTTATTCCATCAATTGAAAGGATGGTTGGTGATGAAGACATACTTTTTAGGTTGATAATGCATCGTGCCATAAGGCAAAATCTGTGAAAACTTTCCTACAGGAAAGACATAAAATGTCAATGGGATGACCTGCAAATAGTCTAGACCTCAATCCAACTGAATATCTGTAGTGGAAATTAAAGAAAATAGTCCATAAGGATCCAACTTGCAAAGCTGATCTAGCAACTGCAATAAGATAAAGTTGGAGACAGATTGATGAAATACTGTTTAATCCACGCCTCAGTTAATTCAATAAGTAAAAAGTCAGAGGGGGTGCAACAAAGCACTAGTGGTGTTTTTATTTGGTGATTCCATATCATTTTCCTCAGATTTGTGTGATTCCATATTTTTTTTCCTATGTTTGATATGTTAAAACAGTTGTTATTGACTACAGTGTTCTTTCTTTTTAGTGTTTTGTATACAGCCAGAAGGTTGGATTGTTGACTGAAAATAGTTTTGTggcatgtatgtgtttgtttgttttgtctacacaattaaagattttaattaaCAGAGTGGTGATTCTATACTTTTTGCCAGGGGTTGATGGTTTTAAACTGCCTAGCTAATATGGTCATGCTGGTTTTGACTTGATTGTACCTGGTCTCAACTTGCCTGCCTGCAACCAACTAAAAATGTTAagaaagcaagcaaacaaacgaAAAAACTGCTATAAAACCATGACTAGATTGACTATATGACCTGTTTTCCAGCAGGGTCATCATGAAGAAGCCACATCAGTTCACTGAAGGAAATTATTTCATtaaacccttttcacatttccagttTTCTTGGCagtggaagtcatcatagttgggtgaACTTAGAGAGCAGTCAATAGGGTTTTTTCTACGTTCcaatttactaaaataacctttcaattattatatattttttttgtaacttgTTACAAACATGATATATAGTAGctttatgtgttttaaaaaatctaagtattaaaaacttttaaggattttAGAAGCTGATAACTGATAAATGCGTAATCAccatcttgtgaaaagggtccagtAACGAGAAAATCTATGTCGCGAGGGATGACAAATGTTGATATtccctatatatattttttttactttgaatctTTCATACTTTGACACTATAAgctaaaaaaaagcttattttaactTTGCTGCacatcatttgcatatttaggAGCTCGTTCTGCCACACAGTACAGCCAATTGTGACTTTTTAGGTTTaggatttttttagtttttctgagAACTGAGTGACATAACCCGGTTTTAGTGATATTTAAGACAGCAGGAAAAAGTCAGAACATCAGTCGTCAGAATTGACACAGTATAGACACATTAGAAGTGGCTATTTCCTTTTCGGTGACAGATACAAACTTTGTTGTGATTAACTGAccaagaaatatttatttaaaaaaaaaacgatataGTTTTAGTAATAATTTGGATCAGTTTTCATTATTATATACTACTATAATTTTGTTGTGCTtttgttgttaacattttattttacaacagtgtttattataaatacaatGTTTATATAATAGTATCTTTTTCCTTTACTCCAGTTATCTTAATATtatgtgaatataaaaatatagctttttttgtatttttacatgttgtattaaatgtatggattgattgatttattgcagATTATATTTATTGCAAGTaacacaaattattttaattgattagATTTTTATGGACATTTTGTGGTTGAGGTTGACCTGATAGCTAGAAAGGATGTTGTGATGAACTCCAGCAGGAATCATATCATTCCCAATATAGATGGCTGAGTAAACTTCACTTGGCATTGCTGAATGTTCTATCTTGTGTTTGTTAAAACCTCTCtaagtctgtgtttgtttgtgctcgATCTGTTCACAGAGGCCTGTGCTGTGGGGAAGAACGAAAACCCTCTCTTTTCTCCTCAGAATAAATCTTTGTCCTTAATTTCATCCTTATCATATCCAGTGCTGCTGTGTTTGATCTGCTTTGATCCTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072918 False 264 lncRNA 0.41 3 18911697 18914987
TCONS_00075080 True 3262 lncRNA 0.34 1 18911726 18914987

Neighbor

gene id symbol gene type direction distance location
XLOC_037049 gtf2f2b coding upstream 6380 18829360 ~ 18905317 (+)
XLOC_037048 serp2 coding upstream 190281 18716485 ~ 18721416 (+)
XLOC_037047 BX957328.1 coding upstream 303428 18605460 ~ 18608269 (+)
XLOC_037046 lacc1 coding upstream 323943 18572970 ~ 18587754 (+)
XLOC_037045 BX004817.2 coding upstream 561214 18350367 ~ 18350483 (+)
XLOC_037051 chmp2ba coding downstream 124621 19039608 ~ 19057957 (+)
XLOC_037052 crfb1 coding downstream 180036 19095023 ~ 19133001 (+)
XLOC_037053 NA coding downstream 313832 19228819 ~ 19229066 (+)
XLOC_037054 htr1fa coding downstream 333137 19248124 ~ 19308435 (+)
XLOC_037055 AL935292.2 coding downstream 411112 19326099 ~ 19383526 (+)
XLOC_037044 BX004817.1 non-coding upstream 595177 18316403 ~ 18316520 (+)
XLOC_037042 BX248332.1 non-coding upstream 747670 18163629 ~ 18164027 (+)
XLOC_037038 AL929161.1 non-coding upstream 1248632 17662950 ~ 17663065 (+)
XLOC_037062 NA non-coding downstream 880167 19795154 ~ 20053449 (+)
XLOC_037063 NA non-coding downstream 883264 19798251 ~ 19810178 (+)
XLOC_037064 CR933734.1 non-coding downstream 906470 19821457 ~ 19823614 (+)
XLOC_037065 CR933734.2 non-coding downstream 922396 19837383 ~ 19841055 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G356966 NA non-coding NC_047618.1 CM018564.1 17872139 ~ 17873011 (+)