XLOC_037057 (pde9a)


Basic Information

Item Value
gene id XLOC_037057
gene name pde9a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19421841 ~ 19477248 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072930
ATGGGCAGCGCGTCTTCGGCGTATCGGATGATTTACCTGGAGGTGGACGGACGCGTTCAGAAGGTGGTTTTCAGCCGCTTCTGCAGCCCATGTGATATAAAGGAGCTGTTCTGCACGGCCACAGGGCTCTCCAGGAACACAAGCATTTCCCTTCTGGACTCAACAGGAGCGATGGTTTCTATCGACCCAACAATGCCAAACAACACAGAGAGGTCACCGTACAAAGTGGTGCCCGTAACTGGCAGCCAACTTGCAGATAAAGAGGAGCTGTTCCAGAATGTTCTGACACAGGTGGCGGAGCAGTTCTCCAGGGCGTTTAAAATCAACGAACTGAAAACTGAGGTGACGAATCGCCTAGCCATGCTGGAGAAGAGAGTGGAGTTGGAAGGGATGAAGGTGGTGGAGATAGAGAAATGTCGCAGTGACATCAAGAAGCTGCGGGAGGAGATGGCTTCCAGAAACAACAGTAGTTTCCTAGAAGACAACAAGAAGTTAACTCCTCGCAGAGATGTGCCTTCATACCCAAAGTACCACCTGTCGCAGGACACAGTAGAGGCTCTGAAGCAGCCGCTCTTCGATGTGTGGCAGTGGGAGTCTAATGAGATGCTGAGTTGCCTGGAGCACATGTATCATGATCTTGGTCTGGTGAAGGACTTTAATATTAACCCCATCACACTTAAGAGATGGCTGCTTTGCATCCATGACAATTACAGGAACAACCCTTTTCACAATTTCCGCCACTGTTTCTGCGTCACTCAGATGATGTACAGCATGATCTACCTCTGCGGCCTACAGGAAAAGTTCACGCAAGTGGATATTTTGATTTTGATGACCGCGGCGGTGTGTCATGATCTGGACCATCCTGGGTACAACAACACCTATCAGATAAACGCGCGCACAGAGCTGGCTGTGAGGTACAATGACATCTCTCCTCTGGAGAACCATCACTGTGCTGTGGCCTTCCAGATCTTCTCTCAGCCAGACTGCAACATCTTCGCCAGCTTCGATCCAGAAGCCTTCAAACAGATTCGTCAGGGAACCATCACCTTGATACTGGCAACAGACATGGCCCGACATGGAGAGATCATGGACTCTTTCAAACAGAAAGTGGACAGCTTTGACTACAATAATGAGGAGCATGTTACTTGTCTGAAGATGGTGCTGATCAAGTGTTGCGACATATCTAATGAGGTTCGGCCCATGGAAGTGGCAGAGCCCTGGGTCGACTGTCTCCTGGAGGAGTACTTCATGCAGAGTGACAGAGAAAAGGCAGAAGGTTTACCTGTGGCTCCTTTCATGGACCGAGAGAAAGTGACCAAACCCACGGCTCAGATCGGCTTCATCAAGTTTGTCCTGATCCCCATGTTCGAGACAGTGATGAAGGTCAGACCTGAACGCACAAAACATGAGTCCTTCAGGGAGAAATCAAACACTGGTTTGGGTCAAGCCCAGCAGGCCAAGCTGTTTGTTCTCTGTGTTCCAGTTGTTTCCTCAGATTGA
>TCONS_00072931
ATGGGCAGCGCGTCTTCGGCGTATCGGATGATTTACCTGGAGGTGGACGGACGCGTTCAGAAGGTGGTTTTCAGCCGCTTCTGCAGCCCATGTGATATAAAGGAGCTGTTCTGCACGGCCACAGGGCTCTCCAGGAACACAAGCATTTCCCTTCTGGACTCAACAGGAGCGATGGTTTCTATCGACCCAACAATGCCAAACAACACAGAGAGGTCACCGTACAAAGTGGTGCCCGTAACTGGCAGCCAACTTGCAGATAAAGAGGAGCTGTTCCAGAATGTTCTGACACAGGTGGCGGAGCAGTTCTCCAGGGCGTTTAAAATCAACGAACTGAAAACTGAGGTGACGAATCGCCTAGCCATGCTGGAGAAGAGAGTGGAGTTGGAAGGGATGAAGGTGGTGGAGATAGAGAAATGTCGCAGTGACATCAAGAAGCTGCGGGAGGAGATGGCTTCCAGAAACAACAGTAGTTTCCTAGAAGACAACAAGAAGTTAACTCCTCGCAGAGATGTGCCTTCATACCCAAAGTACCACCTGTCGCAGGACACAGTAGAGGCTCTGAAGCAGCCGCTCTTCGATGTGTGGCAGTGGGAGTCTAATGAGATGCTGAGTTGCCTGGAGCACATGTATCATGATCTTGGTCTGGTGAAGGACTTTAATATTAACCCCATCACACTTAAGAGATGGCTGCTTTGCATCCATGACAATTACAGGAACAACCCTTTTCACAATTTCCGCCACTGTTTCTGCGTCACTCAGATGATGTACAGCATGATCTACCTCTGCGGCCTACAGGAAAAGTTCACGCAAGTGGATATTTTGATTTTGATGACCGCGGCGGTGTGTCATGATCTGGACCATCCTGGGTACAACAACACCTATCAGATAAACGCGCGCACAGAGCTGGCTGTGAGGTACAATGACATCTCTCCTCTGGAGAACCATCACTGTGCTGTGGCCTTCCAGATCTTCTCTCAGCCAGACTGCAACATCTTCGCCAGCTTCGATCCAGAAGCCTTCAAACAGATTCGTCAGGGAACCATCACCTTGATACTGGCAACAGACATGGCCCGACATGGAGAGATCATGGACTCTTTCAAACAGAAAGTGGACAGCTTTGACTACAATAATGAGGAGCATGTTACTTGTCTGAAGATGGTGCTGATCAAGTGTTGCGACATATCTAATGAGGTTCGGCCCATGGAAGTGGCAGAGCCCTGGGTCGACTGTCTCCTGGAGGAGTACTTCATGCAGAGTGACAGAGAAAAGGCAGAAGGTTTACCTGTGGCTCCTTTCATGGACCGAGAGAAAGTGACCAAACCCACGGCTCAGATCGGCTTCATCAAGTTTGTCCTGATCCCCATGTTCGAGACAGTGATGAAGTTGTTTCCTCAGATTGAGGAGGTAATGGTGCAGCCTTTGCGAGAGTCCCGGGACAAATACGAGGAGCTCAAACAGATAGACGATGCCATGAACGAGatgcagaaaaagaaaacagaaaatgtaaCAATGGGAGGAAAAAAGAAATGAGTAAGCTGGATTCGCCATCAGAGTAAGTGGGAAATGAGTGTCTCTCCAAAGCATCATTCAGGGAATTGTTGAACCATGTACAGCTCAGCTATGAaccatttgtgttgtttttatttggttttgtaaAAGTATAAACATTATACAGGATGTACAGATTTTTAGTCACTTTTATTCAGAAAACAATAAAGTCTAACTTTATG
>TCONS_00072932
aTCTGAGCACCCCTGCTGTCGAGGCTGTATATTGTGTCCTCTTCTTCAATCCTACCTCTAAACTTCTTTAACACTTCTGCGCTTGTGTGTTTCTCAGGAAAAGTTCACGCAAGTGGATATTTTGATTTTGATGACCGCGGCGGTGTGTCATGATCTGGACCATCCTGGGTACAACAACACCTATCAGATAAACGCGCGCACAGAGCTGGCTGTGAGGTACAATGACATCTCTCCTCTGGAGAACCATCACTGTGCTGTGGCCTTCCAGATCTTCTCTCAGCCAGACTGCAACATCTTCGCCAGCTTCGATCCAGAAGCCTTCAAACAGATTCGTCAGGGAACCATCACCTTGATACTGGCAACAGACATGGCCCGACATGGAGAGATCATGGACTCTTTCAAACAGAAAGTGGACAGCTTTGACTACAATAATGAGGAGCATGTTACTTGTCTGAAGATGGTGCTGATCAAGTGTTGCGACATATCTAATGAGGTTCGGCCCATGGAAGTGGCAGAGCCCTGGGTCGACTGTCTCCTGGAGGAGTACTTCATGCAGAGTGACAGAGAAAAGGCAGAAGGTTTACCTGTGGCTCCTTTCATGGACCGAGAGAAAGTGACCAAACCCACGGCTCAGATCGGCTTCATCAAGTTTGTCCTGATCCCCATGTTCGAGACAGTGATGAAGTTGTTTCCTCAGATTGAGGAGGTAATGGTGCAGCCTTTGCGAGAGTCCCGGGACAAATACGAGGAGCTCAAACAGATAGACGATGCCATGAACGAGGTCAGCAGACAG

Function

symbol description
pde9a Predicted to enable 3',5'-cyclic-GMP phosphodiesterase activity. Predicted to be involved in cGMP catabolic process and cGMP-mediated signaling. Orthologous to human PDE9A (phosphodiesterase 9A).

GO:

id name namespace
GO:0046069 cGMP catabolic process biological_process
GO:0019934 cGMP-mediated signaling biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0047555 3',5'-cyclic-GMP phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130920-1 Predicted to enable 3',5'-cyclic-GMP phosphodiesterase activity. Predicted to be involved in cGMP catabolic process and cGMP-mediated signaling. Orthologous to human PDE9A (phosphodiesterase 9A).

Ensembl:

ensembl_id ENSDARG00000060280

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072930 False 1500 mRNA 0.50 16 19421841 19473249
TCONS_00072931 False 1730 mRNA 0.47 19 19421841 19477248
TCONS_00072932 True 793 lncRNA 0.49 6 19466365 19473340

Neighbor

gene id symbol gene type direction distance location
XLOC_037056 slc37a1 coding upstream 11798 19367459 ~ 19410043 (+)
XLOC_037055 AL935292.2 coding upstream 38315 19326099 ~ 19383526 (+)
XLOC_037054 htr1fa coding upstream 113406 19248124 ~ 19308435 (+)
XLOC_037053 NA coding upstream 192775 19228819 ~ 19229066 (+)
XLOC_037052 crfb1 coding upstream 288840 19095023 ~ 19133001 (+)
XLOC_037058 si:ch211-140m22.7 coding downstream 12056 19489304 ~ 19510927 (+)
XLOC_037059 ndufv3 coding downstream 41426 19518674 ~ 19528038 (+)
XLOC_037060 pknox1.1 coding downstream 52703 19529951 ~ 19550058 (+)
XLOC_037061 pdxka coding downstream 146115 19623363 ~ 19653458 (+)
XLOC_037062 NA coding downstream 317906 19795154 ~ 20053449 (+)
XLOC_037050 NA non-coding upstream 506854 18911697 ~ 18914987 (+)
XLOC_037047 BX957328.1 non-coding upstream 813572 18605460 ~ 18608269 (+)
XLOC_037045 BX004817.2 non-coding upstream 1071358 18350367 ~ 18350483 (+)
XLOC_037044 BX004817.1 non-coding upstream 1105321 18316403 ~ 18316520 (+)
XLOC_037063 NA non-coding downstream 321003 19798251 ~ 19810178 (+)
XLOC_037064 CR933734.1 non-coding downstream 344209 19821457 ~ 19823614 (+)
XLOC_037065 CR933734.2 non-coding downstream 360135 19837383 ~ 19841055 (+)
XLOC_037066 CR456628.2 non-coding downstream 909497 20386745 ~ 20392034 (+)

Expression


Co-expression Network