G1771648


Basic Information

Item Value
gene id G1771648
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 7866073 ~ 7868552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2028980
AGATTTATTCAAAACTCAATGATACAGCGTTTGGGAACTCTTGTCATATACATcaatctgtatatatatataacaaataCTCTGTAGGTGCCGTTTGTAGGTAGGTCAATAGGTAAGACATTTTGATCACAGGTGTGGGACAGGTCATATACAGCATTGGAAAGCACAGAGGACACAGTTGAACATCGCagtccccctgcctctctgttttcatttttttttatttttaccgcAGTCACAAAGCAGAACACAAAACATGAGGACAGTCCTATTCTTAGCTCAAATACTCATATAACAACTGTTTGTCTTCTTATTTTCTTCCATTTGCATCCACTATGTACAAAAGAGACACGTGTCCATTCTTTTTTTGTCCATGTCCACCTGTCTTGATGAATAAGTATCGCACATGGCTGCTCCCGCAAGACTAGGTTTCTCTTTCCGTTGACACTATCTGAACACGGAAATGGTAGATTTACACAATGGATGAGTTGTACTGTACTGGCACATCTATGGCAAGCATGATAACTAGGCCACACCATACAGTATGATGTCATACACACACTGGGGGTAGTAGGCCGGTAAGGGGGAGTACAGAAACAGAACTGTTCATATTGAACACATTTCAATGCTCTGCCACAGAGATTGTGCAAAAATGTATCCCAACAAACCACGCTCAATATCCAGTGTAAATTAAACTTTAGTGATACCagttcatgagagagagagagagagagagagagagagactaagttcACCCAAATCAGTTGTAAACATTTACATAcacagtgaaataaaataatttaaaaatcaCATACGTTATACAAAATAATTTACGGACCATAAACAAATCAtttttataaatatataaataacacAAACCAGTATATTCCATATATTGTAACAATAACAGCGGGGAGAGAGGAATCACAAAAATAGCTATTAGCGCACGGAAGAGCAAGGCAGGATATGTGGTAAAGGATATTGGTGTTGTTTGAAACAAACGTTTCCTACTTGGGACACAGAGACTGGACCTGCCAGGTTTGATGACACTGGCATTGAAGACTGTGAGCCTCTGCTTAGGGCCTGGAGTTTTTACTGGTCCTACAAGACGCCACAGTTGAGTTTTGAACACAGATTTGTGTCCTAGAACACAGAGGCTTGACTGTTTCATTTAATCCACAGAACTCTAATTTCGTCGTCCTTTGAGTAGTATGACCAATGGTTACCTTCACTAATTCATTGGGGTTTCTAAAAACAGAACGCTAAAGACAACCCCCTGGTTTTTTAATATATCTTTCTGTTTTTTAGCTGTTGAAGGAATATTGTAGTGCATCTCGTAATGGGGGAAAAAGTCTGAGGCTAAGAGTTGAAATCGTCACCCTGGGAATGAACCATACATGCTGTTTAGAAAGAGTAGAACAGGCATCTCATATCCTATACAATATCCTATTAATACCTATATACTAAAAATACAACCGATGATGCTGTATTTGCTTGGCATGCTGTGTCCTGTGTGTAAAATACAGCAGGGGGTACTGAAACAGTGGTAAGAGCCATAAGACAGTCCATAGTAATACCAAAAAGATATAATGAATTCATTGGATGTCATAAGGAAATGTCAAAGGTCACCATGACATTTGCATGCTACTGTTATATATGTGGGAACAGGAGTTAAGATAGAGAATATGGTCCATAGAATACACTCCTTCCTGAATCACATCTGAATATCAGGGTTCCCAACACGTCAGGGCTAAACATAGGAAGGGGGTACATTCAAGGAAAAATGAACAGACACTACCCGACACAAGCTACCTCATAACTACGGAAAGAGAGGAGGCACAAAAAAACAGGGGAGAGTGGTCAAGGCAACAGGGAGATTTTCACACAAAGAGAGGACAATCCAAAACAGgaacaacaacaaataaaaaaaatatataaataaaaagacAATACAAttaaataatttaaataaaataaataaataaataaaacccttAAAAATCATTTTGTTTTGTTGTAGACCACAGGTTAAAAGCTGTACTGTGCTTTATAGCGCGCGCGGTAAGGTACGACCACGGTAGTTTTGGGGGTTTAGTTCTGGTGAGAGATGCAGCTCTTACGCGACACTGAGCCCATCCTGTAACTGTGGGTCGTCCACACAGAGTCGTAGTCAGAGTCCTCCGACAGGTCTGAGCCAGTCACGTCAGGCCGTGACACGCTGCTACGGTGGCCTGGAGAGTCCACACAGGACCGGTCCAAGTCCCCCAGCACGTGGTTGTGCATCAAGTCAGTGCCCTGCCAG

Function

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 7 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2028980 True 2302 lncRNA 0.40 3 7866073 7868552
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118943576 NA coding upstream 349706 7515353 ~ 7516367 (+)
LOC110501295 LOC106582015 coding upstream 377773 7480701 ~ 7488300 (+)
LOC110501294 LOC106582012 coding upstream 393472 7453053 ~ 7472601 (+)
LOC110501293 LOC106582013 coding upstream 418346 7425287 ~ 7447727 (+)
LOC118936580 NA coding upstream 448634 7393639 ~ 7417439 (+)
aff3 aff3 coding downstream 43614 7912166 ~ 7954489 (+)
rev1 rev1 coding downstream 87818 7956370 ~ 7978486 (+)
LOC110501308 txndc9 coding downstream 120263 7988815 ~ 7992218 (+)
mitd1 mitd1 coding downstream 124822 7993374 ~ 8006327 (+)
cracdla LOC106582029 coding downstream 148360 8016912 ~ 8025026 (+)
G1771592 NA non-coding upstream 2815 7859886 ~ 7863258 (+)
G1771589 NA non-coding upstream 78754 7787099 ~ 7787319 (+)
G1771584 NA non-coding upstream 87617 7775742 ~ 7778456 (+)
G1771574 NA non-coding upstream 118467 7747314 ~ 7747606 (+)
G1771573 NA non-coding upstream 119951 7745806 ~ 7746122 (+)
G1771651 LOC106582025 non-coding downstream 5131 7873683 ~ 7883054 (+)
G1771660 NA non-coding downstream 22794 7891346 ~ 7891744 (+)
G1771658 NA non-coding downstream 53261 7921813 ~ 7947715 (+)
G1771750 NA non-coding downstream 224647 8093199 ~ 8093423 (+)
G1771754 NA non-coding downstream 230771 8099323 ~ 8099767 (+)
G1771580 NA other upstream 98565 7767065 ~ 7767508 (+)
G1771131 LOC106581993 other upstream 540053 7323635 ~ 7326020 (+)
G1770757 NA other upstream 583331 7234574 ~ 7282742 (+)
G1769469 NA other upstream 1804334 6061295 ~ 6061739 (+)
LOC110501322 LOC106581983 other downstream 489742 8358225 ~ 8410070 (+)
G1772554 gpr161 other downstream 1187153 9055705 ~ 9056402 (+)
G1772556 LOC106567841 other downstream 1237463 9106015 ~ 9122457 (+)
LOC110501352 gpr34 other downstream 1515808 9384301 ~ 9387652 (+)
G1775959 NA other downstream 3643413 11511965 ~ 11516413 (+)

Expression

G1771648 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 6.
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G1771648 Expression in each Bioproject

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G1771648 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network