XLOC_037059 (ndufv3)


Basic Information

Item Value
gene id XLOC_037059
gene name ndufv3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19518674 ~ 19528038 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072944
GGACAATAATAACAGCAGAACAAAATGGCCATGTCCCTGCTCAGGTTAGGTCGACTTGGATCTGTCAAGTGTCTCTTGCGTGGAGGCTGGAGCCCACCAAAAACCCAGTTTGCTGCAGCTCTGTGCACTAAAGCGGACGTCCCACCGAAAACACCGAAAAAGGGAAAGGCTTCAAGTAAGACCATAGAGGCAGATGAGAGGGCATCTCTTCTAGCCTACAAGCCTGCAGTTGCCTTCCCTTCTAAACTGGTTGCCACAGGATTTCTTTCCAAAGATGTAGCATTAGGTGAATCTGAAACTGCTAAGGCTGCTTTCACAACTCCTGCAAATGAGAAGACAACTGACAGTCCTCCAGCCGATACGGCAGCAGCTGATGTTGCTGTAGAAGAGCCAAAGATCACTGAAATCCCAACTACTGGTAAAGCGCCTACAGAAGGTGAAAGAAGTAAGGCCTTGGATCCTGACTCAGAAGCTAAGAAAGATGATGAAGATACCTCGTCCTCATCCTCATCCTCCAGTGACTCTGATTCAGACTCTGATGATGAGGAACCTAAGACTGAACCACCACAACAGACTGGTGAGAAAGCAGAGAAGAAGGATTCTAGTGTGGCAAATGAACAAGTTGATCTTGCAGACAAGAAAGCAAAGCCTGTATCTGCCTCGTTTAAAGAAGAATGTGTTGAAACTGTGAAATCGACACCAGAAGTGCTTGCACCAAATATCCCAGCAACAGAAGTTAAAACTGTTCCTACAGAGGAATCAATAATCAAAGCAGAAGAGGCTGCCAGTGTTGTCCCAGAAGTCTCTACAAAAGCTAGTCATTTAGCTAGTCCTCCTGAGGCTCCTGGAGATGTTGCACCTAAATCTGAGGATCTCTCGGCCAAAGCTGAGGCAGGAGCACCGTCAGCCCCTTCAGAAGAGCTGGTAGACCCTGCACCTGCAGCTGCTGATGCTGTCGAGGCACTGGCTCAGACAGATGTTGTGGAAACACCTGAGGAACAAGCCCCAGAGAAAGCCCCAGAGCCGGAGCCTGAACCCTTCGACAACACCACCTACAAGAACCTGCAGCACCATAACTACAACATGTACACCTTCACTGATATGGATGTAGAGATGGCCAAATACCGTCTGCCCCAACCTTCCTCTGGCCGACCCTCACCTCAACACTGAGCCTTTACTGCATGGCCTGTGTACATTTTGTCCACAACCCTGTTTATTCATCATGTTCCTTTGTTCTTACAATGAATTGCTGACAAATTTCAAGCTTTATGGTAAAACTCTGCAAATAGTGTATTAAAACAGATGATCTAACTTAA
>TCONS_00072943
GGACAATAATAACAGCAGAACAAAATGGCCATGTCCCTGCTCAGGTTAGGTCGACTTGGATCTGTCAAGTGTCTCTTGCGTGGAGGCTGGAGCCCACCAAAAACCCAGTTTGCTGCAGCTCTGTGCACTAAAGCGGACGTCCCACCGAAAACACCGAAAAAGGGAAAGGCTTCAAGTAAGAAACAAGCCCCAGAGAAAGCCCCAGAGCCGGAGCCTGAACCCTTCGACAACACCACCTACAAGAACCTGCAGCACCATAACTACAACATGTACACCTTCACTGATATGGATGTAGAGATGGCCAAATACCGTCTGCCCCAACCTTCCTCTGGCCGACCCTCACCTCAACACTGAGCCTTTACTGCATGGCCTGTGTACATTTTGTCCACAACCCTGTTTATTCATCATGTTCCTTTGTTCTTACAATGAATTGCTGACAAATTTCAAGCTTTATGGTAAAACTCTGCAAATAGTGTATTAAAACAGATGATCTAACTTAA

Function

symbol description
ndufv3 Predicted to be involved in mitochondrial ATP synthesis coupled electron transport. Predicted to be located in membrane and mitochondrion. Predicted to be part of mitochondrial respiratory chain complex I. Orthologous to human NDUFV3 (NADH:ubiquinone oxidoreductase subunit V3).

GO:

id name namespace
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-030131-6500 Predicted to be involved in mitochondrial ATP synthesis coupled electron transport. Predicted to be located in membrane and mitochondrion. Predicted to be part of mitochondrial respiratory chain complex I. Orthologous to human NDUFV3 (NADH:ubiquinone oxidoreductase subunit V3).

Ensembl:

ensembl_id ENSDARG00000090389

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072944 False 1316 mRNA 0.47 5 19518674 19528038
TCONS_00072943 True 500 mRNA 0.47 3 19518674 19528038

Neighbor

gene id symbol gene type direction distance location
XLOC_037058 si:ch211-140m22.7 coding upstream 7747 19489304 ~ 19510927 (+)
XLOC_037057 pde9a coding upstream 41426 19421841 ~ 19477248 (+)
XLOC_037056 slc37a1 coding upstream 108631 19367459 ~ 19410043 (+)
XLOC_037055 AL935292.2 coding upstream 135148 19326099 ~ 19383526 (+)
XLOC_037054 htr1fa coding upstream 210239 19248124 ~ 19308435 (+)
XLOC_037060 pknox1.1 coding downstream 1913 19529951 ~ 19550058 (+)
XLOC_037061 pdxka coding downstream 95325 19623363 ~ 19653458 (+)
XLOC_037062 NA coding downstream 267116 19795154 ~ 20053449 (+)
XLOC_037063 NA coding downstream 270213 19798251 ~ 19810178 (+)
XLOC_037064 CR933734.1 coding downstream 293419 19821457 ~ 19823614 (+)
XLOC_037053 NA non-coding upstream 289608 19228819 ~ 19229066 (+)
XLOC_037050 NA non-coding upstream 603687 18911697 ~ 18914987 (+)
XLOC_037047 BX957328.1 non-coding upstream 910405 18605460 ~ 18608269 (+)
XLOC_037045 BX004817.2 non-coding upstream 1168191 18350367 ~ 18350483 (+)
XLOC_037044 BX004817.1 non-coding upstream 1202154 18316403 ~ 18316520 (+)
XLOC_037065 CR933734.2 non-coding downstream 309345 19837383 ~ 19841055 (+)
XLOC_037066 CR456628.2 non-coding downstream 858707 20386745 ~ 20392034 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G189784 NA non-coding NC_053129.1 CM020926.1 35432675 ~ 35509997 (+)