XLOC_037060 (pknox1.1)


Basic Information

Item Value
gene id XLOC_037060
gene name pknox1.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19529951 ~ 19550058 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072945
AGTGTGACGAAGATTGGCACCCAGGTCCTCTCCTGCTGCCTGTCCATATAATGTCCCAGTGTTGGCAGTGGCCATTTTGAATATGATGGCTGCCCAGTCTGTGTCCATAGACAAATACCCAGAGGGAGACCAGCAGATGCAGGTAATGGAGCAGTCAGAGAATGACCTTAAAAAGGGCTTTTCCAATGGAAACACAGGAAACACAAGCAGCCCTGTATCCAATGAACCACAAACACAAATGGATATCGACAAAGCCTGTATATATAGACATCCTCTTTTCCCTCTCCTGGCTCTCCTGTTTGAGAAGTGCGAACAGTCCACTCTGGGGTCCGACTGTGTCACGTCTGCCAGTTTCGATGTTGACATTGAGAACTTTGTACGCAGTCAAGAGAAAGACGGCAAAGCCTTCTTTAGTGAAGACCCTGACCTCGACAACTTGATGGTCAAGGCCATCCAGGTGCTGAGGATTCATCTGTTAGAGCTGGAGAAAGTCAGTGACCTGTGCAAGGATTTCTGCAGCCGTTATATTTCATGCCTTAAGGCCAAGATGAACAGCGAGACACTGCTGAGTGGAGATCCAGGCAGCCCGTACTCTCCGGTCCATGACCAGttGTCCAACCCTTTCTCAGGTCCCCTCAGTCCCCAGAGTCTTCTGATACCTTCGTCTGGTCTTCAACAAGGCAGTGTTACAGTGACCACAGTCAATTCATCACAAGTGGCCACAGGTAACACCGTATATCAGCCAGTGACAGTGGTCACACCACAGGGACAAGTGGTGACACAGGCCATCTCACCTGGAGCACTACACATCCAGAACTCACAGCTCCAACTTCAGCTCAATCAGGACTTGAGTTTCTTCGGGGGAGACGACAGCTCACCTAAAAACAAACGTGGCGTTCTTCCCAAACAGGCAACCAATGTCATGCGCTCCTGGCTCTTTCAGCACATTGCGCACCCGTATCCCACTGAGGAAGAGAAAAAGCAAATTGCAACTCAAACAAACCTGACTTTACTTCAAGTCAACAACTGGTTTATTAATGCTCGAAGACGAATACTGCAGCCAATGCTGGATGCCAACTCAACAGAGGCATCTAAAAGCAAGAAAAAGGTGGCTCAGAGTCGCCCGCTGCACCGCTTCTGGTCCGACTCCATCGCCTCTACAGGAAGCCAGCAGCAGCTCACAATGCCAGACGGGAGTTTGGTTACTGTGGGAATGAATGTTGACGGCTTCCAGGCGCTTTCTTCAGATGGAGCCACTCTCGCCATGCAGCAGGTCTTGATGGGAAATCACAGCGAGGATGAGACTGATGAAAGCGGCAATGAAGACGACACAGATATGTCAACCGCCAACATGCCCGGTCTGGGTTTAGACGTCAGCGACTAAGACGCATGGATTGCAGGTCACACACTGCATGCTTACATTTACATTGGAAAACTTGCAGATGATGCTTGTTGCAAGAGATCCGCTCCCTATGTAGATTTTCAGCAAAGCTGATACTTGTGCACTACAAAAAGAATTAAGTACTGTATGTTGACCTTTATGTTACACAAAACACAAGTGAACAGTTTACAGAGAGCACAACGTTACTGAAAGCAGCAAACCGAGGAGTGTCATTTTTACCACAAAGAGGTTTGTGCACTTTTATACAGATACACTTGGAGAAGACTGCAGAAATGGAGGACGGAGGAACCTTTTGAAACTCCTTTAGTGAATGTTTGGTCAATTTTGTTTTCTGTATTAACTCATTTGGATGCCAAGAGTGTGTCGTCGTGCTGGTTTTATTCCCACTGCATGTTTGTGTTCTCTTCAGTATGCTCACGCTTGTAGAGACTCCAAGACGGAGTTTGAGAAAAgagattatttttatatataaacgttgtataaaagtgttgtttttcttttgctgttttttttagtgttttataGGGAATATTTATGTACAGAAACGATACTATCTGCCCTGTTTTCAGGGGATGagtttttcttcttgtttttagaaaaacaaacaaaaaaaagatctTGGAGTTAAACCATTGTTTCAATTTGTGAATTGGTTTTAACACTCGCGTACAAAATGCCTTACACGTCCTTTTGTAAAACTCTTTTGCTGATAAGCACAGAAATCCGGATGCATTGATGAAATTGAGTAATATCTGTTCAAGTCTCTTCCAGTAATCTTTCCTTCGTTTCAGAGGGATCTCTGTTTTTGCTCTGTAGGCTGATGTAGTTTGATCTCACATGTGCAAAGCTTATCAATCAGATTCATGAAAGAAgctttggaaatgaaaatggCATAAAATGTCCATTATTGAAGTCAAATAAAGGTCAAGTCTGAA

Function

symbol description
pknox1.1 Enables sequence-specific DNA binding activity. Acts upstream of or within hindbrain development; neural crest cell differentiation; and regulation of histone modification. Located in cytoplasm and nucleus. Is expressed in several structures, including brain; germ ring; otic vesicle; ovary; and post-vent region. Orthologous to human PKNOX1 (PBX/knotted 1 homeobox 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001525 angiogenesis biological_process
GO:0035066 positive regulation of histone acetylation biological_process
GO:0031060 regulation of histone methylation biological_process
GO:0031061 negative regulation of histone methylation biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020122-5 Enables sequence-specific DNA binding activity. Acts upstream of or within hindbrain development; neural crest cell differentiation; and regulation of histone modification. Located in cytoplasm and nucleus. Is expressed in several structures, including brain; germ ring; otic vesicle; ovary; and post-vent region. Orthologous to human PKNOX1 (PBX/knotted 1 homeobox 1).

Ensembl:

ensembl_id ENSDARG00000018765

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072945 True 2337 mRNA 0.45 11 19529951 19550058

Neighbor

gene id symbol gene type direction distance location
XLOC_037059 ndufv3 coding upstream 1913 19518674 ~ 19528038 (+)
XLOC_037058 si:ch211-140m22.7 coding upstream 19024 19489304 ~ 19510927 (+)
XLOC_037057 pde9a coding upstream 52703 19421841 ~ 19477248 (+)
XLOC_037056 slc37a1 coding upstream 119908 19367459 ~ 19410043 (+)
XLOC_037055 AL935292.2 coding upstream 146425 19326099 ~ 19383526 (+)
XLOC_037061 pdxka coding downstream 73305 19623363 ~ 19653458 (+)
XLOC_037062 NA coding downstream 245096 19795154 ~ 20053449 (+)
XLOC_037063 NA coding downstream 248193 19798251 ~ 19810178 (+)
XLOC_037064 CR933734.1 coding downstream 271399 19821457 ~ 19823614 (+)
XLOC_037065 CR933734.2 coding downstream 287325 19837383 ~ 19841055 (+)
XLOC_037053 NA non-coding upstream 300885 19228819 ~ 19229066 (+)
XLOC_037050 NA non-coding upstream 614964 18911697 ~ 18914987 (+)
XLOC_037047 BX957328.1 non-coding upstream 921682 18605460 ~ 18608269 (+)
XLOC_037045 BX004817.2 non-coding upstream 1179468 18350367 ~ 18350483 (+)
XLOC_037044 BX004817.1 non-coding upstream 1213431 18316403 ~ 18316520 (+)
XLOC_037066 CR456628.2 non-coding downstream 836687 20386745 ~ 20392034 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000080_03187019_03196643 PKNOX1.1 coding CI01000080 null 3186491 ~ 3196643 (-)