XLOC_037061 (pdxka)


Basic Information

Item Value
gene id XLOC_037061
gene name pdxka
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19623363 ~ 19653458 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072946
TTGACGCGATTGGCCAGTTCTTGTAAACACACTGAAGCAGTTAGGTGTCTTCGGCAAATGCCTGAACCCCCAAGAAAACTTATCTAAGCCCCGTCCATTCATCACGTAGGGAGAGCTGCTGCTTTCATGTCTGACATTTCTTAACATCAGCAAAAGCAATGGACTGCAGAGTTCTCTCAGTTCAGAGTCATGTTGTGAGAGGCTATGTTGGAAACAAATCTGCTACTTTTCCTTTGCAGGTGCTGGGCTTTGAAGTGGACACTATAAACTCTGTGCAGTTCTCCAATCATACAGGTTATGAGCACTGGAAAGGGCAGGTGTTGACTGCGGATGAACTCAACGTTCTCTACGAGGGAATCAAGCTTAACGATGTGAACCATTACGACTATGTGCTCACAGgaTACACTAGAGATTATTCCTTTTTGGATATGGTTGTAGACATTGTCCAGGAGCTGAAGAGAGCAAATCCGAGCCTGGTTTATGTGTGTGATCCGGTGCTAGGTGATAATGGGGCCATGTACGTTCCTGAGAACCTGCTGCCCATCTACCGAGACAGAGTTGTTCCTGCTGCAGACATAATCACTCCCAATCAGTTTGAAGCTGAACTCCTCTCTGGGAGAAAAATACATTCAGAAAAAGATGCTGTTGAAGTGATGAACCTTCTTCATTCAATGGGTCCAGACACAGTGGTAATCACCAGCTCTGACCTGCCCTCTCCTCTGGGCGATCAGTATCTGGT
>TCONS_00072947
GGTGTCTTCGGCAAATGCCTGAACCCCCAAGAAAACTTATCTAAGCCCCGTCCATTCATCACGTAGGGAGAGCTGCTGCTTTCATGTCTGACATTTCTTAAGTTTgtacatattttactttttacgCTTTTAAACGTTTAAACTCGTCTTTTTGGCTGacgtgtcatatatatatataaacattaaaggCTAACGTTAGTTGTGATTTGCTTTAAACAAGCATCAGCAAAAGCAATGGACTGCAGAGTTCTCTCAGTTCAGAGTCATGTTGTGAGAGGCTATGTTGGAAACAAATCTGCTACTTTTCCTTTGCAGGTGCTGGGCTTTGAAGTGGACACTATAAACTCTGTGCAGTTCTCCAATCATACAGGTTATGAGCACTGGAAAGGGCAGGTGTTGACTGCGGATGAACTCAACGTTCTCTACGAGGGAATCAAGCTTAACGATGTGAACCATTACGACTATGTGCTCACAGgaTACACTAGAGATTATTCCTTTTTGGATATGGTTGTAGACATTGTCCAGGAGCTGAAGAGAGCAAATCCGAGCCTGGTTTATGTGTGTGATCCGGTGCTAGGTGATAATGGGGCCATGTACGTTCCTGAGAACCTGCTGCCCATCTACCGAGACAGAGTTGTTCCTGCTGCAGACATAATCACTCCCAATCAGTTTGAAGCTGAACTCCTCTCTGGGAGAAAAATACATTCAGAAAAAGATGCTGTTGAAGTGATGAACCTTCTTCATTCAATGGGTCCAGACACAGTGGTAATCACCAGCTCTGACCTGCCCTCTCCTCTGGGCGATCAGTATCTGGTTGCTTTGGGGAGCCAGAAAAAAGTGAGGACAGATGGCTCCATGGTGACTCAGCAGATACGTATGGACATCCCCAGGGTGGATGCTGTGTTTGTGGGAACTGGTGATCTGTTTGCTGCAATGCTGCTGGCCTGGACACACCACCACCCTGATCTCAAGATGGCCTGCGAAAAGACCGCTTCCGTCCTTCATCATGTGATTAAGAGAACTATGACTTACGCACATGAGGTGGCCGGTCCCAATCGAAGGCCAAGTCCTGCTCAGCTGGAGCTGCGGATGGTCCAGAGTAAAGCAGACATCGAGAATCCTGCCGTGGTGGTGAATGCAGTCATATTGTAGTACTGTACTCTTACACTTTGTACTAGAAATATGAATGACATGATTAACTGCAAGAGTTTACAATCATAGCCCTGGGAATGCTGGAGgacatatattttattcatagcgttatcagttttaataatatatatgtaaagtATAACATTAATAATGGTACAATTCATGCTGGTATGCATAATGAAGATACTGCGTCCACAAAACTAACATGTTAACTCGTGTACACATTCCAGCCATAATGTTCACGTGACTGTCCATCtaatgttttaatatgatttactaTGATTTATGCACAACTATTTGGGTTTGTGAGTATTTATAAtggtttattaacattttgataATGTATTTAACTGATCAGTGTTGCCTAACTTAGAGGTCATTCAGTCTGAATTACACATATTACTTCATCCTTTGGTCTAGTCATTGCTTCAGAACTGTGCTAGCCAGCCAGGCCAAACGACTGTAAAATATTAGAAATTTCTTCATCTGAATGTCTGAATGCCTTAAAAATGCTGCTGTAGTTGATATTTGACTAAAATTATTCTTATCTTTGTAATATTAAGcaatatagttgctatggcaactgTAATACAGTATTTTGatcattaactgaaataaaaggcttccaattttatttattcttcttaattcaggaattaaatttaaaatggttACACTAA
>TCONS_00072948
GCTGCTTTCATGTCTGACATTTCTTAAGTGCTGGGCTTTGAAGTGGACACTATAAACTCTGTGCAGTTCTCCAATCATACAGGTTATGAGCACTGGAAAGGGCAGGTGTTGACTGCGGATGAACTCAACGTTCTCTACGAGGGAATCAAGCTTAACGATGTGAACCATTACGACTATGTGCTCACAGgaTACACTAGAGATTATTCCTTTTTGGATATGGTTGTAGACATTGTCCAGGAGCTGAAGAGAGCAAATCCGAGCCTGGTTTATGTGTGTGATCCGGTGCTAGGTGATAATGGGGCCATGTACGTTCCTGAGAACCTGCTGCCCATCTACCGAGACAGAGTTGTTCCTGCTGCAGACATAATCACTCCCAATCAGTTTGAAGCTGAACTCCTCTCTGGGAGAAAAATACATTCAGAAAAAGATGCTGTTGAAGTGATGAACCTTCTTCATTCAATGGGTCCAGACACAGTGGTAATCACCAGCTCTGACCTGCCCTCTCCTCTGGGCGATCAGTATCTGGTTGCTTTGGGGAGCCAGAAAAAAGTGAGGACAGATGGCTCCATGGTGACTCAGCAGATACGTATGGACATCCCCAGGGTGGATGCTGTGTTTGTGGGAACTGGTGATCTGTTTGCTGCAATGCTGCTGGCCTGGACACACCACCACCCTGATCTCA

Function

symbol description
pdxka Predicted to enable pyridoxal kinase activity. Predicted to be involved in pyridoxal 5'-phosphate salvage. Predicted to be active in cytosol. Is expressed in pronephros and ventricular zone. Orthologous to human PDXK (pyridoxal kinase).

GO:

id name namespace
GO:0009443 pyridoxal 5'-phosphate salvage biological_process
GO:0005829 cytosol cellular_component
GO:0008478 pyridoxal kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8376 Predicted to enable pyridoxal kinase activity. Predicted to be involved in pyridoxal 5'-phosphate salvage. Predicted to be active in cytosol. Is expressed in pronephros and ventricular zone. Orthologous to human PDXK (pyridoxal kinase).

Ensembl:

ensembl_id ENSDARG00000088959

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072946 False 739 mRNA 0.46 9 19623363 19646558
TCONS_00072947 False 1832 mRNA 0.41 11 19623406 19653458
TCONS_00072948 True 682 mRNA 0.48 9 19623480 19648299

Neighbor

gene id symbol gene type direction distance location
XLOC_037060 pknox1.1 coding upstream 73305 19529951 ~ 19550058 (+)
XLOC_037059 ndufv3 coding upstream 95325 19518674 ~ 19528038 (+)
XLOC_037058 si:ch211-140m22.7 coding upstream 112436 19489304 ~ 19510927 (+)
XLOC_037057 pde9a coding upstream 146115 19421841 ~ 19477248 (+)
XLOC_037056 slc37a1 coding upstream 213320 19367459 ~ 19410043 (+)
XLOC_037062 NA coding downstream 141696 19795154 ~ 20053449 (+)
XLOC_037063 NA coding downstream 144793 19798251 ~ 19810178 (+)
XLOC_037064 CR933734.1 coding downstream 167999 19821457 ~ 19823614 (+)
XLOC_037065 CR933734.2 coding downstream 183925 19837383 ~ 19841055 (+)
XLOC_037066 CR456628.2 coding downstream 733287 20386745 ~ 20392034 (+)
XLOC_037053 NA non-coding upstream 394297 19228819 ~ 19229066 (+)
XLOC_037050 NA non-coding upstream 708376 18911697 ~ 18914987 (+)
XLOC_037047 BX957328.1 non-coding upstream 1015094 18605460 ~ 18608269 (+)
XLOC_037045 BX004817.2 non-coding upstream 1272880 18350367 ~ 18350483 (+)
XLOC_037044 BX004817.1 non-coding upstream 1306843 18316403 ~ 18316520 (+)

Expression


Co-expression Network