XLOC_037062


Basic Information

Item Value
gene id XLOC_037062
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19795154 ~ 20053449 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074893
TGGGACATAGCCGCCATTTGTGTTGTATCCGAGTTAACGTGAGCTGTTATGTGGCTTTAGCGTCTTTCGCAGAGTAAACACAGTGTTACGTTCTTGTTGCGTTAAGGGCTGTAATAGTAAATCACACGCTCGAAAAGGTAATAAATGATCACGACGACAGATATTTTAAATTTCCCGCTCGGGAGAAAGTATATTGACAGACTGTAGCGGTAACAACAGATGCACCGGGTGTCCTGGCCAGCTGCATTGAGacgcaaaatgtatttttatttctccGTTTATGCTCTCAACATTATCACAAAGCCAAGCTGCATATGACCCAGACTGAGCAGCATCTCTACATCTGGGCCACACAGAAACTACACAGACAGACACTCCACACTCTGCAAGACAAACTTAGAGGAGGGAAAGAAAACCAACACTGCAGTCAGCTGAAGATGTGGACGACCAACATGCTGAGAAGGAGACACTTGAGGTTGAAGATGGTGAGAGACACTGATGAGAAGACACACAACACTAAGGAGGTAGCTGAGACATACTGAATGTAAACTGTGTATGGACGTGTGTAGAAATAAACCACCTGTTGGAGGAAAACTGACAGCTGCTGTGTGAACTTGAAGAATACAGGATGTCTGATGGATTTTGTAACAAGAATGATGCTAAATtaccaaacagtaaaaaaaaaaaaaaacacaaaatcttaATAACAAGCACTGAGCCATAAACATGATACTCCCTTAGGAAGGTGAAGATGTCACATTACAGCAAAGGATTGTAACTGTCAAACAAAGCAACGTTCACTTGTAGTGTAGAAGAGCTGTAGATGTCAAGAGTTAAAAGCCCAggtgtataaatgttttttgtgcataattgatacattatttaaaaaaaatcctttgcatttttgtaactttgttttctttcactgtatgtatgagtgtgttttgctGATGTTTCATCCTGTCTTATGTAAACAGTATGGGGCATTCCTCCAGAAATGACTTTTCCCTCAGtgcctgaataaaaatataaattgtataaatgcaaataaatggaGGATGACTTAAAATGTGCAGTTAACTCATTTATTGTTGATGTTCTTCACAATCACAAAACTGGTACATCAGAACTAAACACAAGGTAAGCAGTTATTACTTGAACTAAATAATCCTTTAAAGAACTGAGACAAGTGTTTTTACTTAAAGTTAAACAATAAGTCAATCAGTAGTTTGAGCtaaatagttcacccacaaatttaAAGTGACTTACTATTTACCTGtcatcaagtggttctaaacctttatgagtttattttttctctttacacTAATAAAGATATcataaataaagctgaaaatctgtaattgAAATTGTAGAAAAaccaacaaatacaatggaagtcagtagttaca
>TCONS_00075082
TGGGACATAGCCGCCATTTGTGTTGTATCCGAGTTAACGTGAGCTGTTATGTGGCTTTAGCGTCTTTCGCAGAGTAAACACAGTGTTACGTTCTTGTTGCGTTAAGGGCTGTAATAGTAAATCACACGCTCGAAAAGGTAATAAATGATCACGACGACAGATATTTTAAATTTCCCGCTCGGGAGAAAGTATATTGACAGACTGTAGCGGTAACAACAGATGCACCGGGTGTCCTGGCCAGCTGCATTGAGacgcaaaatgtatttttatttctccGTTTATGCTCTCAACATTATCACAAAGCCAAGCTGCATATGACCCAGACTGAGCAGCATCTCTACATCTGGGCCACACAGAAACTACACAGACAGACACTGCACGCTCTGCAAGACAAACTAAGAGGGGGAAAGAAAACCAACACTGCAGTCAGTTGAAGATGTGGACGAACAACATGCTGAGAAGGAGACACTTGAGGTTGGAGATAGTGAGAAACACTGATGAGGAGACACACATCACTGAGCTGAGACAAACTGCATGTAAATTGTGTATGGACGTGTAAAAGTAAATCGCCTGTTGAAGGAGAACTGACAGCAACTTTGTGAACTTGAAGGATACAGGGTGTCTGATGAATTTTGTAACAAGAATGATGCTAAAGtatcaaacagtaaaaaaaaacacaaaatctaaataacAAGCACTGAGCCATAAACATGATACTCCCTTGTGAAGGTGAAGATGTCACATTACAGCATAGGATTGTAACTGTCAAACAAAGCAACGTTCAACTGTTGTGTAGAAGAGCTGTAGTTGTCACTTAAAGTTAAAAGCTTAGATGTATACATGCATTCTGTGCTTATTTGAAACATTCTTTAcaaattcatttacatttttgttacttagttttttttcactgtgtgtatgagtgtgttttgctGATGTTTCATCCTGTCTTATGAAAATGATATGATCCATTCCTCCAGAAATGACTTTTCACTCAGTGCctgaataaaaacataatttgtatGAATGTTAATAAATG
>TCONS_00075083
GGGACATAGCCGCCATTTGTGTTGTATCCGAGTTAACGTGAGCTGTTATGTGGCTTTAGCGTCTTTCGCAGAGTAAACACAGTGTTACGTTCTTGTTGCGTTAAGGGCTGTAATAGTAAATCACACGCTCGAAAAGGTAATAAATGATCACGACGACAGATATTTTAAATTTCCCGCTCGGGAGAAAGTATATTGACAGACTGTAGCGGTAACAACAGATGCACCGGGTGTCCTGGCCAGCTGCATTGAGacgcaaaatgtatttttatttctccGTTTATGCTCTCAACATTATCACAAAGCCAAGCTGCATATGACCCAGACTGAGCAGCATCTCTACATCTGGGCCACACAGAAACTACACAGACAGACACTCCACACTCTGCAAGACAAACTTAGAGGAGGGAAAGAAAACCAACACTGCAGTCAGCTGAAGATGTGGACGACCAACATGCTGAGAAGGAGACACTTGAGGTTGAAGATGGTGAGAGACACTGATGAGAAGACACACAACACTAAGGAGGTAGCTGAGACATACTGAATGTAAACTGTGTATGGACGTGTGTAGAAATAAACCACCTGTTGGAGGAAAACTGACAGCTGCTGTGTGAACTTGAAGAATACAGGATGTCTGATGGATTTTGTAACAAGAATGATGCTAAATtaccaaacagtaaaaaaaaaaaaaaacacaaaatcttaATAACAAGCACTGAGCCATAAACATGATACTCCCTTGTGAAGGTGAAGATGTCACATTACAGCATAGGATTGTAACTGTCAAACAAAGCAACGTTCAACTGTTGTGTAGAAGAGCTGTAGTTGTCACTTAAAGTTAAAAGCTTAGATGTATACATGCATTCTGTGCTTATTTGAAACATTCTTTAcaaattcatttacatttttgttacttagttttttttcactgtgtgtatgagtgtgttttgctGATGTTTCATCCTGTCTTATGAAAATGATATGATCCATTCCTCCAGAAATGACTTTTCACTCAGTGCctgaataaaaacataatttgtatGAATGTTAATAAATG
>TCONS_00075084
GCCATTTGTGTTGTATCCGAGTTAACGTGAGCTGTTATGTGGCTTTAGCGTCTTTCGCAGAGTAAACACAGTGTTACGTTCTTGTTGCGTTAAGGGCTGTAATAGTAAATCACACGCTCGAAAAGGTAATAAATGATCACGACGACAGATATTTTAAATTTCCCGCTCGGGAGAAAGTATATTGACAGACTGTAGCGGTAACAACAGATGCACCGGGTGTCCTGGCCAGCTGCATTGAGacgcaaaatgtatttttatttctccGTTTATGCTCTCAACATTATCACAAAGGTAAGTAcgaaaaaatatttaagtaactTTACAACTGTCATTGCTTGAGcttcaaataattttattaattcagtgtaacactttagttttgggagtaactgcatttaaatatttacgaATCAACTAAGTGCTAAGATTTAAGATTGTAAAGTATTTGATTgggaaaatattgtaaaatacttttttacaaCTTAGATTTGCTGATGTACTCACTCCCTGACAAAAAGTACATTTTCGACTGTgctttttctgaaaacaaatacAGTTTTTTGTTGAAATCATtccctttaatgttttaaatctcCAGACTGGAACTTcatgaaactgcagttaaaaaacCCTGTTCTTTTCCACTGTCgaaaaaatatcaatatattGGATGACAAAGTTAATGCTTAAAAGTTCAAAATTCAATTCAGGTTTCTTATgctaaaatgtcatatttttcatAAGCATGTAGCATTATAgtacatatattttttacttattctttttgtgttatatttttgctgtatatatatttctaaCTTTGTCATTGCCAGCCAAGCTGCATATGACCCAGACTGAGCAGCATCTCTACATCTGGGCCACACAGAAACTACACAGACAGACACTCCACACTCTGCAAGACAAACTTAGAGGAGGGAAAGAAAACCAACACTGCAGTCAGCTGAAGATGTGGACGACCAACATGCTGAGAAGGAGACACTTGAGGTTGAAGATGGTGAGAGACACTGATGAGAAGACACACAACACTAAGGAGGTAGCTGAGACATACTGAATGTAAACTGTGTATGGACGTGTGTAGAAATAAACCACCTGTTGGAGGAAAACTGACAGCTGCTGTGTGAACTTGAAGAATACAGGATGTCTGATGGATTTTGTAACAAGAATGATGCTAAATtaccaaacagtaaaaaaaaaaaaaaacacaaaatcttaATAACAAGCACTGAGCCATAAACATGATACTCCCTTAGGAAGGTGAAGATGTCACATTACAGCAAAGGATTGTAACTGTCAAACAAAGCAACGTTCACTTGTAGTGTAGAAGAGCTGTAGATGTCAAGAGTTAAAAGCCCAggtgtataaatgttttttgtgcataattgatacattatttaaaaaaaatcctttgcatttttgtaactttgttttctttcactgtatgtatgagtgtgttttgctGATGTTTCATCCTGTCTTATGTAAACAGTATGGGGCATTCCTCCAGAAATGACTTTTCCCTCAGtgcctgaataaaaatataaattgtataaatgcaaataaatggaGGATGACTTAAAATGTGCAGTTAACTCATTTATTGTTGATGTTCTTCACAATCACAAAACTGGTACATCAGAACTAAACACAAGGTAAGCAGTTATTACTTGAACTAAATAATCCTTTAAAGAACTGAGACAAGTGTTTTTACTTAAAGTTAAACAATAAGTCAATCAGTAGTTTGAGCtaaatagttcacccacaaatttaAAGTGACTTACTATTTACCTGtcatcaagtggttctaaacctttatgagtttattttttctctttacacTAATAAAGATATcataaataaagctgaaaatctgtaattgAAATTGTAGAAAAaccaacaaatacaatggaagtcagtagttaca
>TCONS_00075089
cagagctccagtaattaaatattaccttttaggagaatgtttctgtgtttaatgactttggacagagttctagctccagaaagattacaatttctaaaaGCCTTATTAGttaatacacatattgtggccttatgAAATTattggcaagaaaaataaattcatgaatggttacacaacataggATGTTAAAGAGAAGTTTAATTGTTCATTACAATGAATAAAATGGAGgatggcatgtgtaatttaataaactaacaaactttcttattatttattttttcttttcttatctatGTTTCTTTCCTTTGTtaaagcagatgtgtaatctctgtgtttaaaacctccagctctgcctctgtaaagtgcgttgcccttttttttctcaccgtgactttctatggtgactcgtgaattcggcgatctactgaaaatgccttcaggtatGTGACGTGCACGcacattaacccgcggttatcttcaggaggttgatttaactaactcttatcacctgttttggaagcaacatactcgcggtaagcaggttttgggtaaatcaaccgagagttcagggtttagcagatggtaagttaacccagctttctggaatacccccctggcCTGCTGCATTGAGAGGCAAAATATATCTTCATTTCTCCGTTTATGCTCTCAATATTTTCACAAAGCCAGGCTGCATATGAGATGATGGAGACTGGCATAGACTGAGCACCATGTTTACATCTGGGCCACACAGAAACTACACAGACAGACACTGCACGCTCTGCAAGACAAACTAAGAGGGGGAAAGAAAACCAACACTGCAGTCAGTTGAAGATGTGGACGAACAACATGCTGAGAAGGAGACACTTGAGGTTGGAGATAGTGAGAAACACTGATGAGGAGACACACATCACTGAGCTGAGACAAACTGCATGTAAATTGTGTATGGACGTGTAAAAGTAAATCGCCTGTTGAAGGAGAACTGACAGCAACTTTGTGAACTTGAAGGATACAGGGTGTCTGATGAATTTTGTAACAAGAATGATGCTAAAGtatcaaacagtaaaaaaaaacacaaaatctaaataacAAGCACTGAGCCATAAACATGATACTCCCTTGTGAAGGTGAAGATGTCACATTACAGCATAGGATTGTAACTGTCAAACAAAGCAACGTTCAACTGTTGTGTAGAAGAGCTGTAGTTGTCACTTAAAGTTAAAAGCTTAGATGTATACATGCATTCTGTGCTTATTTGAAACATTCTTTAcaaattcatttacatttttgttacttagttttttttcactgtgtgtatgagtgtgttttgctGATGTTTCATCCTGTCTTATGAAAATGATATGATCCATTCCTCCAGAAATGACTTTTCACTCAGTGCctgaataaaaacataatttgtatGAATGTTAATAAATG
>TCONS_00075088
cagagctccagtaattaaatattaccttttaggagaatgtttctgtgtttaatgactttggacagagttctagctccagaaagattacaatttctaaaaGCCTTATTAGttaatacacatattgtggccttatgAAATTattggcaagaaaaataaattcatgaatggttacacaacataggATGTTAAAGAGAAGTTTAATTGTTCATTACAATGAATAAAATGGAGgatggcatgtgtaatttaataaactaacaaactttcttattatttattttttcttttcttatctatGTTTCTTTCCTTTGTtaaagcagatgtgtaatctctgtgtttaaaacctccagctctgcctctgtaaagtgcgttgcccttttttttctcaccgtgactttctatggtgactcgtgaattcggcgatctactgaaaatgccttcaggtatGTGACGTGCACGcacattaacccgcggttatcttcaggaggttgatttaactaactcttatcacctgttttggaagcaacatactcgcggtaagcaggttttgggtaaatcaaccgagagttcagggtttagcagatggtaagttaacccagctttctggaatacccccctggcCTGCTGCATTGAGAGGCAAAATATATCTTCATTTCTCCGTTTATGCTCTCAATATTTTCACAAAGGCTGCATATGAGATGATGGAGACTGGCATAGACTGAGCACCATGTTTACATCTGGGCCACACAGAAACTACACAGACAGACACTGCACGCTCTGCAAGACAAACTAAGAGGGGGAAAGAAAACCAACACTGCAGTCAGTTGAAGATGTGGACGAACAACATGCTGAGAAGGAGACACTTGAGGTTGGAGATAGTGAGAAACACTGATGAGGAGACACACATCACTGAGCTGAGACAAACTGCATGTAAATTGTGTATGGACGTGTAAAAGTAAATCGCCTGTTGAAGGAGAACTGACAGCAACTTTGTGAACTTGAAGGATACAGGGTGTCTGATGAATTTTGTAACAAGAATGATGCTAAAGtatcaaacagtaaaaaaaaacacaaaatctaaataacAAGCACTGAGCCATAAACATGATACTCCCTTGTGAAGGTGAAGATGTCACATTACAGCATAGGATTGTAACTGTCAAACAAAGCAACGTTCAACTGTTGTGTAGAAGAGCTGTAGTTGTCACTTAAAGTTAAAAGCTTAGATGTATACATGCATTCTGTGCTTATTTGAAACATTCTTTAcaaattcatttacatttttgttacttagttttttttcactgtgtgtatgagtgtgttttgctGATGTTTCATCCTGTCTTATGAAAATGATATGATCCATTCCTCCAGAAATGACTTTTCACTCAGTGCctgaataaaaacataatttgtatGAATGTTAATAAATG
>TCONS_00074894
cagagctccagtaattaaatattaccttttaggagaatgtttctgtgtttaatgactttggacagagttctagctccagaaagattacaatttctaaaaGCCTTATTAGttaatacacatattgtggccttatgAAATTattggcaagaaaaataaattcatgaatggttacacaacataggATGTTAAAGAGAAGTTTAATTGTTCATTACAATGAATAAAATGGAGgatggcatgtgtaatttaataaactaacaaactttcttattatttattttttcttttcttatctatGTTTCTTTCCTTTGTtaaagcagatgtgtaatctctgtgtttaaaacctccagctctgcctctgtaaagtgcgttgcccttttttttctcaccgtgactttctatggtgactcgtgaattcggcgatctactgaaaatgccttcaggtatGTGACGTGCACGcacattaacccgcggttatcttcaggaggttgatttaactaactcttatcacctgttttggaagcaacatactcgcggtaagcaggttttgggtaaatcaaccgagagttcagggtttagcagatggtaagttaacccagctttctggaatacccccctggcCTGCTGCATTGAGAGGCAAAATATATCTTCATTTCTCCGTTTATGCTCTCAATATTTTCACAAAGATTTCTAACTTTGTCATTGCCAGCCAGGCTGCATATGAGATGATGGAGACTGGCATAGACTGAGCACCATGTTTACATCTGGGCCACACAGAAACTACACAGACAGACACTGCACGCTCTGCAAGACAAACTAAGAGGGGGAAAGAAAACCAACACTGCAGTCAGTTGAAGATGTGGACGAACAACATGCTGAGAAGGAGACACTTGAGGTTGGAGATAGTGAGAAACACTGATGAGGAGACACACATCACTGAGCTGAGACAAACTGCATGTAAATTGTGTATGGACGTGTAAAAGTAAATCGCCTGTTGAAGGAGAACTGACAGCAACTTTGTGAACTTGAAGGATACAGGGTGTCTGATGAATTTTGTAACAAGAATGATGCTAAAGtatcaaacagtaaaaaaaaacacaaaatctaaataacAAGCACTGAGCCATAAACATGATACTCCCTTGTGAAGGTGAAGATGTCACATTACAGCATAGGATTGTAACTGTCAAACAAAGCAACGTTCAACTGTTGTGTAGAAGAGCTGTAGTTGTCACTTAAAGTTAAAAGCTTAGATGTATACATGCATTCTGTGCTTATTTGAAACATTCTTTAcaaattcatttacatttttgttacttagttttttttcactgtgtgtatgagtgtgttttgctGATGTTTCATCCTGTCTTATGAAAATGATATGATCCATTCCTCCAGAAATGACTTTTCACTCAGTGCctgaataaaaacataatttgtatGAATGTTAATAAATG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074893 False 1412 lncRNA 0.37 2 19795154 19797107
TCONS_00075082 False 1039 lncRNA 0.39 3 19795154 20053449
TCONS_00075083 False 1054 lncRNA 0.39 3 19795155 20053449
TCONS_00075084 False 1942 lncRNA 0.34 1 19795166 19797107
TCONS_00075089 False 1434 lncRNA 0.37 2 20051419 20053449
TCONS_00075088 False 1430 lncRNA 0.37 2 20051419 20053449
TCONS_00074894 True 1457 lncRNA 0.37 2 20051419 20053449

Neighbor

gene id symbol gene type direction distance location
XLOC_037061 pdxka coding upstream 141696 19623363 ~ 19653458 (+)
XLOC_037060 pknox1.1 coding upstream 245096 19529951 ~ 19550058 (+)
XLOC_037059 ndufv3 coding upstream 267116 19518674 ~ 19528038 (+)
XLOC_037058 si:ch211-140m22.7 coding upstream 284227 19489304 ~ 19510927 (+)
XLOC_037057 pde9a coding upstream 317906 19421841 ~ 19477248 (+)
XLOC_037066 CR456628.2 coding downstream 333296 20386745 ~ 20392034 (+)
XLOC_037067 CR456628.1 coding downstream 380363 20433812 ~ 20436515 (+)
XLOC_037068 parp4 coding downstream 430397 20483846 ~ 20502622 (+)
XLOC_037069 vtcn1 coding downstream 466397 20519846 ~ 20524673 (+)
XLOC_037070 trim45 coding downstream 473023 20526472 ~ 20539280 (+)
XLOC_037053 NA non-coding upstream 566088 19228819 ~ 19229066 (+)
XLOC_037050 NA non-coding upstream 880167 18911697 ~ 18914987 (+)
XLOC_037047 BX957328.1 non-coding upstream 1186885 18605460 ~ 18608269 (+)
XLOC_037045 BX004817.2 non-coding upstream 1444671 18350367 ~ 18350483 (+)
XLOC_037044 BX004817.1 non-coding upstream 1478634 18316403 ~ 18316520 (+)
XLOC_037077 NA non-coding downstream 1148823 21202272 ~ 21205472 (+)
XLOC_037078 pla1a non-coding downstream 1161491 21214940 ~ 21226132 (+)
XLOC_037086 BX649266.2 non-coding downstream 1442424 21495873 ~ 21496699 (+)

Expression


Co-expression Network