G1772992


Basic Information

Item Value
gene id G1772992
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 9877812 ~ 9878249 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2030498
CTGGTCCCAGCTCTGTTTGTACTCTAACCATACTCCACTGATGTCACTGTCAAGACAAATATAGTTTTTCCCCAATGTGATATTTCCCTTTAAAATAACACTTACATTTTACTGAAAACACTTTACACTTTCATATGAAAAACCAGTCGCACAACCATATACTTTTCTATATGTTTATTAAAAGATAAGACATTGTATTTTAGGGTGGAACATTTGACACAGTGGCGGAATGAATGTGAACTTACCTCGTTGAGTTCTTGAAGAGTGGATTCGTTGAGTTCTTGAAGAGTTGATTCGTTGAGTTCTTGAAGAGTTGATTCGTTGAGTTCTTGAATCATTCAGCTGTTGAAGGCTGCTTTTGTTGCCAGCCTGAAACCCAGCAGACAATGTAGCTGTAGCTTAAACCACACAGAAATCTACATTGTATGCTAGGTCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2030498 True 438 lncRNA 0.38 1 9877812 9878249

Neighbor

gene id symbol gene type direction distance location
kdm6a kdm6a coding upstream 48259 9739829 ~ 9829553 (+)
LOC110501353 gpr82 coding upstream 467058 9400241 ~ 9410754 (+)
LOC110501354 NA coding upstream 478525 9397532 ~ 9399287 (+)
LOC110501352 gpr34 coding upstream 490160 9384301 ~ 9387652 (+)
ddx3xa ddx3x coding upstream 560980 9295322 ~ 9316832 (+)
ccdc80 ccdc80 coding downstream 172959 10051208 ~ 10069369 (+)
f5 LOC106581936 coding downstream 204601 10082850 ~ 10101481 (+)
LOC110501369 LOC106581890 coding downstream 228211 10106460 ~ 10107999 (+)
rgcc rgcc coding downstream 230671 10108920 ~ 10116436 (+)
dgkh LOC106581933 coding downstream 362986 10241235 ~ 10322559 (+)
G1773009 NA non-coding upstream 2241 9875363 ~ 9875571 (+)
G1773007 NA non-coding upstream 6085 9871523 ~ 9871727 (+)
G1772988 NA non-coding upstream 28134 9849403 ~ 9849678 (+)
G1772986 NA non-coding upstream 30572 9847019 ~ 9847240 (+)
G1772930 cssa21hxorf36 non-coding upstream 31800 9832155 ~ 9846012 (+)
G1773033 NA non-coding downstream 37026 9915275 ~ 9915480 (+)
G1773037 NA non-coding downstream 40318 9918567 ~ 9918820 (+)
G1773038 NA non-coding downstream 40614 9918863 ~ 9919143 (+)
G1773043 NA non-coding downstream 51468 9929717 ~ 9929938 (+)
G1773115 NA non-coding downstream 140378 10018627 ~ 10034857 (+)
G1772556 LOC106567841 other upstream 755355 9106015 ~ 9122457 (+)
G1772554 gpr161 other upstream 821410 9055705 ~ 9056402 (+)
LOC110501322 LOC106581983 other upstream 1470107 8358225 ~ 8410070 (+)
G1771580 NA other upstream 2110304 7767065 ~ 7767508 (+)
G1775959 NA other downstream 1633716 11511965 ~ 11516413 (+)
G1775962 LOC100286503 other downstream 1642474 11520723 ~ 11522390 (+)
LOC110501387 LOC106581925 other downstream 1974222 11852404 ~ 11863661 (+)
G1776230 NA other downstream 2153032 12031281 ~ 12032340 (+)
LOC110501399 LOC106581914 other downstream 2323907 12202156 ~ 12270054 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037984 dre-mir-221 non-coding NC_007120.7 CM002893.2 33920932 ~ 33921024 (-)
grasscarp (Ctenopharyngodon idella) G92018 NA non-coding CI01000015 null 7230703 ~ 7278119 (-)
tiger barb (Puntius tetrazona) G70800 NA non-coding NC_056707.1 CM032076.1 16605396 ~ 16606343 (+)