XLOC_037069 (vtcn1)


Basic Information

Item Value
gene id XLOC_037069
gene name vtcn1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 20519846 ~ 20524673 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072956
GTGGAAGCAAAGTTAGAAACTAGTCTGAGGGGATTAAATCGTGCTCGTCCGTCTTTGCCTGTTGATTTATTATGCCGTCTACAGAGATGCTGAGCACAGCGGTACATCGATTCATCAAATACACTTCATAAAAGTAGACCAGCTTACACCAAAATGGCTTCAATTGGACAAATAATCTTTGGAAGGTAGAAACATGGGCTACTTACTTCTCTATTTCATGTTAAATAGTTAAGTGTACTGTTTAACGGTTCAATTTTGAATGTGTGTCTTCTGCAGTATGATTTGTCTCATAGTAGTCATGTCTGGAATCATCGTTTTCATTTTGGCTATTGCATTTTCAGTGTCCCAAGGCACCGTTGAGAGCATTAGTCCAACTACTGTGGGAAATCTTGATGATGATGTGATGCTGGGTTGCAGGTTTCTTAGTAACACAGGCAATGGACAGTTTAGTGATGTGTCAATTACTTGGCTGAAAGATTCCGTCAGTGGTGTGGTTTATGAATACAAGAACAAAGCAGCCCAGCTTCAGACACAGAACGCACAGTTCAGCAACAGGGCTCAACTGTTCCCAGACTCAATTTCAACAGGGAACGCTTCCCTGCTGCTGAGAAACATAAAGCTGGAGGATGACGGCGTGTATCGCTGCACTGTCAATGCAGCAAAAGTCTCCGGAACTGCCATTGTTACACTCAGAGTAGCTGCTTTTTCAGCTCCCACATTTACTGAACTGACCAATGGATCTCTGTCTGCCGTGGCAACTAAATGGTTTCCTCAGCCAGAGGTGAACTGGTACAATCAAAGTGGGCAGATTTTAAACAGCAGCACTAGTTTTTTCAACATTGCAGGAATCATACATGTTTCTAGTCTGCTTCAAGACCCAGTAAAGGAGAATGAAACTTACCGATGTCTCATCCAGAACTCTCTTGTGGTCGCTGTCTCAGAAGCAACTGTCACAGCACACAAAGTGGCGCAGAGCACATACTTCATTTTCAATGCTGCATCTACAAAAAAGTCATGTTTACATCTACTGGTCACAGTCCTCATTCTTCTATATGGAGTCCGGTAGACAAGTCTCTCCAGCAATGGTCAAGCTGATCAATTATAAAGGACTGTATTTATCAGCTGCTACAGACTGGAATATGTTGTACTGAATACTCACACATTTTAAATGGTGACTTTTCCAACTGGAAGAAGATCTAGAAACCTGTCAAATAcccacaacaacaaaaatatttgataaatccaaCGCTATATACAATTTGCATATTCATCAATGACTGTcaggtttaggggtgggtttgggtgctacgcctccttttttaagtcatacattttttttacgaTTGAACTCGAAcgatataaaataacataaaatagttatttttccTCTTGAGATAAATTCTTTTTATTTCATGAACACACATTTTACACATGGTAAAATTATTTATCATGGACTATTTTACATACAGCTAAACTGTTCTTGGAAATAAGTTGAATtaccatttgcaccactttgtactttttaaaattttataattattataatttagatTTATAATTTCATCTATAAGGGgataataaatatgtttagaaattaatTAAGGATAAGAAAGTAAGACTTAATGACAAAGCCCGGTAGTTAATAACATTAGTATATGTCTAATGCGTTCAATAATCTTGGTTCATGTTCATTTTAGCATAACTGCTGTAGCATCAAAAGGTGTGTCTGTTATTACTGTGCAATAAACCTGTGAGAGACTAACATTAAACATTTGTctatttataatgtaataaaacattaaaaacactgttgtaaattGAATTAATGTCTTAGTTGATGTAATGCAGTAACTAATActcattaaaatgtactcactatttactccccTTTAAGGGGTTTCCAAAccttatgaaatatatatatttttttcttctgaacatgatAAGCTtatttcccagagttgggttgcggctggaagggcatccgctgcgtaaaaacttgctggataagttggtggatcattctgctgtggtgaccccagattaataaagggactaagccgacaagaaaatgaatgaat
>TCONS_00072957
TCTGAGGGGATTAAATCGTGCTCGTCCGTCTTTGCCTGTTGATTTATTATGCCGTCTACAGAGATGCTGAGCACAGCGGTACATCGATTCATCAAATACACTTCATAAAAGTAGACCAGCTTACACCAAAATGGCTTCAATTGGACAAATAATCTTTGGAAGTATGATTTGTCTCATAGTAGTCATGTCTGGAATCATCGTTTTCATTTTGGCTATTGCATTTTCAGTGTCCCAAGGCACCGTTGAGAGCATTAGTCCAACTACTGTGGGAAATCTTGATGATGATGTGATGCTGGGTTGCAGGTTTCTTAGTAACACAGGCAATGGACAGTTTAGTGATGTGTCAATTACTTGGCTGAAAGATTCCGTCAGTGGTGTGGTTTATGAATACAAGAACAAAGCAGCCCAGCTTCAGACACAGAACGCACAGTTCAGCAACAGGGCTCAACTGTTCCCAGACTCAATTTCAACAGGGAACGCTTCCCTGCTGCTGAGAAACATAAAGCTGGAGGATGACGGCGTGTATCGCTGCACTGTCAATGCAGCAAAAGTCTCCGGAACTGCCATTGTTACACTCAGAGTAGCTGCTTTTTCAGCTCCCACATTTACTGAACTGACCAATGGATCTCTGTCTGCCGTGGCAACTAAATGGTTTCCTCAGCCAGAGGTGAACTGGTACAATCAAAGTGGGCAGATTTTAAACAGCAGCACTAGTTTTTTCAACATTGCAGGAATCATACATGTTTCTAGTCTGCTTCAAGACCCAGTAAAGGAGAATGAAACTTACCGATGTCTCATCCAGAACTCTCTTGTGGTCGCTGTCTCAGAAGCAACTGTCACAG

Function

symbol description
vtcn1 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human VTCN1 (V-set domain containing T cell activation inhibitor 1).

GO:

id name namespace
GO:0001817 regulation of cytokine production biological_process
GO:0050776 regulation of immune response biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04514 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-070912-388 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human VTCN1 (V-set domain containing T cell activation inhibitor 1).

Ensembl:

ensembl_id ENSDARG00000078643

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072956 False 2081 mRNA 0.37 4 20519846 20524673
TCONS_00072957 True 842 mRNA 0.44 4 20519869 20523292

Neighbor

gene id symbol gene type direction distance location
XLOC_037068 parp4 coding upstream 17224 20483846 ~ 20502622 (+)
XLOC_037067 CR456628.1 coding upstream 83331 20433812 ~ 20436515 (+)
XLOC_037066 CR456628.2 coding upstream 127812 20386745 ~ 20392034 (+)
XLOC_037065 CR933734.2 coding upstream 678791 19837383 ~ 19841055 (+)
XLOC_037064 CR933734.1 coding upstream 696232 19821457 ~ 19823614 (+)
XLOC_037070 trim45 coding downstream 1799 20526472 ~ 20539280 (+)
XLOC_037071 man1a2 coding downstream 29505 20554178 ~ 20767773 (+)
XLOC_037072 tent5c coding downstream 256140 20780813 ~ 20784047 (+)
XLOC_037073 wdr3 coding downstream 329221 20853894 ~ 20872565 (+)
XLOC_037074 hao2 coding downstream 622189 21146862 ~ 21164617 (+)
XLOC_037063 NA non-coding upstream 709668 19798251 ~ 19810178 (+)
XLOC_037077 NA non-coding downstream 677599 21202272 ~ 21205472 (+)
XLOC_037078 pla1a non-coding downstream 690267 21214940 ~ 21226132 (+)
XLOC_037086 BX649266.2 non-coding downstream 971200 21495873 ~ 21496699 (+)
XLOC_037089 NA non-coding downstream 1237023 21761696 ~ 21765735 (+)
XLOC_037095 CR536604.1 non-coding downstream 1459436 21984109 ~ 21985996 (+)

Expression


Co-expression Network