XLOC_003707


Basic Information

Item Value
gene id XLOC_003707
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42839850 ~ 42883298 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008687
CTTTGTCTGGTATTGTAGTCAAACTCCATGCTGAGACGGTGGTTGATGCTCTAGTTTCTGTTTCAAGTTCAGTTCTTCATCTAAATCGCAATCTCTCCACCGCCATGAAAGAGGACCATCAGCAGCCAGAGCCCGTGTTTCTCAGCTCTGGAACCCGATCAGAAAGGAATGTTTTCTGGCCTCTTTCTCCATCATTCTGCAGCTCCGGTCAGCCTGTCACCCGAGCCCTGTGATATACTGTAGGCTCCTCCGTCCTTTATGTGCCGTTCTCCGGGGACGGCCCACACAGAGGAGCATTGTAGGACGGCAGACACAATGGGATTTACATGAGGAATGTTGACCAGAGCCACCAAAAACCAGTCCGGCCACCTGCAACAAAGACCTGGATTAAAAACGGCATTTGCAGAATCTGAGGTGTGTTGAAGCATTTACAATTAATGATGTGAGGATTTCATCTCTGAAATATGCTGCTGTGTTATTGTAACCCAACACTTACTAATGACACGTTGATGGAAATGATGTGCTTTCTGCTTACACTTGCTTTAAGACTTTCAGGATAAGGTTTCATAAATCACTTGTCGCGCTTCTAATaattagttttaacagcagagaaatgtgtttgtgtgtaaactgTGATGATGATTTGTGGTTGAGTCAAAGTCCctataaggcaagtcatttcacttggcggccatctttgaaacatctCTCTTGTGCATTCTGTTTGAGTGGGGAAACATTCAATTCTCCATAACTG
>TCONS_00008688
GTCTGGTATTGTAGTCAAACTCCATGCTGAGACGGTGGTTGATGCTCTAGTTTCTGTTGACAACAtcaatgaattgtgtggaacccggcATTTTTCTTCACAGTCAAGTTCAGTTCTTCATCTAAATCGCAATCTCTCCACCGCCATGAAAGAGGACCATCAGCAGCCAGAGCCCGTGTTTCTCAGCTCTGGAACCCGATCAGAAAGGAATGTTTTCTGGCCTCTTTCTCCATCATTCTGCAGCTCCGGTCAGCCTGTCACCCGAGCCCTGTGATATACTGTAGGCTCCTCCGTCCTTTATGTGCCGTTCTCCGGGGACGGCCCACACAGAGGAGCATTGTAGGACGGCAGACACAATGGGATTTACATGAGGAATGTTGACCAGAGCCACCAAAAACCAGTCCGGCCACCTGCAACAAAGACCTGGATTAAAAACGGCATTTGCAGAATCTGAGACCCA
>TCONS_00008689
CTGGTATTGTAGTCAAACTCCATGCTGAGACGGTGGTTGATGCTCTAGTTTCTGTTTCAAGTTCAGTTCTTCATCTAAATCGCAATCTCTCCACCGCCATGAAAGAGGACCATCAGCAGCCAGAGCCCGTGTTTCTCAGCTCTGGAACCCGATCAGAAAGGAATGTTTTCTGGCCTCTTTCTCCATCATTCTGCAGCTCCGGTCAGCCTGTCACCCGAGCCCTGTGATATACTGTAGGCTCCTCCGTCCTTTATGTGCCGTTCTCCGGGGACGGCCCACACAGAGGAGCATTGTAGGACGGCAGACACAATGGGTCAGTGGCTCTCAGGTTTGCTTTATGAGCGAGTGTTTGGTGCAGTTGAGTGGAGATGTATAGATGAGGGTCCGATATCGCTTTCCTTCATTCATCTTCCTCCAGCCGCCCCACATTAACACTTTTACAGCAGATTTGTGTGTCTGCATTTGTCCTGCTGGAGAAACCGCCTCCATCTTTATGGTTTTGGCAATAAAACTAATGGAGCAGCTTCTAATGTTCGACCCTTATTAGTCATTTTGGAGAGGTAAAACCGTGTAGAATAAGTCTGGGTTGTGTTTTA
>TCONS_00008690
AGTCAAACTCCATGCTGAGACGGTGGTTGATGCTCTAGTTTCTGTTGACAACAtcaatgaattgtgtggaacccggcATTTTTCTTCACAGTCAAGTTCAGTTCTTCATCTAAATCGCAATCTCTCCACCGCCATGAAAGAGGACCATCAGCAGCCAGAGCCCGTGTTTCTCAGCTCTGGAACCCGATCAGAAAGGAATGTTTTCTGGCCTCTTTCTCCATCATTCTGCAGCTCCGGTCAGCCTGTCACCCGAGCCCTGTGATATACTGTAGGCTCCTCCGTCCTTTATGTGCCGTTCTCCGGGGACGGCCCACACAGAGGAGCATTGTAGGACGGCAGACACAATGGGATTTACATGAGGAATGTTGACCAGAGCCACCAAAAACCAGTCCGGCCACCTGCAACAAAGACCTGGATTAAAAACGGCATTTGCAGAATCTGAGGTGTGTTGAAGCATTTACAATTAATGATGTGAGGATTTCATCTCTGAAATATGCTGCTGTGTTATTGTAACCCAACACTTACTAATGACACGTTGATGGAAATGATGTGCTTTCTGCTTACACTTGCTTTAAGACTTTCAGGATAAGGTTTCATAAATCACTTGTCGCGCTTCTAATaattagttttaacagcagagaaatgtgtttgtgtgtaaactgTGATGATGATTTGTGGTTGAGTCAAAGTCCctataaggcaagtcatttcacttggcggccatctttgaaacatctCTCTTGTGCATTCTGTTTGAGTGGGGAAACATTCAATTCTCCATAACTG
>TCONS_00007180
GTCAAACTCCATGCTGAGACGGTGGTTGATGCTCTAGTTTCTGTTGACAACAtcaatgaattgtgtggaacccggcATTTTTCTTCACAGTCAAGTTCAGTTCTTCATCTAAATCGCAATCTCTCCACCGCCATGAAAGAGGACCATCAGCAGCCAGAGCCCGTGTTTCTCAGCTCTGGAACCCGATCAGAAAGGAATGTTTTCTGGCCTCTTTCTCCATCATTCTGCAGCTCCGGTCAGCCTGTCACCCGAGCCCTGTGATATACTGTAGGCTCCTCCGTCCTTTATGTGCCGTTCTCCGGGGACGGCCCACACAGAGGAGCATTGTAGGACGGCAGACACAATGGGTCAGTGGCTCTCAGGTTTGCTTTATGAGCGAGTGTTTGGTGCAGTTGAGTGGAGATGTATAGATGAGGGTCCGATATCGCTTTCCTTCATTCATCTTCCTCCAGCCGCCCCACATTAACACTTTTACAGCAGATTTGTGTGTCTGCATTTGTCCTGCTGGAGAAACCGCCTCCATCTTTATGGTTTTGGCAATAAAACTAATGGAGCAGCTTCTAATGTTCGACCCTTATTAGTCATTTTGGAGAGGTAAAACCGTGTAGAATAAGTCTGGGTTGTGTTTTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008687 False 757 lncRNA 0.45 4 42839850 42844948
TCONS_00008688 False 460 lncRNA 0.50 5 42839854 42883298
TCONS_00008689 False 596 lncRNA 0.48 3 42839856 42841508
TCONS_00008690 False 786 lncRNA 0.45 4 42839866 42844948
TCONS_00007180 True 630 lncRNA 0.48 3 42839867 42841508

Neighbor

gene id symbol gene type direction distance location
XLOC_003705 tdrd3 coding upstream 20120 42726712 ~ 42819730 (+)
XLOC_003706 zgc:194981 coding upstream 107410 42730639 ~ 42732440 (+)
XLOC_003704 il17rd coding upstream 117192 42641404 ~ 42722658 (+)
XLOC_003702 hesx1 coding upstream 204410 42600731 ~ 42635440 (+)
XLOC_003703 LO017916.1 coding upstream 214363 42625371 ~ 42625487 (+)
XLOC_003708 NA coding downstream 152260 43035558 ~ 43048021 (+)
XLOC_003709 CABZ01092982.1 coding downstream 161528 43044826 ~ 43044949 (+)
XLOC_003710 CABZ01080006.1 coding downstream 187585 43070883 ~ 43077341 (+)
XLOC_003711 foxg1b coding downstream 230810 43114108 ~ 43116249 (+)
XLOC_003712 CABZ01058277.1 coding downstream 411977 43295275 ~ 43297633 (+)
XLOC_003369 CR854846.2 misc upstream 26716768 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 30127854 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 30145587 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 30154251 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 30159822 12679732 ~ 12680028 (+)
XLOC_003700 FP067440.1 non-coding upstream 266868 42572242 ~ 42572982 (+)
XLOC_003693 CU138553.1 non-coding upstream 421476 42305089 ~ 42418374 (+)
XLOC_003692 NA non-coding upstream 707943 42127415 ~ 42131907 (+)
XLOC_003691 NA non-coding upstream 741559 42098047 ~ 42098291 (+)
XLOC_003717 NA non-coding downstream 649284 43532582 ~ 43535890 (+)

Expression


Co-expression Network