XLOC_037073 (wdr3)


Basic Information

Item Value
gene id XLOC_037073
gene name wdr3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 20853894 ~ 20872565 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072966
CTTTACAGGATGTCACACATGCGACTGGAAAGCATGTCGGAGTTCTCCCCATCCACTGAAGAAATACTTTCATAAGGACTGCAAATACAAAAGTCGTCTAATTCACAAAACCATGGGTTTAACTAAGCAGTACCTGCGCTATGTGGCGAGTGCTGTATTTGGAGTGATCGGCAGTCAGAAAGCCAATATCGCCTTTGTGACCCTCAGGGGTGGAGAGAAGGGTCGATATGTTGCAGTGGGGGCTTGTGAACATGTTTTCATATGGGATGTCCGCAAGGCTGAGAAGGTTCTCATACTTGAAGGTAAAAAGCATGAAGTGACGTATCTGTGCCCCTCTCCTGATGGTGTGCATATAGCTGTTGGTTATGAGGATGGAGGTGTGCGAATCTTCAGTTTGCTGAACGGTGAAAGCAACGTCTCCTTCAGTGGACACAAATCAGCCGTTTCAGTCATCAAATACGATGCTCTGGGAGCTCGTCTTGTCACTGGCTCAAGAgacacagatGTGATTGTGTGGGATGTCATCAATGAGTGCGGTCTGTACAGACTTAAAGGACACAAAGATGCCATCACACAAGTTTTGTTCTTGGAAAGTAAAAACCTGCTGATTACAAGTTCCAAGGACAGCTTTGTAAAGTGGTGGGATTTGGACACACAGCATTGTTTCAAGACGATGGTGGGACATCGCAGTGAGGTGTGGGGAATGGTGCTGTTAAACCAGGAGAACAGGTTGCTTACAGGGTCTGCTGACAGTGAGCTCAGAGCCTGGGACATTCAGGACATTGAGGAGGTTAAGGAATTGGGGGAACCACAGGAGAAGAAAGTCAGAACTCTTCTTGAGGATGAGGAGGAAGATGAAGAAGGACCCGATGAGGAGCCAGAAGAAAGGATTCTCAGCTGTAAGAAAGCCGGGTCTATTCTGAGAGAAGCCAGAGACAGAGTTGTATCATTGGTTACAGATGCCAAAGCTAAAGTTCTAGCCTGTCATGGCCTGGATGCTACCCTTGAAGTTTTTACTGTACTATCAGAGGAGGAAATCCAAAGAAAAATGGACAGAAAACTGAAGAAAGCCAAGAAAAAAGCCAAATCTCAAGAAGGAGGAGAGGAAGCTTCTGAACCGGTAGTGGAGAGGAAGTTGAAGGATGAAATCATGAAACTGGCAAACATAAGGGCGTCATCCAAGATCAGATCAATGGACTGCCTTTTGGTTCCTAACGGAGAGATGAAAGTTGTTCTTCTTCTGCAAAATAACACAGTGGAGACATACACGCTGAAGACTACAGAGAAGAATCCCACTGGGAATAAAACCTCTCGCCTCACACTGGGTGGTCACCGTTCAGATGTCAGGACAGTGGCCTTCAGCTCAGATAACATAGCAATCCTTTCTGCCTCAGGAGACACTGTCAAAGTGTGGAACAGGTCCACCTTGCAAGTTATTCGTACCATGGGATGCGAATATGCTCTCTGCTCGATATTTGTTCCTGGAGACAGACAGATTATCTTAGGAACAAAGAGTGGGAAAATTCAGATATTTGACCTGGCCTCAGGAAGCCTTCTAGAGACGACTGATGCTCATGAAGGAGCTCTTTGGTCCATGTGTCTCTCTCCAGACCAGAGAGGGATTGTAACCGGCGGTGCTGACAAGACTGTGAAATTCTGGGACTTTGAGCTCATAAAGGATGAGGACTCTATGATAAACAAGAGACTGACGGTGAAACACACGCGCACGCTGCAGTTAGATgaggatgtgttgtgtgttcgcTTCAGTCCTGACCAGAGGCTACTGGCCGTCTCTTTGCTCGACTGTACAGTCAAGATCTTTTACACAGACACGCTAAAGTTCTTCCTGTCGCTGTATGGACACAAACTGCCTGTTCTGTGCCTGGACATTTCACATGACAGCGCTTTAATAGCCACAGGCTCGGCTGACAGAAACGTGAAGATCTGGGGATTGGACTTTGGAGACTGTCATCGCTCCATGTTTGCTCATGACGACAGTGTCATGTTTCTTCAGTTTGTCCCTAAAACCCATCTGTTCTTCACCGCCGGAAAGGACAAAAAGATCAAGCAGTGGGACGCTGACAAGTTTGAGCACATCCAGACGTTGGAGGGTCATCATCGGGAGGTCTGGTGCCTGGCCATCAGCCCGAATGGAGATCACATTGTGTCCTCGTCTCATGATAAATCTCTCAGGCTGTGGGAGAGAACGAGGGAGCCTATTATCCTGGAGGAGGAGAAAGAGATGGAGAGGGAAGCAGAATTTGAGGAGTCATTGGCTAAAGGTGATGATCCTGTGGTTCCTGGAGAGACTAAAGGTGAAGCTGAGCCTGCTGGGAGAAAGACTGTTGAGACTGTGAAAGCTGCCGAGCGAATAATGGAGGCCATTGAGCTTTACAGAGAGGAAAGCAAAAACCTGGAGGAGCACAAAGCTGCTTGTGAGGCAGCGGGGAAAAAGTTACCACCTCTTAAGATGAACCCCATCCTTATGGCTTTTGGAAATATCTCACCTTCTCGATATGTTTTGGAGGTGATGAAGAAGGTTCGGTCCAGTGAGCTGGAGGTGTCTCTGCTGGTGCTGCCCTTTCCATATGTCCCTGATCTGCTGAAGCTCTTCAATGCTTATGTAAAGGAGGGTCTGGAGGTTGAGCTGGTTTGTCGCTGCCTCTTCTTCTTGCTCAGAGTCCACTTTGGTCAGATCACCAGTAATCAGATGCTGCTGTCTGTGATTGATGAGTTACGGGCCAACACGATCTCTAAAGTGCGAGAGATCAGGGATGTCCTGGGTTTCAACAGCGCTGGTCTTCAGTTCCTGCAGCGGGAGATTGAGAGCAGAGAAGATGTGACGTTCTTTGCTGATGCCACAGACCGCTTTGAAGAAAAGAGGAGAAAGAGGAGGAAACGGGAAAGAGTTATTCTCACAATCACATAACAACCAGGACAAAACTGACATGACGCTACTGCTGTGTGCTTTTACAGtcagcatgtatgtatgtattcattGTTCTTTTGTACTCGCCTCAAGTTCATAAAGGTGAATTTATCCACAAATCAACTTTAA
>TCONS_00072967
GTTCCAAGGACAGCTTTGTAAAGTGGTGGGATTTGGACACACAGCATTGTTTCAAGACGATGGTGGGACATCGCAGTGAGGTGTGGGGAATGGTGCTGTTAAACCAGGAGAACAGGTTGCTTACAGGGTCTGCTGACAGTGAGCTCAGAGCCTGGGACATTCAGGACATTGAGGAGGTTAAGGAATTGGGGGAACCACAGGAGAAGAAAGTCAGAACTCTTCTTGAGGATGAGGAGGAAGATGAAGAAGGACCCGATGAGGAGCCAGAAGAAAGGATTCTCAGCTGTAAGAAAGCCGGGTCTATTCTGAGAGAAGCCAGAGACAGAGTTGTATCATTGGTTACAGATGCCAAAGCTAAAGTTCTAGCCTGTCATGTAAGTATGAGTTATATATTCAGCTTTGTTAGCTTTTTCTTACCAAACACAATTCCACAAAGAGgaatttaaaaggatagtttacacaaaaatgtaaattcctactcacccttcacttgtcacaattctgttgagtttctttcttctgttgaacccaaaggAAGCTATACTGAAGAATTTTGGCCA
>TCONS_00072968
TCCAGGTTTCTGCTTCACTCTTTTTGGCTTTATTGTATTCTTTCTCTGTGTAACCCACAGGAGACTGACGGTGAAACACACGCGCACGCTGCAGTTAGATgaggatgtgttgtgtgttcgcTTCAGTCCTGACCAGAGGCTACTGGCCGTCTCTTTGCTCGACTGTACAGTCAAGATCTTTTACACAGACACGCTAAAGTTCTTCCTGTCGCTGTATGGACACAAACTGCCTGTTCTGTGCCTGGACATTTCACATGACAGCGCTTTAATAGCCACAGGCTCGGCTGACAGAAACGTGAAGATCTGGGGATTGGACTTTGGAGACTGTCATCGCTCCATGTTTGCTCATGACGACAGTGTCATGTTTCTTCAGTTTGTCCCTAAAACCCATCTGTTCTTCACCGCCGGAAAGGACAAAAAGATCAAGCAGTGGGACGCTGACAAGTTTGAGCACATCCAGACGTTGGAGGGTCATCATCGGGAGGTCTGGTGCCTGGCCATCAGCCCGAATGGAGATCACATTGTGTCCTCGTCTCATGATAAATCTCTCAGGCTGTGGGAGAGAACGAGGGAGCCTATTATCCTGGAGGAGGAGAAAGAGATGGAGAGGGAAGCAGAATTTGAGGAGTCATTGGCTAAAGGTGATGATCCTGTGGTTCCTGGAGAGACTAAAGGTGAAGCTGAGCCTGCTGGGAGAAAGACTGTTGAGACTGTGAAAGCTGCCGAGCGAATAATGGAGGCCATTGAGCTTTACAGAGAGGAAAGCAAAAACCTGGAGGAGCACAAAGCTGCTTGTGAGGCAGCGGGGAAAAA
>TCONS_00075090
TCCAGGTTTCTGCTTCACTCTTTTTGGCTTTATTGTATTCTTTCTCTGTGTAACCCACAGGAGACTGACGGTGAAACACACGCGCACGCTGCAGTTAGATgaggatgtgttgtgtgttcgcTTCAGTCCTGACCAGAGGCTACTGGCCGTCTCTTTGCTCGACTGTACAGTCAAGATCTTTTACACAGACACGCTAAAGTTCTTCCTGTCGCTGTATGGACACAAACTGCCTGTTCTGTGCCTGGACATTTCACATGACAGCGCTTTAATAGCCACAGGCTCGGCTGACAGAAACGTGAAGATCTGGGGATTGGACTTTGGAGACTGTCATCGCTCCATGTTTGCTCATGACGACAGTGTCATGTTTCTTCAGTTTGTCCCTAAAACCCATCTGTTCTTCACCGCCGGAAAGGACAAAAAGATCAAGCAGTGGGACGCTGACAAGTTTGAGCACATCCAGACGTTGGAGGGTCATCATCGGGAGGTCTGGTGCCTGGCCATCAGCCCGAATGGAGATCACATTGTGTCCTCGTCTCATGATAAATCTCTCAGGCTGTGGGAGAGAACGAGGGAGCCTATTATCCTGGAGGAGGAGAAAGAGATGGAGAGGGAAGCAGAATTTGAGGAGTCATTGGCTAAAGGTGATGATCCTGTGGTTCCTGGAGAGACTAAAGGTGAAGCTGAGCCTGCTGGGAGAAAGACTGTTGAGACTGTGAAAGCTGCCGAGCGAATAATGGAGGCCATTGAGCTTTACAGAGAGGAAAGCAAAAACCTGGAGGAGCACAAAGCTGCTTGTGAGGCAGCGGGGAAAAAGTTACCACCTCTTAAGATGAACCCCATCCTTATGGCTTTTGGAAATATCTCACCTTCTCGATATGTTTTGGAGGTGATGAAGAAGGTTCGGTCCAGTGAGCTGGAGGTGTCTCTGCTGGTGCTGCCCTTTCCATATGTCCCTGATCTGCTGAAGCTCTTCAATGCTTATGTAAAGGAGGGTCTGGAGGTTGAGCTGGTTTGTCGCTGCCTCTTCTTCTTGCTCAGGTGCTCATCTGGAGATGTTGCATTAACACACTTCAGTTTTCCTATGAAAAGCCTTTTATAGTGTAGTCCATTTGATAGCAAGTGCTCGACACATGCACACTAGAAAGATTCATCCTTGTCAAGTGTCTGCACTTCTCTTCAAAGGttgtgaataattaaaaagcagaGGCATTACATGCAAATAAACTGTCAATTTTGAGCTTTTTGTATTACAATAAAGGTTTTTTCTCTCCAATGGAAAAAAGACATCCATAA
>TCONS_00072969
GAGAGAACGAGGGAGCCTATTATCCTGGAGGAGGAGAAAGAGATGGAGAGGGAAGCAGAATTTGAGGAGTCATTGGCTAAAGGTGATGATCCTGTGGTTCCTGGAGAGACTAAAGGTGAAGCTGAGCCTGCTGGGAGAAAGACTGTTGAGACTGTGAAAGCTGCCGAGCGAATAATGGAGGCCATTGAGCTTTACAGAGAGGAAAGCAAAAACCTGGAGGAGCACAAAGCTGCTTGTGAGGCAGCGGGGAAAAAGTTACCACCTCTTAAGATGAACCCCATCCTTATGGCTTTTGGAAATATCTCACCTTCTCGATATGTTTTGGAGGTGATGAAGAAGGTTCGGTCCAGTGAGCTGGAGGTGTCTCTGCTGGTGCTGCCCTTTCCATATGTCCCTGATCTGCTGAAGCTCTTCAATGCTTATGTAAAGGAGGGTCTGGAGGTTGAGCTGGTTTGTCGCTGCCTCTTCTTCTTGCTCAGGTGCTCATCTGGAGATGTTGCATTAACACACTTCAGTTTTCCTATGAAAAGCCTTTTATAGTGTAGTCCATTTGATAGCAAGTGCTCGACACATGCACACTAGAAAGATTCATCCTTGTCAAGTGTCTGCACTTCTCTTCAAAGGttgtgaataattaaaaagcagaGGCATTACATGCAAATAAACTGTCAATTTTGAGCTTTTTGTATTACAATAAAGGTTTTTTCTCTCCAATGGAAAAAAGACATCCATAA
>TCONS_00072970
AAAGCTGCTTGTGAGGCAGCGGGGAAAAAGTTACCACCTCTTAAGATGAACCCCATCCTTATGGCTTTTGGAAATATCTCACCTTCTCGATATGTTTTGGAGGTGATGAAGAAGGTTCGGTCCTGGGTTTCAACAGCGCTGGTCTTCAGTTCCTGCAGCGGGAGATTGAGAGCAGAGAAGATGTGACGTTCTTTGCTGATGCCACAGACCGCTTTGAAGAAAAGAGGAGAAAGAGGAGGAAACGGGAAAGAGTTATTCTCACAATCACATAACAACCAGGACAAAACTGACATGACGCTACTGCTGTGTGCTTTTACAGtcagcatgtatgtatgtattcattGTTCTTTTGTACTCGCCTCAAGTTCATAAAGGTGAATTTATCCACAAATCAACTTTAA

Function

symbol description
wdr3 Predicted to enable snoRNA binding activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and retina. Human ortholog(s) of this gene implicated in thyroid gland papillary carcinoma. Orthologous to human WDR3 (WD repeat domain 3).

GO:

id name namespace
GO:0030490 maturation of SSU-rRNA biological_process
GO:0032040 small-subunit processome cellular_component
GO:0034388 Pwp2p-containing subcomplex of 90S preribosome cellular_component
GO:0030515 snoRNA binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-9830 Predicted to enable snoRNA binding activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and retina. Human ortholog(s) of this gene implicated in thyroid gland papillary carcinoma. Orthologous to human WDR3 (WD repeat domain 3).

Ensembl:

ensembl_id ENSDARG00000011079

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072966 False 3058 mRNA 0.47 27 20853894 20872565
TCONS_00072967 False 560 processed_transcript 0.43 4 20857720 20859493
TCONS_00072968 False 813 lncRNA 0.50 8 20863668 20869194
TCONS_00075090 False 1293 lncRNA 0.47 11 20863668 20871057
TCONS_00072969 False 734 lncRNA 0.44 7 20867269 20871057
TCONS_00072970 True 401 mRNA 0.43 4 20869166 20872565

Neighbor

gene id symbol gene type direction distance location
XLOC_037072 tent5c coding upstream 69847 20780813 ~ 20784047 (+)
XLOC_037071 man1a2 coding upstream 86121 20554178 ~ 20767773 (+)
XLOC_037070 trim45 coding upstream 314614 20526472 ~ 20539280 (+)
XLOC_037069 vtcn1 coding upstream 329221 20519846 ~ 20524673 (+)
XLOC_037068 parp4 coding upstream 351272 20483846 ~ 20502622 (+)
XLOC_037074 hao2 coding downstream 274297 21146862 ~ 21164617 (+)
XLOC_037075 si:rp71-68n21.9 coding downstream 292452 21165017 ~ 21176861 (+)
XLOC_037076 hsd3b1 coding downstream 321880 21194445 ~ 21200464 (+)
XLOC_037077 NA coding downstream 329707 21202272 ~ 21205472 (+)
XLOC_037078 pla1a coding downstream 342375 21214940 ~ 21226132 (+)
XLOC_037067 CR456628.1 non-coding upstream 417379 20433812 ~ 20436515 (+)
XLOC_037066 CR456628.2 non-coding upstream 461860 20386745 ~ 20392034 (+)
XLOC_037065 CR933734.2 non-coding upstream 1012839 19837383 ~ 19841055 (+)
XLOC_037064 CR933734.1 non-coding upstream 1030280 19821457 ~ 19823614 (+)
XLOC_037063 NA non-coding upstream 1043716 19798251 ~ 19810178 (+)
XLOC_037086 BX649266.2 non-coding downstream 623308 21495873 ~ 21496699 (+)
XLOC_037089 NA non-coding downstream 889131 21761696 ~ 21765735 (+)
XLOC_037095 CR536604.1 non-coding downstream 1111544 21984109 ~ 21985996 (+)

Expression


Co-expression Network