XLOC_037078 (pla1a)


Basic Information

Item Value
gene id XLOC_037078
gene name pla1a
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21214940 ~ 21226132 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072979
TGCTGACATGGTCAATAAAAGCACACCGGGAATGGAAGGAAAGGCCCTTCATCTTGCTTAATCGGATATTGTTGCATTTTTCTCATAACCAGGCATTGTGTAACAGATTTTGGTGGCTAATAAGTGGATTCCAGGCTTCTTAGGTTTTCTAGTTGAAGAACAGGAGCAAAATATTTGGTAAGAATGATTTTGCACCCGAACAAGAAACATCAGATTTCATACAGTTGATCAAGAAAATCATGGCTTGGAAATGGATCAAGGCATTTGTTTATTTGTCGGTGTGTGTCACTTCAGCTCTGGGTGATGATGAGGAAGCGTCTGCAAGCAAGTGTGCAGACTTCAACAACACCACCTGGCTGGAATACAGACAGGCCACCAAGCTTCAGGTTTAGTACCTTCTGTTGACCCGAAAGAATGCCAACTGTGCCAGTCTGTTCACACAAGACTGCCTTAACCACACCCAGAAACACACTGCTTACTTCAACTCGTCACTGCCCACCAAAGTCATTGTTCATGGATACAGGGCTCTAGGCAGTAAACCGTCCTGGGTGAGTGGTTTAGCTCAGGCTCTACTGAGAGAAGAGGATGTGAATGTTCTGGTGGTGGACTGGGTCTATGGAGCCTCCTTTGCTTATAACTTGGTGGTGGAGAACTACAAGGAAGTGGCAATTCAGATATCGGTGCTTATTAATCAGCTTACGaaATATGGAAGCACGCTGGAATCATTTCACTTTATTGGTGTGAGTCTTGGAGCACACGTGTCTGGATTCGTGGGGACCTTATTTCATGGCAAGCTGGGTCGAATCACAGGTTTGGATCCAGCAGGCCCGATGTTTAAGAGTGCTGATCCGTTTGACCGTTTGGATTCATCTGATGCCTTATTTGTTGAGGCCATTCACACTGATTCTGACTATTTTGGGATATCCATTCCTGTTGGGCATGTGGACTTCTTCTTAAATGGAGGAATGGATCAAGCTGGATGTGCTCGCTCAAGGTTTGCATCAATGTATGGGTATGTCATTTGTGACCACATGAGGGCTCTGCACGTCTACATGAGTGCCCTGAACGGCTCCTGTCCACTCATTGGTTTTCCCTGCTCCGGTTATGAGGAGTTTCTGGCAGGAAAATGCATCACCTGTGACGACCCCTTCAATGGCACGTGCCCACAGATAGGCTTGTTGAAGAACAGTGGGATAACAGCGACTCCCCTGCCAAATCAAGAGAAGGTTTATCTGCTGACCACTGCTTCAGGTCCATTCTGTGcacatcacATCCTTGTGGAGTTAAACGTTTCCCGTTTAGACAAAACTGCAGAGGTTCAGCTCATTCTGAAATCCATTGGACATCCTGAGACGGAGCTCAATCTCAAACTATATACAGACGAAACAAGGTATAAAACGGTGGCTGCACACCCTGAGCAGCTGTGTAAAATTGACTCAATGCAGCTGATAAACACTGGAGGTCGATTCTACAGACAAGGAGACATTCATTTTGAGTATATTTGCATCTCTGAAATCCCTCAAACCAGAGGGATGGATCCACTATGTGTAAAGAACATTCATATTGGACGTGGAGTACCATGGTCACATGACTTTGTACAGGTgtgctaaattaaaaaaacaacagcataaaaTCTGCTTTGAAGAGCATCTGCATTAACCAGCTTTTCAAGTCTTAAATTAGTTAAACTCTAAGCAAAGGTCACACACTTACACTTGGGCTGGGAAGCATTAAAGTTCTGCAACAAAGACTTAAACAGGATACAAGGGGACTGAAATGATTCAGTGttagatttatttattgtgttttcacaaaatgacacatttagcCCTAATATAATATCAAATATGATTTCTGATACTTTTGTTTTATCTGTGAGCTCTTCCTGagaaaatcagttttatttaaagagagagttcacccaaaaataaaagttctgttaccatttactcactttttcagGCCTGTTTGAGATTCTGACTTTTACTGAGAGCAAGAGAGATTTTGAAACCCTGAAATTAAAATTGACTTTCATTGGTAGTGACTTCAACAGCAaccagtttctaacatttttcaaaatctctTCTTGTGTATTCAATCAAGAAAAGACACTTATAAAGGTCTGGAACAACTTGATGGGCAGTAAATtccctttttgggtgaactgtccctttaatgcaaATTTTCTGTTCAGTTTTGTTAGATAACAATCAACAAGAGAAATATTGTGTATTATAAAAGACATTTACCATACCATAGCTATTCTGTGTGTTCATATGTGTACTGAAAGTACTGATGTTTGATCATTTGAAGTGGTACAACAACATTCAAGCAACATTTTATTACCCTCATTAGTGTTTGTAACTGCATACCTAATACGGTGCTAATTACTGCTTTATGGTGGCATCTTAAGAGGAATATCAAGTCACATTTTAACCCAGCACTTAACAGTTGGCCCCGTGAAAATACATTTTCACAAAATGGTCAGTCTCAATAACAAGATTCTGAAACATTTACTAGCATTCTAATATGATTAAACTCACACTTATGTAATAAATCTCTATCAATTTAATATCTTTCGACTGCTGAAgtgttaattttttaatttgtagTATTTAAACTTTGTCTCAGTTATTCCAAACAGACTTCCCTACAAAGGACACACTATTGCAAATAAACATAAATCAGCCATGTTGATCAATCACAGCAATGTGGAATCATATATAACACAGTATCTATCGGAAAAAACAGTGGTTTGGGAGGTTTTGTCCTGAAAGCAGTACATTTGCACATCCTTAAACTGTTCTGTGTGAGTGTGGTCGTATGAGAACAAACAGTTTTTGATGGGAGAAGTGATTCATCTTGACTCGTCGTCTCTACAGCTTTGGGGTGTCATTAGGGGCCAGTGGGGCACGTCCTCTTTGGTATCGAGGTGGAAAACGTCCTGGAGGATCGTCCTCTGTTAGATTTATGGAAAAGGtgacaaattaaaatataattgagAACACTGAAACAAACAACATAAACCTAATTACATGTTTCAAAACTAGTAGTTTTGGCATTGTTTTCGGTGGTGCAGGCTGTATTTCTGGATATGATTCATGAATCTCATTCCTTTGGAAACTGGCATGTGAAGGTCATATCTCAAATGACAGCAGCGCCCTGCTTCTCTCACAGCTGTCCCACTATTCAGTGCTCTGCAAAGCACAATCTGGCCCTAGCTGCAAAAGCCAAGCATTTGGAGAGGGGGGAGCACTGGATAAACAGACCTGGCATGTTTGGATCTCTGGATGTCCCAAAACACTTTGTTTATCATTCAGCCTCTGGCACAACATGTATTTGTCAATAAATAAAACCAGCATTGAAACAT

Function

symbol description
pla1a Predicted to enable lipase activity. Predicted to be involved in lipid catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in diencephalon; hindbrain; and midbrain. Orthologous to human PLA1A (phospholipase A1 member A).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0046872 metal ion binding molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016298 lipase activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism
ko04014 Ras signaling pathway

ZFIN:

id description
ZDB-GENE-030131-5949 Predicted to enable lipase activity. Predicted to be involved in lipid catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in diencephalon; hindbrain; and midbrain. Orthologous to human PLA1A (phospholipase A1 member A).

Ensembl:

ensembl_id ENSDARG00000102176

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072979 True 3370 processed_transcript 0.41 11 21214940 21226132

Neighbor

gene id symbol gene type direction distance location
XLOC_037077 NA coding upstream 9468 21202272 ~ 21205472 (+)
XLOC_037076 hsd3b1 coding upstream 14476 21194445 ~ 21200464 (+)
XLOC_037075 si:rp71-68n21.9 coding upstream 38079 21165017 ~ 21176861 (+)
XLOC_037074 hao2 coding upstream 50323 21146862 ~ 21164617 (+)
XLOC_037073 wdr3 coding upstream 342375 20853894 ~ 20872565 (+)
XLOC_037079 hcn5 coding downstream 17203 21243335 ~ 21257516 (+)
XLOC_037080 ska3 coding downstream 33525 21259657 ~ 21274664 (+)
XLOC_037081 lats2 coding downstream 51714 21277846 ~ 21299336 (+)
XLOC_037082 xpo4 coding downstream 80770 21306902 ~ 21357841 (+)
XLOC_037083 eef1akmt1 coding downstream 132809 21358941 ~ 21363501 (+)
XLOC_037067 CR456628.1 non-coding upstream 778425 20433812 ~ 20436515 (+)
XLOC_037066 CR456628.2 non-coding upstream 822906 20386745 ~ 20392034 (+)
XLOC_037065 CR933734.2 non-coding upstream 1373885 19837383 ~ 19841055 (+)
XLOC_037064 CR933734.1 non-coding upstream 1391326 19821457 ~ 19823614 (+)
XLOC_037086 BX649266.2 non-coding downstream 269741 21495873 ~ 21496699 (+)
XLOC_037089 NA non-coding downstream 535564 21761696 ~ 21765735 (+)
XLOC_037095 CR536604.1 non-coding downstream 757977 21984109 ~ 21985996 (+)
XLOC_037104 NA non-coding downstream 1086601 22312733 ~ 22313617 (+)
XLOC_037108 BX548053.3 non-coding downstream 1350813 22576945 ~ 22577059 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_09884586_09891558 PLA1A coding CI01000009 null 9884580 ~ 9891558 (-)