XLOC_003708


Basic Information

Item Value
gene id XLOC_003708
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43035558 ~ 43048021 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008691
ttttaatcgCAGGGCTTGTTTGGCCCATGAGGAAGTGTGAGCGGTGAACAGGCCAGAGGTCAGGATGACGACAGTAGCCGCAGAGTTCGAGCACATGGACATCCAGCAGCAGTACCAGGACAGTGTGAACAACCGCTGGGACGACGAGTGGGACAATGAGAACAGCTCCGCACGACTGTTCGAGCGCTCGCGCATCAAAGCACTCGCAGGTCA
>TCONS_00007181
TGGCAGCATCAGCCTGAACAACAGCTGAACAGGAAGAAGATGACGACAGTAGCCGCAGAGTTCGAGCACATGGACATCCAGCAGCAGTACCAGGACAGTGTGAACAACCGCTGGGACGACGAGTGGGACAATGAGAACAGCTCCGCACGACTGTTCGAGCGCTCGCGCATCAAAGCACTCGCAGaaatatttatatatactacATAA

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000112439

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008691 False 213 lncRNA 0.57 2 43035558 43045639
TCONS_00007181 True 207 mRNA 0.51 3 43043171 43048021

Neighbor

gene id symbol gene type direction distance location
XLOC_003707 NA coding upstream 152260 42839850 ~ 42883298 (+)
XLOC_003705 tdrd3 coding upstream 215828 42726712 ~ 42819730 (+)
XLOC_003706 zgc:194981 coding upstream 303118 42730639 ~ 42732440 (+)
XLOC_003704 il17rd coding upstream 312900 42641404 ~ 42722658 (+)
XLOC_003702 hesx1 coding upstream 400118 42600731 ~ 42635440 (+)
XLOC_003710 CABZ01080006.1 coding downstream 22862 43070883 ~ 43077341 (+)
XLOC_003711 foxg1b coding downstream 66087 43114108 ~ 43116249 (+)
XLOC_003712 CABZ01058277.1 coding downstream 247254 43295275 ~ 43297633 (+)
XLOC_003713 CU929458.1 coding downstream 315054 43363075 ~ 43368382 (+)
XLOC_003714 sult6b1 coding downstream 327305 43375326 ~ 43388063 (+)
XLOC_003369 CR854846.2 misc upstream 26912476 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 30323562 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 30341295 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 30349959 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 30355530 12679732 ~ 12680028 (+)
XLOC_003703 LO017916.1 non-coding upstream 410071 42625371 ~ 42625487 (+)
XLOC_003700 FP067440.1 non-coding upstream 462576 42572242 ~ 42572982 (+)
XLOC_003693 CU138553.1 non-coding upstream 617184 42305089 ~ 42418374 (+)
XLOC_003692 NA non-coding upstream 903651 42127415 ~ 42131907 (+)
XLOC_003717 NA non-coding downstream 484561 43532582 ~ 43535890 (+)
XLOC_003718 CABZ01073015.1 non-coding downstream 595137 43643158 ~ 43646674 (+)
XLOC_003722 NA non-coding downstream 763608 43811629 ~ 43817356 (+)

Expression


Co-expression Network