XLOC_037082 (xpo4)


Basic Information

Item Value
gene id XLOC_037082
gene name xpo4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21306902 ~ 21357841 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072991
TGCAGTGCATGGCGCGTCACTGAAGAACGACCATGATGGCGGCGGTCGGTGCACCAGAAGTGATTTCACAGCTGGAAAGCGCTGCCAAAGTTTTAATGGCACCGCCGTCCATGGTCAGCACAGAGCAGAGGCAGCATGCAGAGCACATATTCCTGTCCTTCAGGAAGTCAAAATCCCCCTTTGCTGTCTGCAAACACATCCTTGAGACGAGTAAAGTGGACTATGTGCTGTTCCAGGCCGCCACCGCCATTATGGAGGCCGTGGTACGAGAATGGATCCTTCTAGAAAAGAACAGCATTGAGTCGCTTAGAACATTCCTCCTCACCTATGTCTTACAGAGACCCAATCTGCAGAAATATGTTCGAGAGCAGATCCTGTTAGCAGTAGCAGTAATAGTAAAGAGAGGCTCCCTCGACAAATCCATCAACTGTAAGAGCATCTTCCTCGAGGTCAGCCAGCTCATCAGCAGCGGCAATCCCACAGTGCAAACATTGGCCTGCTCCATCCTGACAGCCCTGTTGAGTGAGTTCTCCAGCTCCAATAAGACCAGCAACATTGGCCTCAGTATGGAGTTTCACGGAAGCTGCAAGCGCATATTTCAGGAGGACGACCTCAGGCAGATCTTCATGCTCACTATGGAGGTCTTGCAGGAGTTCAGCCGGAGGGAGAACCTCAACGCTCAGATGTCCTGTGTGTTCCAGCGCTATCTTGCACTGGCTAATCAAGTGCTTAGCTGGAACTTTCTTCCACCCAATCTGGGGAGGCACTACATTGCCATGTTTGAAGCCACTCCAAATGTCATGCTCAAGCCCACAGAGTCCTGGAGGGAGTCTCTTCTAGACCACAGAGTCATGGACCTTTTCTTCACTGTGCACAGAAAGATCAGAGAGGACTCGGACATGGCGCAGGACTCTCTTCAGTGCCTGGCTCAGCTGGCCTCAATGCAAGGTCCCATCTTCCCAGATGAAAGTGCTCAGGTGACCTACCTGGCCCACCTGGTGGAAGGATTACTCAACATGATCAATGGTATTGAAATTGAGGACTCTGAGGCCGTGGGCATCTCTAACATCATCAGTAACCTCATCAGCACATTTCCTCGAAGTGTTTTGACTGCACTCCCAAATGAACTCTTCGCCTCTTTCATTAACTGCCTCACGCTTCTCACATGCTCCTTCGGTCGCAGCGCCGCCTTGGAGGAGGTGCTTGATAAGGATGACATGGTGTACATGGAGGCATATGATAAGCTGCTGGAGTCATGGCTGACGTTGGTGCAGGAGGACGAGCACTTCCCCCGGGGCTGTTTCGTCCAGCCGGCCGTGCAGGTCTTCAACTCCTATATCCAGTGTCACCTTGCTGCTCCCGACGGCACCAGAAACCTGACTGCAAATGGTGTCGCTTCTCATGAAGAGGAAGAAATAAACGAGTTGCAGGAGGACGACAGAGAGCTGTTCTCAGATCAGCTGGCCAGTATCGGCATGTTGGGCCGCATTGCTGCAGACCACTGTATACCTCTGCTCACAGGATTGTTGGAGGACCGAGTCACGCGGCTTCATGGGCAACTCCAGAGACACCAACAGCACCTCATGGCGGCCGCGGACCCTGATACGGTGGACAGAAAAGTTCTAGATGACCTTTACGAAGACATTCATTGGCTCATATTAGTGTCAGgctACCTCTTGGCTGATGACCCTCAGGGTGAGACCCCCCTAATACCTTCAGAAGTGATGGAGTATTCCATTAAACACTCAACAGAGGTTGACATCAACACTACACTGCAGCTCCTCGGCTCTCCAGGAGAAAAGGCCACTTCCATCCCAGGGTGCAACAGGACAGACTCTGTTATCAGGTTGTTATCAGCGGTGTTAAGGACATCAGAGGTTGAATCTCGGGCTACAAGAGCAAGTCTGACTCAACTCTTGAGTCCTCAGATGGGCAAAGACATCGTCTGGTTTCTCCGGCGCTGGGCAAAGACGTACCTACTGGTGGACGAGAAGCTCTATGGCCAAATCAGTATGCCTCTCAGCACAGCTTTTGGAGCAGACACTGAGGGAGCGCAGTGGATTGTTGGATATCTGCTGGAGAAGGTGATCAATAATCTGTCAGTGTGGAGCTCTGAGCCTGAGCTGGCCAATGACACCGTGGAGCTGCTGGTGACTCTGGtggagaagagagagagggcAAACATCGTGGTGCAGTGTGAAAACTGGTGGAGCTTGGCAAAGCAGTTTGCCAGTCGCAGTCCTCCATTGCACATGCTGTCCAGCACAGTCCAGCGCACGCTAATGAAGGCCCTGGTCCTGGGCGGCTTCGCTCACATGGATTCTGACACCAAACAGCAATACTGGGCCGAGGTACTTCATCCACTCCAGCAGCGCTTCCTGAACCTCATCAACCAGGAGAATTTTGCTCAGATCTGTCAAGAGGAAGCGGTGAAGCAGGAGATCGTGGCCACGTTGGAAGCTCTTTGTGGCATTGCTGAAGCCACGCAGATCGACAACGTGGCGTCTCTATTCAGCTTCCTCATGGACTTCCTGTCCAGCTGCATTGGCCTCATGGAGGTCTACAGGAACTCCCCTGAAACAGTCAACCTCATCATAGAGGTGTTTGTGGAAGTGGCCCACAAACAGATCTGCTACCTGGGAGAGACTAAGTCTATGAAGCTGTACGAGGTTTGCTTGACGCTGCTGCAGGTTTACTCCAAGAACAATTTGGGCCGCAAGAGACTGGATGTGGCCGCAGAAGAGGACCAGTACCAGGACCTTCTGCTCATCATGGAGCTCCTCACCAACCTGCTTTCCAAAGAGTTTATAGACTTTAGCGACACCGATGAGGTGTTTCGGGGGCAGGAGCAGAGCTCAGGTGCTGGACGAGCCGTATCGGCTGCTGATGTTGTGCTGTATGGGGTCAATATTGTGCTGCCCCTCATGTCTCAGGATTTGCTTAAGTTTCCCTCTCTGTGTAACCAGTATTATAAGCTCATCACCTTCATCTGTGAGATTTTCCCAGAGAAGATCCCTCAGCTGCCCGAGGAGCTCTTCAAGAGCCTCATGTGCTCCCTGGAGCTGGGAATGACCTCgatGAGCTCAGAGATCAGTCAGCTGTGTCTGGAGGCTTTGTCCCCATTGGCTGAACAGTGTGCCAAGACACAGGAAAAGGACACACCCCTATTTATTGCCACGAGGCATTTTCTTAAATTGGTGTTTGACATGCTCGTGCTGCAgaagcacaacactgagatgactGTAGCAGCTGGAGAAGCACTGTATACACTAGTGTGCCTTCATCAGgCGGAGTACTCGGAGCTGGTGGAGACGCTGCTGTCCAATCAGAGGGATGCTCTGATCTACCAGCGGCTGGCGGACGCGTTCAACAACCTCACTGCCAGCAGCACACCGCCAACAATGGACCGCAAGCAGAAGGTGGCCTTCCTCAAGAGCCTGGAGGAGTTCGTCGCCAACGTTGGAGGGCTCCTGTGTGTCAAATAAAGCAGTTCCTCCGGCACCTGTCCACTTCAGCTACCCCTCTCCAGCCCTCGTCCACACAGAGAAGCCTTTCACCATGCCAAACCATGGAGAAGCCGAGCGCCCGCCCGCTCGCCGCACAGGCCGGGACGCTCAGCCTCCAGAGAGGAGAGAGGCTGGCGAAGGCTGAGAGCAGCGACCCGCCACGAGCATCTCAAACATGTTTACTTCACCACTGAGAGGTCCTCAGATGAACATTCATGAAGTGCTGAGGGGTACTCTCTCTGAAAACGGACCCCTTAATCCCCTTTatactcactcaaacacacagtcCTTTGCAGACGCTTCTCCTCGAGTGCCTTTCGGTTTCTCATGGCTCAGATCCGGCAGTGTCCACAGAGACTAGTCGAACTGCGCTCACAGGATTGAGCCATGGATGCCATGAAAAGAAAAAGCCTTTTCCAGTGGGACTTGGATTGCAGGAAGGCCCtttcgggaaaaaaaaaaaccaaatcaCTTTCGTGTGTAAGggtgtatatatattttcaaaagcagacaaaaatgaaagtgtttaaaaGGACTGAGCAGTTTTTATAAGACTATAGCTGACGACTTTCTGACTTTTTTATGACTTCACTGAAGGAAAAGGGGCTTGTTTGAATTCTTcattttgattgatttgattgattgtaGTTTTACTCTTTCGCCGTTGTCATTTTGCCCTGATAACAGCCAGCAGTATAACTCAAAGGGTTTTCAACATAGCTGACCCGATACGATGGGTGTTTCCACATGATCGCCTGTTGCTCCTGTTggttagttgttgttttttttagaccATAATGTCAATGATGTTCATCTTACATTAGCGCACACACAGTTGTGGAGCAGTCAAAGTTGCTGTAGCAATAAAATACCAAAAACGATGATGGAGGGATGTCTGCTGTTTTATTCAGGGCATTTGATGGTCTTTATTTCCATTGTTCAAAGCACTAATTGTTATTTTGGAATGCCTGAAATGATCTGTAAAGTGTATATAAACTTGATATAAAAGCCGA
>TCONS_00072992
ATGATGGCGGCGGTCGGTGCACCAGAAGTGATTTCACAGCTGGAAAGCGCTGCCAAAGTTTTAATGGCACCGCCGTCCATGGTCAGCACAGAGCAGAGGCAGCATGCAGAGCACATATTCCTGTCCTTCAGGAAGTCAAAATCCCCCTTTGCTGTCTGCAAACACATCCTTGAGACGAGTAAAGTGGACTATGTGCTGTTCCAGGCCGCCACCGCCATTATGGAGGCCGTGGTACGAGAATGGATCCTTCTAGAAAAGAACAGCATTGAGTCGCTTAGAACATTCCTCCTCACCTATGTCTTACAGAGACCCAATCTGCAGAAATATGTTCGAGAGCAGATCCTGTTAGCAGTAGCAGTAATAGTAAAGAGAGGCTCCCTCGACAAATCCATCAACTGTAAGAGCATCTTCCTCGAGGTCAGCCAGCTCATCAGCAGCGGCAATCCCACAGTGCAAACATTGGCCTGCTCCATCCTGACAGCCCTGTTGAGTGAGTTCTCCAGCTCCAATAAGACCAGCAACATTGGCCTCAGTATGGAGTTTCACGGAAGCTGCAAGCGCATATTTCAGGAGGACGACCTCAGGCAGATCTTCATGCTCACTATGGAGGTCTTGCAGGAGTTCAGCCGGAGGGAGAACCTCAACGCTCAGATGTCCTGTGTGTTCCAGCGCTATCTTGCACTGGCTAATCAAGTGCTTAGCTGGAACTTTCTTCCACCCAATCTGGGGAGGCACTACATTGCCATGTTTGAAGCCACTCCAAATGTCATGCTCAAGCCCACAGAGTCCTGGAGGGAGTCTCTTCTAGACCACAGAGTCATGGACCTTTTCTTCACTGTGCACAGAAAGATCAGAGAGGACTCGGACATGGCGCAGGACTCTCTTCAGTGCCTGGCTCAGCTGGCCTCAATGCAAGGTCCCATCTTCCCAGATGAAAGTGCTCAGGTGACCTACCTGGCCCACCTGGTGGAAGGATTACTCAACATGATCAATGGTATTGAAATTGAGGACTCTGAGGCCGTGGGCATCTCTAACATCATCAGTAACCTCATCAGCACATTTCCTCGAAGTGTTTTGACTGCACTCCCAAATGAACTCTTCGCCTCTTTCATTAACTGCCTCACGCTTCTCACATGCTCCTTCGGTCGCAGCGCCGCCTTGGAGGAGGTGCTTGATAAGGATGACATGGTGTACATGGAGGCATATGATAAGCTGCTGGAGTCATGGCTGACGTTGGTGCAGGAGGACGAGCACTTCCCCCGGGGCTGTTTCGTCCAGCCGGCCGTGCAGGTCTTCAACTCCTATATCCAGTGTCACCTTGCTGCTCCCGACGGCACCAGAAACCTGACTGCAAATGGTGTCGCTTCTCATGAAGAGGAAGAAATAAACGAGTTGCAGGAGGACGACAGAGAGCTGTTCTCAGATCAGCTGGCCAGTATCGGCATGTTGGGCCGCATTGCTGCAGACCACTGTATACCTCTGCTCACAGGATTGTTGGAGGACCGAGTCACGCGGCTTCATGGGCAACTCCAGAGACACCAACAGCACCTCATGGCGGCCGCGGACCCTGATACGGTGGACAGAAAAGTTCTAGATGACCTTTACGAAGACATTCATTGGCTCATATTAGTGTCAGgctACCTCTTGGCTGATGACCCTCAGGGTGAGACCCCCCTAATACCTTCAGAAGTGATGGAGTATTCCATTAAACACTCAACAGAGGTTGACATCAACACTACACTGCAGCTCCTCGGCTCTCCAGGAGAAAAGGCCACTTCCATCCCAGGGTGCAACAGGACAGACTCTGTTATCAGGTTGTTATCAGCGGTGTTAAGGACATCAGAGGTTGAATCTCGGGCTACAAGAGCAAGTCTGACTCAACTCTTGAGTCCTCAGATGGGCAAAGACATCGTCTGGTTTCTCCGGCGCTGGGCAAAGACGTACCTACTGGTGGACGAGAAGCTCTATGGCCAAATCAGTATGCCTCTCAGCACAGCTTTTGGAGCAGACACTGAGGGAGCGCAGTGGATTGTTGGATATCTGCTGGAGAAGGTGATCAATAATCTGTCAGTGTGGAGCTCTGAGCCTGAGCTGGCCAATGACACCGTGGAGCTGCTGGTGACTCTGGtggagaagagagagagggcAAACATCGTGGTGCAGTGTGAAAACTGGTGGAGCTTGGCAAAGCAGTTTGCCAGTCGCAGTCCTCCATTGCACATGCTGTCCAGCACAGTCCAGCGCACGCTAATGAAGGCCCTGGTCCTGGGCGGCTTCGCTCACATGGATTCTGACACCAAACAGCAATACTGGGCCGAGGTACTTCATCCACTCCAGCAGCGCTTCCTGAACCTCATCAACCAGGAGAATTTTGCTCAGATCTGTCAAGAGGAAGCGGTGAAGCAGGAGATCGTGGCCACGTTGGAAGCTCTTTGTGGCATTGCTGAAGCCACGCAGATCGACAACGTGGCGTCTCTATTCAGCTTCCTCATGGACTTCCTGTCCAGCTGCATTGGCCTCATGGAGGTCTACAGGAACTCCCCTGAAACAGTCAACCTCATCATAGAGGTGTTTGTGGAAGTGGCCCACAAACAGATCTGCTACCTGGGAGAGACTAAGTCTATGAAGCTGTACGAGGTTTGCTTGACGCTGCTGCAGGTTTACTCCAAGAACAATTTGGGCCGCAAGAGACTGGATGTGGCCGCAGAAGAGGACCAGTACCAGGACCTTCTGCTCATCATGGAGCTCCTCACCAACCTGCTTTCCAAAGAGTTTATAGACTTTAGCGACACCGATGAGGTGTTTCGGGGGCAGGAGCAGAGCTCAGGTGCTGGACGAGCCGTATCGGCTGCTGATGTTGTGCTGTATGGGGTCAATATTGTGCTGCCCCTCATGTCTCAGGATTTGCTTAAGTTTCCCTCTCTGTGTAACCAGTATTATAAGCTCATCACCTTCATCTGTGAGATTTTCCCAGAGAAGATCCCTCAGCTGCCCGAGGAGCTCTTCAAGAGCCTCATGTGCTCCCTGGAGCTGGGAATGACCTCgatGAGCTCAGAGATCAGTCAGCTGTGTCTGGAGGCTTTGTCCCCATTGGCTGAACAGTGTGCCAAGACACAGGAAAAGGACACACCCCTATTTATTGCCACGAGGCATTTTCTTAAATTGGTGTTTGACATGCTCGTGCTGCAgaagcacaacactgagatgactGTAGCAGCTGGAGAAGCACTGTATACACTAGTGTGCCTTCATCAGgCGGAGTACTCGGAGCTGGTGGAGACGCTGCTGTCCAATCAGAGGGATGCTCTGATCTACCAGCGGCTGGCGGACGCGTTCAACAACCTCACTGCCAGCAGCACACCGCCAACAATGGACCGCAAGCAGAAGGTGGCCTTCCTCAAGAGCCTGGAGGAGTTCGTCGCCAACGTTGGAGGGCTCCTGTGTGTCAAATAA
>TCONS_00072993
ttgttgagATTGTCAAACGTTGAATAAAAATTCACACtttaaagcacttcatgggatcTTTAACATGCTTTTATTTAGCTGCTCTTGTcagttgttagtttttatttatttatttattttttataaatgtgtgctACTGTTCCTAATCTCTGTTCTCCTATGTTCAGTTTCCCTCTCTGTGTAACCAGTATTATAAGCTCATCACCTTCATCTGTGAGATTTTCCCAGAGAAGATCCCTCAGCTGCCCGAGGAGCTCTTCAAGAGCCTCATGTGCTCCCTGGAGCTGGGAATGACCTCgatGAGCTCAGAGATCAGTCAGCTGTGTCTGGAGGCTTTGTCCCCATTGGCTGAACAGTGTGCCAAGACACAGGAAAAGGACACACCCCTATTTATTGCCACGAGGCATTTTCTTAAATTGGTGTTTGACATGCTCGTGCTGCAgaagcacaacactgagatgactGTAGCAGCTGGAGAAGCACTGTATACACTAGTGTGCCTTCATCAGgCGGAGTACTCGGAGCTGGTGGAGACGCTGCTGTCCAATCAGAGGGATGCTCTGATCTACCAGCGGCTGGCGGACGCGTTCAACAACCTCACTGCCAGCAGCACACCGCCAACAATGGACCGCAAGCAGAAGGTGGCCTTCCTCAAGAGCCTGGAGGAGTTCGTCGCCAACGTTGGAGGGCTCCTGTGTGTCAAATAAAGCAGTTCCTCC

Function

symbol description
xpo4 Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Is expressed in several structures, including adaxial cell; alar plate midbrain region; eye; midbrain; and musculature system. Orthologous to human XPO4 (exportin 4).

GO:

id name namespace
GO:0006611 protein export from nucleus biological_process
GO:0015031 protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005643 nuclear pore cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005049 nuclear export signal receptor activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport

ZFIN:

id description
ZDB-GENE-030131-3062 Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Is expressed in several structures, including adaxial cell; alar plate midbrain region; eye; midbrain; and musculature system. Orthologous to human XPO4 (exportin 4).

Ensembl:

ensembl_id ENSDARG00000010281

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072991 False 4519 mRNA 0.51 23 21306902 21357841
TCONS_00072992 False 3453 mRNA 0.52 23 21306934 21356807
TCONS_00072993 True 719 lncRNA 0.47 4 21353068 21356819

Neighbor

gene id symbol gene type direction distance location
XLOC_037081 lats2 coding upstream 7566 21277846 ~ 21299336 (+)
XLOC_037080 ska3 coding upstream 32238 21259657 ~ 21274664 (+)
XLOC_037079 hcn5 coding upstream 49386 21243335 ~ 21257516 (+)
XLOC_037078 pla1a coding upstream 80770 21214940 ~ 21226132 (+)
XLOC_037077 NA coding upstream 101430 21202272 ~ 21205472 (+)
XLOC_037083 eef1akmt1 coding downstream 1100 21358941 ~ 21363501 (+)
XLOC_037084 cryl1 coding downstream 25779 21383620 ~ 21405066 (+)
XLOC_037085 gja3 coding downstream 50146 21407987 ~ 21409466 (+)
XLOC_037086 BX649266.2 coding downstream 138032 21495873 ~ 21496699 (+)
XLOC_037087 arhgef7a coding downstream 178044 21535885 ~ 21755910 (+)
XLOC_037067 CR456628.1 non-coding upstream 870387 20433812 ~ 20436515 (+)
XLOC_037066 CR456628.2 non-coding upstream 914868 20386745 ~ 20392034 (+)
XLOC_037065 CR933734.2 non-coding upstream 1465847 19837383 ~ 19841055 (+)
XLOC_037089 NA non-coding downstream 403855 21761696 ~ 21765735 (+)
XLOC_037095 CR536604.1 non-coding downstream 626268 21984109 ~ 21985996 (+)
XLOC_037104 NA non-coding downstream 954892 22312733 ~ 22313617 (+)
XLOC_037108 BX548053.3 non-coding downstream 1219104 22576945 ~ 22577059 (+)

Expression


Co-expression Network