Gene
RNA
| Item | Value |
|---|---|
| gene id | G1776653 |
| gene name | LOC106581902 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 12626629 ~ 12638963 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2034489 | False | 1137 | lncRNA | 0.42 | 2 | 12626629 | 12638963 |
| TU2034486 | False | 1129 | lncRNA | 0.40 | 2 | 12627376 | 12628610 |
| TU2034488 | False | 834 | lncRNA | 0.44 | 5 | 12627376 | 12635950 |
| TU2034490 | True | 390 | lncRNA | 0.37 | 2 | 12627376 | 12638963 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| slitrk5b | LOC106581907 | coding | upstream | 66151 | 12553080 ~ 12560478 (+) |
| LOC110501408 | LOC106581908 | coding | upstream | 92331 | 12514243 ~ 12534298 (+) |
| LOC110501406 | LOC106581909 | coding | upstream | 144942 | 12477105 ~ 12481687 (+) |
| LOC110502047 | NA | coding | upstream | 216370 | 12403875 ~ 12410259 (+) |
| cog3 | cog3 | coding | upstream | 257573 | 12356825 ~ 12369056 (+) |
| LOC110501415 | LOC106581898 | coding | downstream | 107675 | 12746638 ~ 12753552 (+) |
| LOC118936396 | LOC106581898 | coding | downstream | 107862 | 12746825 ~ 12747903 (+) |
| LOC110501417 | LOC106581898 | coding | downstream | 117389 | 12756352 ~ 12787590 (+) |
| LOC110501420 | tmem50b | coding | downstream | 176248 | 12815211 ~ 12829907 (+) |
| LOC110502111 | LOC106581720 | coding | downstream | 350579 | 12989542 ~ 12994640 (+) |
| G1776665 | NA | non-coding | upstream | 6681 | 12619148 ~ 12619948 (+) |
| G1776537 | LOC106581911 | non-coding | upstream | 199853 | 12423022 ~ 12426776 (+) |
| G1776226 | NA | non-coding | upstream | 520698 | 12104010 ~ 12105931 (+) |
| G1776336 | NA | non-coding | upstream | 554374 | 12071997 ~ 12072255 (+) |
| G1776329 | NA | non-coding | upstream | 563471 | 12062844 ~ 12063158 (+) |
| G1776682 | NA | non-coding | downstream | 5737 | 12644700 ~ 12663992 (+) |
| G1776695 | NA | non-coding | downstream | 26826 | 12665789 ~ 12667649 (+) |
| G1776696 | NA | non-coding | downstream | 30501 | 12669464 ~ 12671587 (+) |
| G1776709 | NA | non-coding | downstream | 51099 | 12690062 ~ 12761001 (+) |
| G1776749 | NA | non-coding | downstream | 150698 | 12789661 ~ 12789868 (+) |
| LOC110501399 | LOC106581914 | other | upstream | 376621 | 12202156 ~ 12270054 (+) |
| G1776230 | NA | other | upstream | 594289 | 12031281 ~ 12032340 (+) |
| LOC110501387 | LOC106581925 | other | upstream | 772227 | 11852404 ~ 11863661 (+) |
| G1775962 | LOC100286503 | other | upstream | 1104239 | 11520723 ~ 11522390 (+) |
| G1775959 | NA | other | upstream | 1110216 | 11511965 ~ 11516413 (+) |
| G1779170 | NA | other | downstream | 1440534 | 14079497 ~ 14079739 (+) |
| G1779636 | NA | other | downstream | 2263832 | 14902795 ~ 14903260 (+) |
| G1780353 | NA | other | downstream | 2399136 | 15038099 ~ 15043643 (+) |
