Item | Value |
---|---|
gene id | G1776709 |
gene name | NA |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048586.1 |
NCBI id | CM023240.2 |
chromosome length | 52474311 |
location | 12690062 ~ 12761001 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
PREDICTED: ribosomal RNA processing protein 1 homolog B-like isoform X1 |
id | description |
---|
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU2034574 | False | 803 | lncRNA | 0.50 | 6 | 12690062 | 12748664 |
TU2034565 | False | 2430 | TUCP | 0.48 | 8 | 12746674 | 12758196 |
TU2034575 | False | 1902 | TUCP | 0.52 | 10 | 12747352 | 12758196 |
TU2034581 | False | 461 | lncRNA | 0.53 | 3 | 12748756 | 12749779 |
TU2034579 | False | 771 | TUCP | 0.55 | 2 | 12750308 | 12758196 |
TU2034580 | False | 771 | TUCP | 0.55 | 2 | 12750308 | 12758196 |
TU2034569 | False | 588 | lncRNA | 0.47 | 2 | 12752529 | 12760244 |
TU2034557 | False | 656 | lncRNA | 0.42 | 2 | 12752864 | 12760638 |
TU2034570 | False | 656 | lncRNA | 0.42 | 2 | 12752864 | 12760638 |
TU2034571 | False | 647 | lncRNA | 0.41 | 2 | 12752864 | 12760638 |
TU2034573 | False | 673 | lncRNA | 0.42 | 2 | 12752864 | 12760638 |
TU2034577 | False | 1019 | lncRNA | 0.41 | 2 | 12752864 | 12761001 |
TU2034558 | False | 793 | lncRNA | 0.38 | 2 | 12753578 | 12754446 |
TU2034563 | True | 953 | TUCP | 0.54 | 2 | 12756812 | 12758196 |
12,650,000
12,660,000
12,670,000
12,680,000
12,690,000
12,700,000
12,710,000
12,720,000
12,730,000
12,740,000
12,750,000
12,760,000
12,770,000
12,780,000
12,790,000
NC_048586.1
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
slitrk5b | LOC106581907 | coding | upstream | 129584 | 12553080 ~ 12560478 (+) |
LOC110501408 | LOC106581908 | coding | upstream | 155764 | 12514243 ~ 12534298 (+) |
LOC110501406 | LOC106581909 | coding | upstream | 208375 | 12477105 ~ 12481687 (+) |
LOC110502047 | NA | coding | upstream | 279803 | 12403875 ~ 12410259 (+) |
cog3 | cog3 | coding | upstream | 321006 | 12356825 ~ 12369056 (+) |
LOC110501420 | tmem50b | coding | downstream | 54210 | 12815211 ~ 12829907 (+) |
LOC110502111 | LOC106581720 | coding | downstream | 228541 | 12989542 ~ 12994640 (+) |
arglu1a | LOC106586866 | coding | downstream | 374775 | 13135776 ~ 13142953 (+) |
efnb2a | efnb2 | coding | downstream | 385892 | 13146893 ~ 13173023 (+) |
gtpbp8 | gtpbp8 | coding | downstream | 1324960 | 14085961 ~ 14108677 (+) |
G1776696 | NA | non-coding | upstream | 18475 | 12669464 ~ 12671587 (+) |
G1776695 | NA | non-coding | upstream | 22413 | 12665789 ~ 12667649 (+) |
G1776682 | NA | non-coding | upstream | 26070 | 12644700 ~ 12663992 (+) |
G1776653 | LOC106581902 | non-coding | upstream | 51099 | 12626629 ~ 12638963 (+) |
G1776665 | NA | non-coding | upstream | 70114 | 12619148 ~ 12619948 (+) |
G1776749 | NA | non-coding | downstream | 28660 | 12789661 ~ 12789868 (+) |
G1776755 | NA | non-coding | downstream | 37201 | 12798202 ~ 12798418 (+) |
G1776756 | NA | non-coding | downstream | 37520 | 12798521 ~ 12798721 (+) |
G1776758 | NA | non-coding | downstream | 39910 | 12800911 ~ 12801194 (+) |
G1776792 | LOC106581896 | non-coding | downstream | 91945 | 12852946 ~ 12856416 (+) |
LOC110501399 | LOC106581914 | other | upstream | 440054 | 12202156 ~ 12270054 (+) |
G1776230 | NA | other | upstream | 657722 | 12031281 ~ 12032340 (+) |
LOC110501387 | LOC106581925 | other | upstream | 835660 | 11852404 ~ 11863661 (+) |
G1775962 | LOC100286503 | other | upstream | 1167672 | 11520723 ~ 11522390 (+) |
G1775959 | NA | other | upstream | 1173649 | 11511965 ~ 11516413 (+) |
LOC110501417 | LOC106581898 | other | downstream | 936 | 12756352 ~ 12787590 (+) |
G1779170 | NA | other | downstream | 1318496 | 14079497 ~ 14079739 (+) |
G1779636 | NA | other | downstream | 2141794 | 14902795 ~ 14903260 (+) |
G1780353 | NA | other | downstream | 2277098 | 15038099 ~ 15043643 (+) |
G1780491 | NA | other | downstream | 2530361 | 15291362 ~ 15347666 (+) |