XLOC_037089


Basic Information

Item Value
gene id XLOC_037089
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21761696 ~ 21765735 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074895
ATCTGGTCCAATTCCAATAATTATGTTGTCCAATAATAatgttcaataattattttccctGCCGTATCATATTTCAGCTTACTCTGATATCTAATTATATGAATGTTCAAAAAAATGTCAAACGCCTCTCCAAAATGTAGCGAGGTGAAATGTAAAAAACGGAATTACACCAACTTTCTTATTTTTGAAAGGTTTATGTtttatcattaaaatacatttttcatttattcattcattcattcttttcttgtcggcttagtccctttattaatcctaggtcgccacagaggaatgaaccgccaacttatccagcaagtttttacgcagcggatgcccttctattcgcaacccatctatgggaaaaaATACATTTCTCTATTGAGAAAATCAATAGGATTTCTACTTTCCGGAAGTCTACATACTGATCTTTTTGGAACTGAAGTCACAAAGAGAAAGCCTTTCCTTTCTGTCCACATGATTGTGAGCTTGTCCATCAGCACGTGTGACACAGGGAGGCTCCGCTTCTGTAGCTTCACCCTGCTGTCCATCACACCAGCCTGGAAGTGCTTCCTTCCTCGTGCTCATCAGAGTCCTCCGACATACTTTCATCCCAGATCAGATGACCTCCGAGGTTTATCAAGAGCCGCGCCAGCAGGATGGATGCGGTTTATCCAGGTACAGAACATGAATGTCCCAGTGACGGGGACTCATGTCTCACCTCTTTCCCTGTGGCGACTGTCCTTCCTGCTACAGACACAAGCTTCCtcttctgctgctgctttgaGCCATTTGTTGAGGGAATGCAGCAATTGTCGCCTCTGGGATGTGTAATGTCCTAGTGTCACATATATTCCTGCTGTCTGCTAGTGATTTCCAATAGAGCAACAAACACTCAGGTGCACTTAAAGGGATAGGTcactaaaaactgaaaaatgttgttatttacacacacacacacacacgttggtTGTGGACTGCATTGACTTTCATTATGTGAACAGTTCTTTACAGTATTCTCCTTTTGGTTCCTCAATTATGGCTGATAAATAATTATAGACTTCTGTGCTAATCACAGTTTGTCCATAACAAACACCATGTTCGAGCACAAGGGTGTCTATCGGTGCACATGACACCAGGACACCTTAGGGCGGAGGTCGATGATCGACTTTGTGGTTGTATCATCTGATCTT
>TCONS_00075100
gcagcggatgcccttctattcgcaacccatctatgggaaaaaATACATTTCTCTATTGAGAAAATCAATAGGATTTCTACTTTCCGGAAGTCTACATACTGATCTTTTTGGAACTGAAGTCACAAAGAGAAAGCCTTTCCTTTCTGTCCACATGATTGTGAGCTTGTCCATCAGCACGTGTGACACAGGGAGGCTCCGCTTCTGTAGCTTCACCCTGGTAAACGAGAGTGTGTGTCTTGCAGTATAGCTCAGTGGGTGTGGGCGGTTTGTAACTTAACCTCTTGCTCCTCTTAATCACTAGCTGTCCATCACACCAGCCTGGAAGTGCTTCCTTCCTCGTGCTCATCAGAGTCCTCCGACATACTTTCATCCCAGATCAGATGACCTCCGAGGTTTATCAAGAGCCGCGCCAGCAGGATGGATGCGGTTTATCCAGAAGCCGATGGTGGAGTTAATTGATTTGGAAGATGCTGCTTTAACAGCCGTCCTCGTTGATCTTGATAACGGTGCGGGCCGATACCTAACGAGGTGCTGCATTAATTGTCACCCTCCAATGACAGCGTTCATTTGCTGTTTAACTGGTAGATTGATGTATTGATTGAGTTGAGCCTGGGAATGAAGCTGAGCCACTGTTCTCAGTCTGGGGCTCTTGAAGGACTTCAGCGATGAGACACTGAGGCTGTTGGGACTGTCAGCGTGCACGAGGGAGGTCTGCTCTGAATCTGACTGCTAATAAAGCGCCCTCATTCAAGAAGTCATCGGCTGTCGCTGGAACTCTAGGCTGCTTTTCTTATGAGGAAGGCTGTGCTCCTCTTTTCTGCCAGCGTTGGACGAGGTGGGGGAGACTTGTAAACCGTGAGCAATAGGGGGTCGATCTCCCCAATAGATGTCACGGATTTTAACGAGCAGTTTCAGCCCATCTCAAAAGACACGGAGCACAGCGGGGCGAACAAAGATGGTCTTTGTCTGGGtgtatggatgggtgggtgggttgtGAGatctgcgtttgtgtgtgtgcacttaaGGGAAAGTGAAGGGGTGTGTGTGCAGTGTTCCACTACTGTTACCTTCCAGGGGCTCTTAACACTGGGTATCTTCAGGAACCAAAGAGGTCACGAAAAATTCATAAGGTTGGAGATTTGAGCAGGATTGTTTTTACTGACGTTGCACTCTCTCTATGGTTGAAGGCTTGAACATGAATTATGAGTTCCATCTTAGCATAGGCACTGAATTTACTGTCTGGCTATTGCTGAA

Function

GO:

id name namespace
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0019441 tryptophan catabolic process to kynurenine biological_process
GO:0004833 tryptophan 2,3-dioxygenase activity molecular_function
GO:0005153 interleukin-8 receptor binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074895 False 1190 lncRNA 0.42 2 21761696 21762969
TCONS_00075100 True 1254 lncRNA 0.48 2 21762019 21765735

Neighbor

gene id symbol gene type direction distance location
XLOC_037087 arhgef7a coding upstream 5786 21535885 ~ 21755910 (+)
XLOC_037088 sox1a coding upstream 37035 21722733 ~ 21724661 (+)
XLOC_037086 BX649266.2 coding upstream 264997 21495873 ~ 21496699 (+)
XLOC_037085 gja3 coding upstream 352230 21407987 ~ 21409466 (+)
XLOC_037084 cryl1 coding upstream 356630 21383620 ~ 21405066 (+)
XLOC_037090 rev1 coding downstream 27830 21793565 ~ 21816606 (+)
XLOC_037091 txndc9 coding downstream 53347 21819082 ~ 21824647 (+)
XLOC_037092 zgc:162944 coding downstream 60989 21826724 ~ 21831588 (+)
XLOC_037093 kctd12.1 coding downstream 78180 21843915 ~ 21845783 (+)
XLOC_037094 si:dkey-57a22.11 coding downstream 211648 21977383 ~ 21983659 (+)
XLOC_037078 pla1a non-coding upstream 535564 21214940 ~ 21226132 (+)
XLOC_037077 NA non-coding upstream 556224 21202272 ~ 21205472 (+)
XLOC_037067 CR456628.1 non-coding upstream 1325181 20433812 ~ 20436515 (+)
XLOC_037066 CR456628.2 non-coding upstream 1369662 20386745 ~ 20392034 (+)
XLOC_037095 CR536604.1 non-coding downstream 218374 21984109 ~ 21985996 (+)
XLOC_037104 NA non-coding downstream 546998 22312733 ~ 22313617 (+)
XLOC_037108 BX548053.3 non-coding downstream 811210 22576945 ~ 22577059 (+)
XLOC_037110 NA non-coding downstream 876651 22642386 ~ 22642685 (+)
XLOC_037116 NA non-coding downstream 1223206 22988941 ~ 22998060 (+)

Expression


Co-expression Network