XLOC_037091 (txndc9)


Basic Information

Item Value
gene id XLOC_037091
gene name txndc9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21819082 ~ 21824647 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073012
ttaaataataaattttgtacATTCTGAAATACGTCACAAAGCGCTACGTGTGAGTGACGTAATCAGTCGACGCCTTTGCGTGAAGCCCTGCGTCAGTGTGCCGCCTTTCAGAAATTATACAGCGTTGCAGGCAGTGTGAGAGAAATGGCCAGTCAGTCGATGGATATTGTAGCGAAGGCTCTGGAGCAGCAGGTGCTTCAGTCAGCACGGATGGTGGAGGAGCAGCTGGATGCTGAGCTGGAGAAGCTGGAGCGCATGGATGAAGACGAGCTGGAGCTGCTGAAGGAGAGAAGACTCGAGGCCCTTAAGAAAGCTCAGAAACAGAAGCAGGAGTGGATCTCTAAAGGGCATGGTGAATACAGAGAGATCCCAAGTGAGAAAGACTTCTTTCCAGAGGTGAAAGAAAGCAAAAGTGTGGTCTGTCATTTCTACAGAGACTCCACCTTCAGATGCAAGATTTTGGACAAGCACCTAGCTATTTTGGCTAAGAAGCATCTGGAAACGAAGTTCATCAAGCTGAATGTGGAGAAGGCTCCTTTCCTTACAGAGAGGCTGAGGATTAAAGTCATTCCAACATTGGCACTGGTGAAGGACGGCAAGACCAAAGATTATATTGTGGGTTTCAGCGATCTGGGCAACACCGATGAGTTTCCTACCGAAATGCTGGAGTGGAGACTGGGCTGTTCTGACATCATAAACTACAGTGGGAATCTTCTGGAGCCGCCAACAGTTGGACAGAAGACAGGGTCAAAGTTCACCAAAGTGGAGAAAAAGACCATCAGAGGGAAAGCCTATGACTCGGACTCTGAATCTGATGAAGATTAGAGGACTAAAACATCAAGCTCCGTCTTTCTCAGGGCTTCCTACATAACAGTCCTAAGTCTTGTGACACTGTGTTTTTAATTTGTGTAACACCACAGTGTCTGTTTAATTTCCTGTCTTTGACCTTTACTCTTTATTTGATCATTTCATGATGACCAAGCATTCACTGATAGTATATCACTACTTTTTGTTATCCCTTTAAGTTTACTGTCCGGAAGTGTGCTCTTTCTGTTGAGCATAACTAGTGAAGAGTCAGTctctgatttatttaataatgaaggTGAAGTTTCTAAAGGATGGAACTGTAAGCTGACATTTCAATGATGGTGCAAACACAAACATCCATATTTTTGCCTCTGACAAACTGATGCTCAGTTCAGTGAACAGCAAACAAGTGCCAAGGAAGCAAATTTCTGCATTTCAGTAAGAATCAACACCCCTTTCTCCCATTGATGTGAAGGAAGAGGAGGATTTTTCTTTTGCTAGCAGTACAggacttaataaaaaaaatatttaatatgtgtGTTCTGTTCCTCTGTGTAAAGATT
>TCONS_00073013
TGACGTAATCAGTCGACGCCTTTGCGTGAAGCCCTGCGTCAGTGTGCCGCCTTTCAGAAATTATACAGCGTTGGCAGTGTGAGAGAAATGGCCAGTCAGTCGATGGATATTGTAGCGAAGGCTCTGGAGCAGCAGGTGCTTCAGTCAGCACGGATGGTGGAGGAGCAGCTGGATGCTGAGCTGGAGAAGCTGGAGCGCATGGATGAAGACGAGCTGGAGCTGCTGAAGGAGAGAAGACTCGAGGCCCTTAAGAAAGCTCAGAAACAGAAGCAGGAGTGGATCTCTAAAGGGCATGGTGAATACAGAGAGATCCCAAGTGAGAAAGACTTCTTTCCAGAGGTGAAAGAAAGCAAAAGTGTGGTCTGTCATTTCTACAGAGACTCCACCTTCAGATGCAAGATTTTGGACAAGCACCTAGCTATTTTGGCTAAGAAGCATCTGGAAACGAAGTTCATCAAGCTGAATGTGGAGAAGGCTCCTTTCCTTACAGAGAGGCTGAGGATTAAAGTCATTCCAACATTGGCACTGGTGAAGGACGGCAAGACCAAAGATTATATTGTGGGTTTCAGCGATCTGGGCAACACCGATGAGTTTCCTACCGAAATGCTGGAGTGGAGACTGGGCTGTTCTGACATCATAAACTACAGTGGGAATCTTCTGGAGCCGCCAACAGTTGGACAGAAGACAGGGTCAAAGTTCACCAAAGTGGAGAAAAAGACCATCAGAGGGAAAGCCTATGACTCGGACTCTGAATCTGATGAAGATTAGAGGACTAAAACATCAAGCTCCGTCTTTCTCAGGGCTTCCTACATAACAGTCCTAAGTCTTGTGACACTGTGTTTTTAATTTGTGTAACACCACAGTGTCTGTTTAATTTCCTGTCTTTGACCTTTACTCTTTATTTGATCATTTCATGATGACCAAGCATTCACTGATAGTATATCACTACTTTTTGTTATCCCTTTAAGTTTACTGTCCGGAAGTGTGCTCTTTCTGTTGAGCATAACTAGTGAAGAGTCAGTctctgatttatttaataatgaaggTGAAGTTTCTAAAGGATGGAACTGTAAGCTGACATTTCAATGATGGTGCAAACACAAACATCCATATTTTTGCCTCTGACAAACTGATGCTCAGTTCAGTGAACAGCAAACAAGTGCCAAGGAAGCAAATTTCTGCATTTCAGTAAGAATCAACACCCCTTTCTCCCATTGATGTGAAGGAAGAGGAGGATTTTTCTTTTGCTAGCAGTACAggacttaataaaaaaaatatttaatatgtgtGTTCTGTTCCTCTGTGTAAAGATT
>TCONS_00073014
GTTAATGTCATGTTGTCGTGAGGCCTGTCAGCAGGCAGTGTGAGAGAAATGGCCAGTCAGTCGATGGATATTGTAGCGAAGGCTCTGGAGCAGCAGGTGCTTCAGTCAGCACGGATGGTGGAGGAGCAGCTGGATGCTGAGCTGGAGAAGCTGGAGCGCATGGATGAAGACGAGCTGGAGCTGCTGAAGGAGAGAAGACTCGAGGCCCTTAAGAAAGCTCAGAAACAGAAGCAGGAGTGGATCTCTAAAGGGCATGGTGAATACAGAGAGATCCCAAGTGAGAAAGACTTCTTTCCAGAGGTGAAAGAAAGCAAAAGTGTGGTCTGTCATTTCTACAGAGACTCCACCTTCAGATGCAAGATTTTGGACAAGCACCTAGCTATTTTGGCTAAGAAGCATCTGGAAACGAAGTTCATCAAGCTGAATGTGGAGAAGGCTCCTTTCCTTACAGAGAGGCTGAGGATTAAAGTCATTCCAACATTGGCACTGGTGAAGGACGGCAAGACCAAAGATTATATTGTGGGTTTCAGCGATCTGGGCAACACCGATGAGTTTCCTACCGAAATGCTGGAGTGGAGACTGGGCTGTTCTGACATCATAAACTACAGTGGGAATCTTCTGGAGCCGCCAACAGTTGGACAGAAGACAGGGTCAAAGTTCACCAAAGTGGAGAAAAAGACCATCAGAGGGAAAGCCTATGACTCGGACTCTGAATCTGATGAAGATTAGAGGACTAAAACATCAAGCTCCGTCTTTCTCAGGGCTTCCTACATAACAGTCCTAAGTCTTGTGACACTGTGTTTTTAATTTGTGTAAC
>TCONS_00073015
ttttagttttattcatgTCTATATTCTAAAGGCTTTTACAGAGgcttgtacatgtgtaattaaCCCGATGATATacaattcattgattcattttattttgtgaattatTGTATGGTTGATTAAAAAAGAATCCCAAAATCTTCTCTGTAAAATCTACGAACTAgtctatatttaattaaatttctaaTTGGCAtatttaaacatgacattttagaAGAATTCTTAATGCATTTGATCAACTGGCAAAATAATGGTTAATTTTTGCCCTATTCATCTGCAGGCTCTTGCCTTGAGAGTGTAAAACTGGTACTGGTTTAGTGTAGAAAagcatttatgttttaatatctTCTTTTTCACTGTATACTATTTTGAAGTGAAGTGTCATGTCTTGTCAAACACTGCCATATCTGTAGCAGGCAGTGTGAGAGAAATGGCCAGTCAGTCGATGGATATTGTAGCGAAGGCTCTGGAGCAGCAGGTGCTTCAGTCAGCACGGATGGTGGAGGAGCAGCTGGATGCTGAGCTGGAGAAGCTGGAGCGCATGGATGAAGACGAGCTGGAGCTGCTGAAGGAGAGAAGACTCGAGGCCCTTAAGAAAGCTCAGAAACAGAAGCAGGAGTGGATCTCTAAAGGGCATGGTGAATACAGAGAGATCCCAAGTGAGAAAGACTTCTTTCCAGAGGTGAAAGAAAGCAAAAGTGTGGTCTGTCATTTCTACAGAGACTCCACCTTCAG

Function

symbol description
txndc9 Orthologous to human TXNDC9 (thioredoxin domain containing 9).

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8569 Orthologous to human TXNDC9 (thioredoxin domain containing 9).

Ensembl:

ensembl_id ENSDARG00000069853

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073012 False 1370 mRNA 0.43 5 21819082 21824647
TCONS_00073013 False 1313 mRNA 0.44 5 21819136 21824647
TCONS_00073014 False 817 mRNA 0.47 5 21819742 21824190
TCONS_00073015 True 735 mRNA 0.39 2 21820101 21821156

Neighbor

gene id symbol gene type direction distance location
XLOC_037090 rev1 coding upstream 2476 21793565 ~ 21816606 (+)
XLOC_037089 NA coding upstream 53347 21761696 ~ 21765735 (+)
XLOC_037087 arhgef7a coding upstream 63172 21535885 ~ 21755910 (+)
XLOC_037088 sox1a coding upstream 94421 21722733 ~ 21724661 (+)
XLOC_037086 BX649266.2 coding upstream 322383 21495873 ~ 21496699 (+)
XLOC_037092 zgc:162944 coding downstream 2077 21826724 ~ 21831588 (+)
XLOC_037093 kctd12.1 coding downstream 19268 21843915 ~ 21845783 (+)
XLOC_037094 si:dkey-57a22.11 coding downstream 152736 21977383 ~ 21983659 (+)
XLOC_037095 CR536604.1 coding downstream 159462 21984109 ~ 21985996 (+)
XLOC_037096 si:dkey-57a22.13 coding downstream 165411 21990058 ~ 21991216 (+)
XLOC_037078 pla1a non-coding upstream 592950 21214940 ~ 21226132 (+)
XLOC_037077 NA non-coding upstream 613610 21202272 ~ 21205472 (+)
XLOC_037067 CR456628.1 non-coding upstream 1382567 20433812 ~ 20436515 (+)
XLOC_037104 NA non-coding downstream 488086 22312733 ~ 22313617 (+)
XLOC_037108 BX548053.3 non-coding downstream 752298 22576945 ~ 22577059 (+)
XLOC_037110 NA non-coding downstream 817739 22642386 ~ 22642685 (+)
XLOC_037116 NA non-coding downstream 1164294 22988941 ~ 22998060 (+)

Expression


Co-expression Network