G1779807


Basic Information

Item Value
gene id G1779807
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 14107240 ~ 14108618 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2037872
tgcattcagaaagtattcagaccccttcccttttccacatttttttacaccttattctaaaatcaattaaataaaaacatttcatcatcaatctacacagaatgacaaagtgaatttttttttgcaaacaatgacaaacagaaataccttatttacataacttattagaccctttgctattatactcgaaattgagctcaggtgcatcctgtttccactgatcacccttgagatgtttctacaacttgattggagtccacctgtggtcaattcaattggacatgatttggaaaggcgcacagctgtgtgtaaggtcccacagttgacagtgcatgtcagagcaaaaaccaaaccatgaggtcaaagaaattgtccgtagagctctgaaacaggattgtgtcgaggcacagatctggagaaggttaCCAAACAATGtctgaacacagtggcctccattattcttaaatggtaaaagtttggaaccaccaactctccccagagctggccgcccggcaaaactgagcaattgggggaaaacggccttggtcaaggagcttaccaagaacccgatggtcactctgacagagctccagaaatacaggtgtgctaaacttgtagcgtcatacccaaaaagaatcgaggctgcaatcgctgccaaaggggttTCAAAGTACTGGGTCTGAAAACCTAAGTAAATGTgagttacatttttttatttgtaataaatttgtcattattgggtattgtgtgtagattgaggtaaaaaaaaaaaactgaatcgATAGAATAagtttaacgtaacaaaatgtggaaaaagtcaaggggtctgaaaactttcagaATTCACGGTATATACAGAAATAGCAGTCTGACTATAGTAAACAATGTACACAAACACTAAAGGTGAAGCGGCTCTATTGGGAAACTGTCTTCAGGTCAGCTTTTAGTTTGTCTCTGTTCCCAAGGTGAAAGTTCCCGTAGAGTCACAGTACCGTGTCCATAAGAAAGCACTTACAGGGAGTGGATCAGATCTTAGATCGCTGTCTGCTTTGTTATAATGGTTTAGGGGTTAGAAAAGAAACACTGTAGCAGCACACGAACCAAGTATAGCAACTGATCTCAGGTCAGTTTTAAAATATGTCCACAATAGGCTACTGTATCAGTGGTGCGAGTGTTCATAGATTGGAATCATCTCATACTTCCTCAAACAAGTTATCAGCTGTGCTCCAGAGTGTGCAGTCAAAGAGAAGAGGTGGTTAACTGGTCTCAGATCAGCTTTGACAAGTGTCTCCCAGCTGAATGCTCCCGGTCACATGGGCAATGAAACAACGAAGCAGGTATATCCCCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2037872 True 1348 lncRNA 0.41 2 14107240 14108618

Neighbor

gene id symbol gene type direction distance location
LOC110502113 NA coding downstream 263911 13838464 ~ 13843329 (-)
LOC110501426 LOC106581739 coding downstream 1131395 12963389 ~ 12975845 (-)
LOC110501425 LOC106581740 coding downstream 1155143 12942551 ~ 12952097 (-)
LOC110502048 NA coding downstream 1171893 12928202 ~ 12935504 (-)
LOC110501424 i20ra coding downstream 1188067 12912761 ~ 12919173 (-)
nepro nepro coding upstream 12189 14120807 ~ 14127458 (-)
tex30 LOC106581745 coding upstream 18973 14127591 ~ 14131604 (-)
poglut2 kdelc1 coding upstream 23541 14132159 ~ 14156711 (-)
stxbp5l stxbp5l coding upstream 48576 14157194 ~ 14392227 (-)
gtf2e1 gtf2e1 coding upstream 334910 14443528 ~ 14489125 (-)
G1779799 NA non-coding downstream 24338 14082635 ~ 14082902 (-)
G1779798 NA non-coding downstream 27290 14079504 ~ 14079950 (-)
G1779688 NA non-coding downstream 168660 13938147 ~ 13938580 (-)
G1779000 NA non-coding downstream 221888 13885113 ~ 13885352 (-)
G1778649 NA non-coding downstream 475742 13631280 ~ 13631498 (-)
G1779818 NA non-coding upstream 9821 14118439 ~ 14118710 (-)
G1779863 NA non-coding upstream 90160 14198778 ~ 14303481 (-)
G1779894 NA non-coding upstream 142086 14250704 ~ 14251221 (-)
G1779995 NA non-coding upstream 310588 14419206 ~ 14419417 (-)
G1779996 NA non-coding upstream 312879 14421497 ~ 14421878 (-)
G1778224 NA other downstream 776745 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 934261 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 1482546 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 1837126 12268217 ~ 12270114 (-)
G1777286 NA other downstream 2065618 12041108 ~ 12041622 (-)
G1781137 lrp2 other upstream 1458885 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 1577238 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 2948504 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 3760911 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 5066949 19175567 ~ 19179266 (-)

Expression


Co-expression Network