XLOC_037096 (si:dkey-57a22.13)


Basic Information

Item Value
gene id XLOC_037096
gene name si:dkey-57a22.13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21990058 ~ 21991216 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073021
GACATTTATAAAGCAGACCTCCTGCCCTAATTTGTTTGACTGTTTCTCTTGTTTACCACTTCTGAGACTCACATCAAAATGAGTAAGTGACATCGCTCACTCACAGATTATCTTTTATGAGGAGAAAAACTTCCAGGGTTGCTCCTTTAAATGTGACTGCCCAGACATGAAACCTCATTTCATCCGATGCAACTCTGCCAGGGTGGAGATCGGCTGCTGGGTCTTGTATGAAAGGCCCAACTACTCTGGACACCAGTATGTGCTAACCAAAGAAGAATATCCTGAGTATCACTCTTGGATGGGCTACAATGACACTATTTGCTCATGCCGTAATTTGTTCTAATAGTGAAGGACCTCACTGAATCCATATATACGATCGGCCAGATTTCCAAGGTCAGATGATGGAATTCAATGATGACTGCGAATCCATTCATCAAAGTTTCCATTGTCACAGCATTCACTCTTGCAATGTCATGGAGGGCCACTGGACCTTCTATGAACACTCTGGCTTTCTAGGTTGTCAGTATTTCATGGCTCCTGGTGAATATCACAAGTTTGTAAACTGGGGTGCCACATGTGCCACAATTGGCTCCTTCCGCAGAATCACTGATTTTGAAAGCTCCAATAACTGTGCCTTTTCAGCATTGATTTGTCATTAAATTGTCACAAAA
>TCONS_00073022
GACTGTTTCTCTTGTTTACCACTTCTGAGACTCACATCAAAATGAGTAAGATTATCTTTTATGAGGAGAAAAACTTCCAGGGTTGCTCCTTTAAATGTGACTGCCCAGACATGAAACCTCATTTCATCCGATGCAACTCTGCCAGGGTGGAGATCGGCTGCTGGGTCTTGTATGAAAGGCCCAACTACTCTGGACACCAGTATGTGCTAACCAAAGAAGAATATCCTGAGTATCACTCTTGGATGGGCTACAATGACACTATTTGCTCATGCCGTAATTTGTTCTGTGAGTGATATGCCTGTAAAGCTTTCATAATATATTTAGTCAGTTCTTGTATATGATTCGTTGCCTTTAATATTTTGTTCCATCTTTGATGTTTATTGTTCTGCCACAAATAATTTTGTACGCATGTTTAAACATTCAAACTGTATGTTTGGGTGTTCAAACCTGGTTTTGAAGGGCCGCTGTGAGTTTAGCTCCAGCCTTATTAAACACACTAAGTTAATTAGAGTCTCCAAGTTCATTAGAAATTACCAGGCAGAGATGTGTTTGAGACAAAGTCTGTGAAACATCAGGCCTCCAGCACCAGGACTGTACACCCTATACTTTACAAACTTTGAATTTAAAGCTCAACTGTTTTTCAGAATAGTGAAGGACCTCACTGAATCCATATATACGATCGGCCAGATTTCCAAGGTCAGATGATGGAATTCAATGATGACTGCGAATCCATTCATCAAAGTTTCCATTGTCACAGCATTCACTCTTGCAATGTCATGGAGGGCCACTGGACCTTCTATGAACACTCTGGCTTTCTAGGTTGTCAGTATTTCATGGCTCCTGGTGAATATCACAAGTTTGTAAACTGGGGTGCCACATGTG
>TCONS_00073023
GACTGTTTCTCTTGTTTACCACTTCTGAGACTCACATCAAAATGAGTAAGATTATCTTTTATGAGGAGAAAAACTTCCAGGGTTGCTCCTTTAAATGTGACTGCCCAGACATGAAACCTCATTTCATCCGATGCAACTCTGCCAGGGTGGAGATCGGCTGCTGGGTCTTGTATGAAAGGCCCAACTACTCTGGACACCAGTATGTGCTAACCAAAGAAGAATATCCTGAGTATCACTCTTGGATGGGCTACAATGACACTATTTGCTCATGCCGTAATTTGTTCTAATAGTGAAGGACCTCACTGAATCCATATATACGATCGGCCAGATTTCCAAGGTCAGATGATGGAATTCAATGATGACTGCGAATCCATTCATCAAAGTTTCCATTGTCACAGCATTCACTCTTGCAATGTCATGGAGGGCCACTGGACCTTCTATGAACACTCTGGCTTTCTAGGTTGTCAGTATTTCATGGCTCCTGGTGAATATCACAAGTTTGTAAACTGGGGTGCCACATGTGCCACAATTGGCTCCTTCCGCAGAATCACTGATTTTGAAAGCTCCAATAACTGTGCCTTTTCAGCATTGATTTGTCATTAAATTGTCACAAAACTAA
>TCONS_00073024
ATGAGTAAGATTATCTTTTATGAGGAGAAAAACTTCCAGGGTTGCTCCTTTAAATGTGACTGCCCAGACATGAAACCTCATTTCATCCGATGCAACTCTGCCAGGGTGGAGATCGGCTGCTGGGTCTTGTATGAAAGGCCCAACTACTCTGGACACCAGTATGTGCTAACCAAAGAAGAATATCCTGAGTATCACTCTTGGATGGGCTACAATGACACTATTTGCTCATGCCGTAATTTGTTCTATTTCCAAGGTCAGATGATGGAATTCAATGATGACTGCGAATCCATTCATCAAAGTTTCCATTGTCACAGCATTCACTCTTGCAATGTCATGGAGGGCCACTGGACCTTCTATGAACACTCTGGCTTTCTAGGTTGTCAGTATTTCATGGCTCCTGGTGAATATCACAAGTTTGTAAACTGGGGTGCCACATGTGCCACAATTGGCTCCTTCCGCAGAATCACTGATTTTGAAAGCTCCAATAACTGTGCCTTTTCAGCATTGATTTGTCATTAA

Function

symbol description
si:dkey-57a22.13 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception.

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-425 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception.

Ensembl:

ensembl_id ENSDARG00000092345

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073021 False 671 processed_transcript 0.43 3 21990058 21991212
TCONS_00073022 False 882 mRNA 0.40 2 21990095 21991120
TCONS_00073023 False 619 mRNA 0.42 3 21990095 21991216
TCONS_00073024 True 519 mRNA 0.43 3 21990136 21991200

Neighbor

gene id symbol gene type direction distance location
XLOC_037095 CR536604.1 coding upstream 4062 21984109 ~ 21985996 (+)
XLOC_037094 si:dkey-57a22.11 coding upstream 6399 21977383 ~ 21983659 (+)
XLOC_037093 kctd12.1 coding upstream 144275 21843915 ~ 21845783 (+)
XLOC_037092 zgc:162944 coding upstream 158470 21826724 ~ 21831588 (+)
XLOC_037091 txndc9 coding upstream 165411 21819082 ~ 21824647 (+)
XLOC_037097 crygm7 coding downstream 1876 21993092 ~ 21994057 (+)
XLOC_037098 si:dkey-57a22.14 coding downstream 5099 21996315 ~ 21997149 (+)
XLOC_037099 crygm6 coding downstream 9596 22000812 ~ 22001778 (+)
XLOC_037100 si:dkey-57a22.15 coding downstream 12726 22003942 ~ 22004833 (+)
XLOC_037101 crygm1 coding downstream 20696 22011912 ~ 22012819 (+)
XLOC_037089 NA non-coding upstream 224323 21761696 ~ 21765735 (+)
XLOC_037086 BX649266.2 non-coding upstream 493359 21495873 ~ 21496699 (+)
XLOC_037078 pla1a non-coding upstream 763926 21214940 ~ 21226132 (+)
XLOC_037077 NA non-coding upstream 784586 21202272 ~ 21205472 (+)
XLOC_037104 NA non-coding downstream 321517 22312733 ~ 22313617 (+)
XLOC_037108 BX548053.3 non-coding downstream 585729 22576945 ~ 22577059 (+)
XLOC_037110 NA non-coding downstream 651170 22642386 ~ 22642685 (+)
XLOC_037116 NA non-coding downstream 997725 22988941 ~ 22998060 (+)
XLOC_037119 CR394542.1 non-coding downstream 1055051 23046267 ~ 23046385 (+)

Expression


Co-expression Network