G1779638 (LOC106581763)


Basic Information

Item Value
gene id G1779638
gene name LOC106581763
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 14903730 ~ 14906856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2037701
cccccctttttttttaggTAGGGCTACTAAATTTTTCAATCACATAAAACATACATTTAGATTTAAATGCGAACAATGATAGTTTAGTTGCACCTCTTATCACAGTGAACCTATTATGTGTGAACAACCAATTTGGAGTGTCCAAACTCCATTCCCTGGACCTGGCCATAACCACAAGTGAACAACGATGCCGGTTATTCATCAACAAGATCACAATGTTTCTCAAATCTGCATTTTGGTGCGTATTTTGTGTCATCTTCAAGACCCACACATCCTTCAAATACAATTAGCTAAAcaataattagcattttattgcttGTTGGCTCCAGTTGTCCCAGCTGCATTGCTGTTAACTGAAGCATATCCCAGTACAGGGGGATAAACAAAGGTATGGTGTGAATCATAGTTCTAACTCAAAACTCTTAACTGATTTATATCTAATAGCGTGTATTGAATTACCTTTTTTATAATCAAAGCAAGTGCAAAGAAATGAGTCCCAATGACAATATTATTTGCCTAATACCTGTAGCTACTTTTTAGTCTGTGTAGCACTAGAAAATCATCAGTAACATTTGCCCTTACTGAAAAGTAACGtttagatttattttttttaagtatttggccaatgcatttttttttttttcaaataatgactaaaataaatatacagtgtGCTAAAGTATTTAAatatatacaaacatacaaaATGTTCCAGTCTATACAGTTCATTAGATTGGACAAAAGTGACTGCAAAAAAAAGATTATCTTCAGGTAAACATTGGATTGAAACTGTttatgctaaaaaaaaaaaaatgtatcaatggCAGATAATTCGTTTAAAAAGTCCCAATTCAGAGAAAATGAATTGTAAGATATGATGCTTCTCATTTCCTCAGGATAGGACACAGGATAGGACACATTTTTGGAGTTTGCTTCACAAATGCAGTCAATTGAGTTTAGactttacaaaaataaataactaaGATCAATGGGTTCGTGACACTGGGATGTTTAGAAAAAAATGGGAGATTCTTGTCTCTGACAGCATCCCAACAGTCAAGTGTCTTATGAGTAGTTCTCATTCTCATTCCAGCTTGTCACCCACTGCTTTTTCTCAAAGGAATGCAGCTTGGCTTTCCTGTCTTTGAACTGACGAGCCTCTTTCCTTATCCGTACAGCATGGTATATTGGAACGCTGTCCTCGTGTTCAGAACGTTTGAAAAATCCACACCCAGGTCTGAGCGCAGAGAACGGGCACTATGCCTCAGTAGTGAGTTTCTCTTTATCAGAGGCCTGAACATGGATCTGAGCCTTGTGATACGCTGCATCGTACTGGTCTTGTGGGGCTCTCTTGAAGAAACCACACTTCCAGAGTAGAAACACTAGCAATGCCAACATCAGAATACCAGCCAGGACAGCCACGAGGATGATCCACCAGGGAACTCCACCATACTGGGTTACTGCCTTCTCTGGAAACACCGTGACTCTCACCTGAGTCTCAGCATTCCTGAGAACCATATTCTTTGCAGGAGCATCAAGGCTGATGGATGCTTTCACAATTATATCAAGATAGTTCAAATTGGCATAATTCTCAAGGAAGGTAGCGTTCCACAGACGGCATCGCAGCGCAATCACTGCACTACTGTCCAAGCCCTGTAGAGGGCACTTGATCACCACACATCTAGCGTCATAGCCATTGCCACACATCTGAGAGGAACATAACCTTTTGTCAGACAGACAACGTGTCATTATTGATCTATTTTTAAATGCAAGTGAAAGTGTGTTTACCAAAATCTTGTGCTTTTTTTGGTCCAATAAAGTAATTTTGCTTCCAGATTTTTTGCCTCCAACTTCACGCTTTTTCCTAGATGTGCTGGActcctaaaaaataaataaactcatCACAAGTTAGTGATTCAAACTTGAATGTCTTAATAACGCTTAATCTCTGGCCCATTTTGCTTTTCCACAAATGTATCAGGTACAGTGAAACTTCAGTAGGAAAGTCTTACCTGAATGTGTTTGAGAGAGTTGATCTCAGTCTCTGGGGAGCAGGGGATCTCTTCCAGGCCAGTACTGCTGATCTTAACCAGATATAACAGCCATTTCCCATCCACATTCTCTTTGGGCCACTGGATGTTCAACGAGGCTGTGCCAAAGGACTTCAACGGCTTACCCAAATTGAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2037701 True 2186 lncRNA 0.39 5 14903730 14906856

Neighbor

gene id symbol gene type direction distance location
ppp1r9ala LOC106581761 coding upstream 18542 14851810 ~ 14885188 (+)
LOC110502114 NA coding upstream 186115 14711709 ~ 14717615 (+)
LOC110501446 LOC106581756 coding upstream 215619 14681021 ~ 14688111 (+)
LOC110501445 NA coding upstream 239729 14588535 ~ 14664001 (+)
cir1 cir1 coding upstream 320886 14570825 ~ 14582844 (+)
LOC110501453 LOC106581766 coding downstream 60814 14967670 ~ 14970001 (+)
LOC110501456 LOC106581769 coding downstream 138478 15045334 ~ 15065802 (+)
mettl8 mettl8 coding downstream 197522 15104378 ~ 15117153 (+)
LOC110501461 tlk1 coding downstream 215786 15122642 ~ 15148331 (+)
mettl5 mettl5 coding downstream 447676 15354532 ~ 15358880 (+)
G1779637 NA non-coding upstream 154 14903305 ~ 14903576 (+)
G1779633 NA non-coding upstream 3295 14900176 ~ 14900435 (+)
G1779625 NA non-coding upstream 12649 14890846 ~ 14891081 (+)
G1779624 NA non-coding upstream 14383 14889055 ~ 14889347 (+)
G1779602 NA non-coding upstream 61830 14841697 ~ 14841900 (+)
G1779668 NA non-coding downstream 34600 14941456 ~ 14941688 (+)
G1779680 NA non-coding downstream 47935 14954791 ~ 14955012 (+)
G1779684 NA non-coding downstream 57990 14964846 ~ 14965158 (+)
G1779687 NA non-coding downstream 64306 14971162 ~ 14971388 (+)
G1780294 NA non-coding downstream 73844 14980700 ~ 14980917 (+)
G1779636 NA other upstream 470 14902795 ~ 14903260 (+)
G1779170 NA other upstream 823991 14079497 ~ 14079739 (+)
LOC110501417 LOC106581898 other upstream 2116152 12756352 ~ 12787590 (+)
G1776709 NA other upstream 2145534 12690062 ~ 12761001 (+)
LOC110501399 LOC106581914 other upstream 2653722 12202156 ~ 12270054 (+)
G1780353 NA other downstream 131243 15038099 ~ 15043643 (+)
G1780491 NA other downstream 384506 15291362 ~ 15347666 (+)
G1780575 NA other downstream 517855 15424711 ~ 15433820 (+)
G1781293 LOC106586198 other downstream 932748 15839604 ~ 15848595 (+)
G1781423 LOC106581799 other downstream 1155901 16062757 ~ 16063401 (+)

Expression


Co-expression Network