G1780855


Basic Information

Item Value
gene id G1780855
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15161960 ~ 15163276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2039064
tttgcagggctctgtcagtgctcctcctgctcctccttgcacaaaggcggaggtagcgttcctgctgctgggttgttgccctcctacggcctcctccacgtctcctgatgtactggcctgtctcctggtagcgcctccatgctctggacactacgctgacagacacagcaaaccttcttgccatagctcacattgatgtgccatcctggatgagctgcactaccggAGCCACtaccgtctcatgctaccactagagtgaaagcactgccagcattcaaaagtgaccacaacatcagccaggaagcataggaactgagaagtggtctgtggtcaccacctgcagaaccactcctttattgggggtgtcttgctaatttctataatttccacctgttgtctattccatttgcacaacagcatgtgaaatttattatcaatcagtgttgcttcctaagtggacagtttgatttcacagaagtgtgattgacttggagttacattgtgttgtttaagtgttcccttttattttttttgagcagtgtaaatAAATACAGCCCTTAATATAACCAATAGATGGATTAAGATATTTGTATAGTAATATGTAACTCAGTCACCACCCTTAACCTTAGTGCAATCTATGTTGTGTAAATGTAATATGTCTTTGTGAATCACACTGACTGAATGTTATAACGTCACACGACTAGCTGTGGGAGGGAAGCTGAGCTCCGTCAGCAGATTTGCTGGTGCTTTATTTAGTGAGAAGCAGAATGCTAAACTATCTGGGGAAATATTTTACCCTAGGGATTGTTGCACATTGTAGAGCGTTTACTCTGTTTTGAAGTATTTCACTTCATGAAGGGGGCCATTTTGATGAAATGTATCTTACCTTTCAAATCCATAAACTATATGTCATGGATGTTCTGGGGGTCTTTACATGATCCACATGGGCACAGTTTTATCCTGTGAGCATCGCCGTGTTGTAAAAGACCAATTGTTTGTCATTGAGATGttgatttaaacaaaacaaatgcacagttatgatgatgatgatgatgatgattctgTTGTTTCCGTGATGAAATACGTTGAATACATTCCTCAGTGGGATGGATGTCCCCCGTCGAGGTAGGCACTTTAACCTCTCATACCATGTGCAGCGCATTGCAGTCCTATTTACAGCAGAAACAAAAATCTcagctttttaaaaaaaacactaaaaAAAACAGTGGGGGCATGTTTTTGGCTGTTCTTTGTTAATGAGGTCCAATGATCATCTGTTACGCATCCGCACTGTTGAAATAAATCTGTGGCTGTGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2039064 True 1317 lncRNA 0.43 1 15161960 15163276

Neighbor

gene id symbol gene type direction distance location
LOC110501462 gors2 coding downstream 9046 15148842 ~ 15152914 (-)
LOC110501459 LOC106581770 coding downstream 62270 15096036 ~ 15099690 (-)
LOC110501457 dc1i2 coding downstream 73573 15065745 ~ 15088387 (-)
LOC110501455 LOC106581768 coding downstream 118077 15016155 ~ 15043883 (-)
LOC110501454 LOC106581767 coding downstream 181215 14975338 ~ 14980745 (-)
LOC110501463 LOC106581773 coding upstream 2627 15165903 ~ 15187152 (-)
LOC110501465 LOC106581774 coding upstream 37096 15200372 ~ 15202635 (-)
LOC118936393 NA coding upstream 48200 15211476 ~ 15214654 (-)
LOC110502051 myo3b coding upstream 68551 15231827 ~ 15310852 (-)
LOC110501466 ubr3 coding upstream 150883 15314159 ~ 15354447 (-)
G1780892 NA non-coding downstream 5809 15155873 ~ 15156151 (-)
G1780264 NA non-coding downstream 221904 14939854 ~ 14940056 (-)
G1780243 NA non-coding downstream 260420 14901334 ~ 14901540 (-)
G1780242 NA non-coding downstream 263825 14897907 ~ 14898135 (-)
G1780907 NA non-coding upstream 30750 15194026 ~ 15194281 (-)
G1780926 NA non-coding upstream 53358 15216634 ~ 15216871 (-)
G1780931 NA non-coding upstream 56409 15219685 ~ 15220181 (-)
G1778224 NA other downstream 1831465 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 1988981 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 2537266 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 2891846 12268217 ~ 12270114 (-)
G1777286 NA other downstream 3120338 12041108 ~ 12041622 (-)
G1781137 lrp2 other upstream 404227 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 522580 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 1893846 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 2706253 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 4012291 19175567 ~ 19179266 (-)

Expression


Co-expression Network