XLOC_037100 (si:dkey-57a22.15)


Basic Information

Item Value
gene id XLOC_037100
gene name si:dkey-57a22.15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22003942 ~ 22004833 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073031
TCTCCAACGGAGACCATGGGCAAGATTGTTTTTTACGAGGACAAAAATTTCCAAGGTCGTAGTTATGAGTGCAGCAATGACTGCACAGACCTACACATTTACTTCAGTCGCTGCAACTCCATCAGAGTAGAGAGTGGCTGTTTCATGATCTATGAACGTCCAAATTATATGGGCCACCAGTATTTTATGAAGCGAGGAGATTATTCTGACTACCAGAGATGGATGGGTTTCAGTAGCTCTATTCGATCCTGCCGAACAATTCCAATGTACAGGGGTCCATATAGACTGAGGATCTATGAAAAGGCTGACTATGGAGGCCATATGATGGAGTTCATGGACGACTGCCCCTGTGTGTCTGATCGTTTCCACCATCGACATGTGTACTCCTGTAACGTGATGAACGGCTACTGGATCTTTTATGAATATCCCAACTACAAAGGGAGGCAGTACTTCCTGAAATCTGGGGAATACAGGAGATACAGGGACTGGTGTGCCACGTGTGCAACTGTGGGCTCTTTCAGACGAGTCACAGATTTCTAGCCATTCTTCTTGCACTTATTTTTATGAACTGTTTATTTCCTGTTTATAAGCATAACTGTTTATAAACAGCTTGATTTTTCACTTATTGTGcctggatatatatataaaaaaacagacgaataaaatgatatttgtaataa

Function

symbol description
si:dkey-57a22.15 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Human ortholog(s) of this gene implicated in cataract; cataract 2 multiple types; and cataract 39 multiple types. Orthologous to human CRYGB (crystallin gamma B) and CRYGC (crystallin gamma C).

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-427 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Human ortholog(s) of this gene implicated in cataract; cataract 2 multiple types; and cataract 39 multiple types. Orthologous to human CRYGB (crystallin gamma B) and CRYGC (crystallin gamma C).

Ensembl:

ensembl_id ENSDARG00000093318

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073031 True 680 mRNA 0.41 3 22003942 22004833

Neighbor

gene id symbol gene type direction distance location
XLOC_037099 crygm6 coding upstream 2164 22000812 ~ 22001778 (+)
XLOC_037098 si:dkey-57a22.14 coding upstream 6793 21996315 ~ 21997149 (+)
XLOC_037097 crygm7 coding upstream 9885 21993092 ~ 21994057 (+)
XLOC_037096 si:dkey-57a22.13 coding upstream 12726 21990058 ~ 21991216 (+)
XLOC_037095 CR536604.1 coding upstream 17946 21984109 ~ 21985996 (+)
XLOC_037101 crygm1 coding downstream 7079 22011912 ~ 22012819 (+)
XLOC_037102 zgc:153846 coding downstream 12535 22017368 ~ 22018304 (+)
XLOC_037103 crygm2e coding downstream 75289 22080122 ~ 22080989 (+)
XLOC_037104 NA coding downstream 307900 22312733 ~ 22313617 (+)
XLOC_037105 crygs3 coding downstream 346610 22351443 ~ 22366295 (+)
XLOC_037089 NA non-coding upstream 238207 21761696 ~ 21765735 (+)
XLOC_037086 BX649266.2 non-coding upstream 507243 21495873 ~ 21496699 (+)
XLOC_037078 pla1a non-coding upstream 777810 21214940 ~ 21226132 (+)
XLOC_037077 NA non-coding upstream 798470 21202272 ~ 21205472 (+)
XLOC_037108 BX548053.3 non-coding downstream 572112 22576945 ~ 22577059 (+)
XLOC_037110 NA non-coding downstream 637553 22642386 ~ 22642685 (+)
XLOC_037116 NA non-coding downstream 984108 22988941 ~ 22998060 (+)
XLOC_037119 CR394542.1 non-coding downstream 1041434 23046267 ~ 23046385 (+)

Expression


Co-expression Network