XLOC_037102 (zgc:153846)


Basic Information

Item Value
gene id XLOC_037102
gene name zgc:153846
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22017368 ~ 22018304 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073033
ACAGCTGGTACAGTGAACTGAAGCACTGAGAAAAAAGCAAGCTACCACCATGGGCAAGGTCATCTTCTACGAGGACAGAAACTTCCAGGGCCGCAACTATGAGTGCATGAGCGACTGTTCTGATATTTCCTCATACCTGGGCCGCGTCGGGTCCATCAGAGTCGAAAGTGGTTGTTTCATTGTCTATGAGCGCAATGGCTTCATGGGCAACCAGTTCTTCCTGAGAAGGGGCGAGTACCATGACATTCAGCGTATGATGAGCATGGGCATGATGTTCGACACTATCAGATCCTGCCGCATGATTCCTTCATACAGGGGATCCTACAGAATGAGGATTTATGAAAGGGATAACTTCGGAGGTCAGATGTACGAGCTGATGGATGACTGTGAGAGCATCCAGGACCGTTACCGCATGTCCGACTGCCAGTCCTGTCATGTGATGGACGGTCACTGGCTCATGTTTGAGCAGCCCCACTATAGAGGCAGGATGATTTACTTCAGGCCTGGAGAGTACAGGAGCTTCAGAGATATGGGATTCAGCAACATGAGATTCATGAGCATGAGGCGTATCACTGACATGTGTTAAATTATTAGAATATAGAAgcaaataaagtattattttcagAAA

Function

symbol description
zgc:153846 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract; cataract 2 multiple types; cataract 39 multiple types; cataract 4 multiple types; and cataract 7. Orthologous to several human genes including CRYGA (crystallin gamma A); CRYGB (crystallin gamma B); and CRYGC (crystallin gamma C).

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005575 cellular_component cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-898 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract; cataract 2 multiple types; cataract 39 multiple types; cataract 4 multiple types; and cataract 7. Orthologous to several human genes including CRYGA (crystallin gamma A); CRYGB (crystallin gamma B); and CRYGC (crystallin gamma C).

Ensembl:

ensembl_id ENSDARG00000040738

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073033 True 628 mRNA 0.47 3 22017368 22018304

Neighbor

gene id symbol gene type direction distance location
XLOC_037101 crygm1 coding upstream 4549 22011912 ~ 22012819 (+)
XLOC_037100 si:dkey-57a22.15 coding upstream 12535 22003942 ~ 22004833 (+)
XLOC_037099 crygm6 coding upstream 15590 22000812 ~ 22001778 (+)
XLOC_037098 si:dkey-57a22.14 coding upstream 20219 21996315 ~ 21997149 (+)
XLOC_037097 crygm7 coding upstream 23311 21993092 ~ 21994057 (+)
XLOC_037103 crygm2e coding downstream 61818 22080122 ~ 22080989 (+)
XLOC_037104 NA coding downstream 294429 22312733 ~ 22313617 (+)
XLOC_037105 crygs3 coding downstream 333139 22351443 ~ 22366295 (+)
XLOC_037106 crygs4 coding downstream 341615 22359919 ~ 22360742 (+)
XLOC_037107 dgkg coding downstream 357027 22375331 ~ 22618558 (+)
XLOC_037095 CR536604.1 non-coding upstream 31372 21984109 ~ 21985996 (+)
XLOC_037089 NA non-coding upstream 251633 21761696 ~ 21765735 (+)
XLOC_037086 BX649266.2 non-coding upstream 520669 21495873 ~ 21496699 (+)
XLOC_037078 pla1a non-coding upstream 791236 21214940 ~ 21226132 (+)
XLOC_037077 NA non-coding upstream 811896 21202272 ~ 21205472 (+)
XLOC_037108 BX548053.3 non-coding downstream 558641 22576945 ~ 22577059 (+)
XLOC_037110 NA non-coding downstream 624082 22642386 ~ 22642685 (+)
XLOC_037116 NA non-coding downstream 970637 22988941 ~ 22998060 (+)
XLOC_037119 CR394542.1 non-coding downstream 1027963 23046267 ~ 23046385 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_09368857_09369508 CRYGM1 coding CI01000009 null 9368831 ~ 9369508 (-)