G1780476


Basic Information

Item Value
gene id G1780476
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15269322 ~ 15270694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2038641
gtacgggagttgcagcgatgagacaagactaactaccatttggataccatgaaattggggagaaaaaggggtaaaaaatatataataatttaaaaaatacaaattttaaaaaagtgtggaagaacttgactggcctccacagagccctgacctcaactccataaaacacctttgagatgaattggaacgcagactgcgagccgggcctaatcgcccaacatcagtgcccgacctcactaatgccgTTGCGTCTGAATGGAATcaagttcccgcagcaatgttccaatatctggtggaaagccttcccagaagagtggaggctgttatagcagcaaaggggggggggggggggggggggggggaaggaccagcttcatattaatgcccaggattttggaattaaatgttcgacgagtgtccacatacttttggttatgtagtgtatatcCCTTTGTGTGTTTATGCTGAAGATAAGAAAGCCGTTGGACAAGCTGAACCAAATTAGAGAGGCTTTTAGGCCTAATTGACACCATGTCTGGAGCCATGAATGGTGAACCACATCTCTGCTGTTACTCAATACTTCGGAGTACCAAAGTGCAGTGAATTCTCCACCCATTCACATTATACTGAATTTACTTTTTCATGCTAGTGTATTTTTCGTCAATCAAGTAAAGAGGATGGCTGTGGGCTCACCTCATGCACTACGTTCCAATATAGCCTACAGACATGGCACATGGATTTCTAATGGAAGCTAAACCAAAAGTACCCATCGTAAATTGGAGCTGCTCTTAATTCGACTATAACTGAAAGCAGTCATTTACAGGTGGCTCAAAAGGAAGCGAAGCACATAATATGGCTTAACTGCAGGAAAGTATGAAGTGCTGTATCTGGTAATTGAACACATCCATTAGCATGCCGGCTCAGCCAAGTGACCACGGGGCCCCAGCCACGGCTAATGATGAGGATATtaccacctttatttaactgcaCAGAAAAGACCGGGAAGAAGAGTTGCTTATATGATCTCTAAATACCGTTTCTTCATCTCCTGGGTATTTGGAAACCTTATCACAAAAATATCCCGTTGCTGCACAATCTGTAGATAGCAGCAAGCAGCAGGAAACCAAACGGGGCAGCTTagtgaaaataaaaaacagagcCCTCCATGGAGAGCTGAGCCTCTCAGGAGATAATGGAGACTGGAGATTTATCCACACACAGTATCGCATCGCAGGGAGAGAGGCTTTGAGTGGAGGAGGACCAGGATGCCGCTGTGTCTGGAGAGgcgtctttaaaaaaaagaagaaaatctCCTTACCTGAAAGTTTATTGAGACATGAACGATACTagaaacaaaacacacaatcatACAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2038641 True 1373 lncRNA 0.44 1 15269322 15270694

Neighbor

gene id symbol gene type direction distance location
LOC110501461 tlk1 coding upstream 120991 15122642 ~ 15148331 (+)
mettl8 mettl8 coding upstream 152169 15104378 ~ 15117153 (+)
LOC110501456 LOC106581769 coding upstream 203520 15045334 ~ 15065802 (+)
LOC110501453 LOC106581766 coding upstream 299321 14967670 ~ 14970001 (+)
ppp1r9ala LOC106581761 coding upstream 384134 14851810 ~ 14885188 (+)
mettl5 mettl5 coding downstream 83838 15354532 ~ 15358880 (+)
fastkd1 fakd1 coding downstream 131098 15401792 ~ 15415120 (+)
lrp2a lrp2 coding downstream 232366 15503060 ~ 15572970 (+)
abcb11a LOC106581787 coding downstream 320026 15590720 ~ 15607266 (+)
spc25 spc25 coding downstream 339553 15610247 ~ 15614355 (+)
G1780465 NA non-coding upstream 16633 15252440 ~ 15252689 (+)
G1780464 NA non-coding upstream 17087 15251970 ~ 15252235 (+)
G1780459 NA non-coding upstream 25419 15243495 ~ 15243903 (+)
G1780457 NA non-coding upstream 29363 15239739 ~ 15239959 (+)
G1780452 NA non-coding upstream 35809 15233289 ~ 15233513 (+)
G1780477 NA non-coding downstream 286 15270980 ~ 15271189 (+)
G1780479 NA non-coding downstream 2602 15273296 ~ 15273726 (+)
G1780482 NA non-coding downstream 5701 15276395 ~ 15277303 (+)
G1780483 NA non-coding downstream 8071 15278765 ~ 15299462 (+)
G1780563 NA non-coding downstream 122539 15393233 ~ 15393449 (+)
G1780353 NA other upstream 225679 15038099 ~ 15043643 (+)
G1779636 NA other upstream 366062 14902795 ~ 14903260 (+)
G1779170 NA other upstream 1189583 14079497 ~ 14079739 (+)
LOC110501417 LOC106581898 other upstream 2481744 12756352 ~ 12787590 (+)
G1776709 NA other upstream 2511126 12690062 ~ 12761001 (+)
G1780491 NA other downstream 20668 15291362 ~ 15347666 (+)
G1780575 NA other downstream 154017 15424711 ~ 15433820 (+)
G1781293 LOC106586198 other downstream 568910 15839604 ~ 15848595 (+)
G1781423 LOC106581799 other downstream 792063 16062757 ~ 16063401 (+)
G1781813 NA other downstream 1001695 16272389 ~ 16273110 (+)

Expression


Co-expression Network